1 new commit in galaxy-central:

https://bitbucket.org/galaxy/galaxy-central/commits/1fb11ee1db88/ Changeset: 1fb11ee1db88 User: dan Date: 2014-07-28 22:25:07 Summary: IGB can read over https just fine (but won't follow 307 Temporary Redirects). Remove strip_https flag from IGB external display applications. Affected #: 7 files

diff -r 4ae3f282a0d258fea48adca6e01537d25e291c68 -r 1fb11ee1db887886672a4b74982b9971420f67a4 display_applications/igb/bam.xml --- a/display_applications/igb/bam.xml +++ b/display_applications/igb/bam.xml @@ -7,8 +7,8 @@ #set nm=$bam_file_for_name.name ${re.sub('\W',"_",nm)} </param> - <param type="data" name="bai_file" url="${niceName}.bam.bai" metadata="bam_index" strip_https="True" /> - <param type="data" name="bam_file" url="${niceName}.bam" strip_https="True" /> + <param type="data" name="bai_file" url="${niceName}.bam.bai" metadata="bam_index" /> + <param type="data" name="bam_file" url="${niceName}.bam" /></link></display>

diff -r 4ae3f282a0d258fea48adca6e01537d25e291c68 -r 1fb11ee1db887886672a4b74982b9971420f67a4 display_applications/igb/bb.xml --- a/display_applications/igb/bb.xml +++ b/display_applications/igb/bb.xml @@ -8,7 +8,7 @@ #set nm=$bigbed_file_for_name.name ${re.sub('\W',"_",nm)} </param> - <param type="data" name="bigbed_file" url="${niceName}.bigbed" strip_https="True" /> + <param type="data" name="bigbed_file" url="${niceName}.bigbed" /></link></display>

diff -r 4ae3f282a0d258fea48adca6e01537d25e291c68 -r 1fb11ee1db887886672a4b74982b9971420f67a4 display_applications/igb/bed.xml --- a/display_applications/igb/bed.xml +++ b/display_applications/igb/bed.xml @@ -8,7 +8,7 @@ #set nm=$bed_file_for_name.name ${re.sub('\W',"_",nm)} </param> - <param type="data" name="bed_file" url="${niceName}.bed" strip_https="True" /> + <param type="data" name="bed_file" url="${niceName}.bed" /><param type="template" name="bioviz" strip="True" > http://bioviz.org/igb/galaxy.html?version=$%7Bbed_file.dbkey%7D&loadresi...

diff -r 4ae3f282a0d258fea48adca6e01537d25e291c68 -r 1fb11ee1db887886672a4b74982b9971420f67a4 display_applications/igb/bedgraph.xml --- a/display_applications/igb/bedgraph.xml +++ b/display_applications/igb/bedgraph.xml @@ -8,7 +8,7 @@ #set nm=$bedgraph_file_for_name.name ${re.sub('\W',"_",nm)} </param> - <param type="data" name="bedgraph_file" url="${niceName}.bed.bedgraph" strip_https="True" /> + <param type="data" name="bedgraph_file" url="${niceName}.bed.bedgraph" /><param type="template" name="bioviz" strip="True" > http://bioviz.org/igb/galaxy.html?version=$%7Bbedgraph_file.dbkey%7D&loa...

diff -r 4ae3f282a0d258fea48adca6e01537d25e291c68 -r 1fb11ee1db887886672a4b74982b9971420f67a4 display_applications/igb/bigwig.xml --- a/display_applications/igb/bigwig.xml +++ b/display_applications/igb/bigwig.xml @@ -8,7 +8,7 @@ #set nm=$bigwig_file_for_name.name ${re.sub('\W',"_",nm)} </param> - <param type="data" name="bigwig_file" url="${niceName}.bigwig" strip_https="True" /> + <param type="data" name="bigwig_file" url="${niceName}.bigwig" /><!--<param type="template" name="position" strip="True" > #set chrom, start, end = $bigwig_file.datatype.get_estimated_display_viewport( $bigwig_file ) #if $chrom is not None:

diff -r 4ae3f282a0d258fea48adca6e01537d25e291c68 -r 1fb11ee1db887886672a4b74982b9971420f67a4 display_applications/igb/gtf.xml --- a/display_applications/igb/gtf.xml +++ b/display_applications/igb/gtf.xml @@ -8,7 +8,7 @@ #set nm=$gtf_file_for_name.name ${re.sub('\W',"_",nm)} </param> - <param type="data" name="gtf_file" url="${niceName}.gtf" strip_https="True" /> + <param type="data" name="gtf_file" url="${niceName}.gtf" /><param type="template" name="bioviz" strip="True" > http://bioviz.org/igb/galaxy.html?version=$%7Bgtf_file.dbkey%7D&loadresi...

diff -r 4ae3f282a0d258fea48adca6e01537d25e291c68 -r 1fb11ee1db887886672a4b74982b9971420f67a4 display_applications/igb/wig.xml --- a/display_applications/igb/wig.xml +++ b/display_applications/igb/wig.xml @@ -8,7 +8,7 @@ #set nm=$wig_file_for_name.name ${re.sub('\W',"_",nm)} </param> - <param type="data" name="wig_file" url="${niceName}.wig" strip_https="True" /> + <param type="data" name="wig_file" url="${niceName}.wig" /><param type="template" name="position" strip="True" > #set chrom, start, end = $wig_file.datatype.get_estimated_display_viewport( $wig_file ) #if $chrom is not None:

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