2 new commits in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/05c643a133ec/ changeset: 05c643a133ec user: fubar date: 2012-08-11 01:36:29 summary: Unicode/raw for re.sub string in rgFastQC.py affected #: 1 file diff -r 0a800e817e84abba99331e784f622dd3ce54e900 -r 05c643a133ec9421c252647fb1eedc96f2940da5 tools/rgenetics/rgFastQC.py --- a/tools/rgenetics/rgFastQC.py +++ b/tools/rgenetics/rgFastQC.py @@ -56,7 +56,7 @@ cl.append('-c %s' % self.opts.contaminants) # patch suggested by bwlang https://bitbucket.org/galaxy/galaxy-central/pull-request/30 # use a symlink in a temporary directory so that the FastQC report reflects the history input file name - fastqinfilename = re.sub('[^a-zA-Z0-9_\-\.]', '_', os.path.basename(self.opts.inputfilename)) + fastqinfilename = re.sub(ru'[^a-zA-Z0-9_\-\.]', '_', os.path.basename(self.opts.inputfilename)) link_name = os.path.join(self.opts.outputdir, fastqinfilename) os.symlink(self.opts.input, link_name) cl.append(link_name) https://bitbucket.org/galaxy/galaxy-central/changeset/bb76489b5541/ changeset: bb76489b5541 user: fubar date: 2012-08-11 01:42:48 summary: Added unicode and raw flags to the re.sub string - not tested with unicode name yet.. affected #: 1 file diff -r 05c643a133ec9421c252647fb1eedc96f2940da5 -r bb76489b554107f534df7e0f829e60308fea719a tools/rgenetics/rgFastQC.py --- a/tools/rgenetics/rgFastQC.py +++ b/tools/rgenetics/rgFastQC.py @@ -56,7 +56,7 @@ cl.append('-c %s' % self.opts.contaminants) # patch suggested by bwlang https://bitbucket.org/galaxy/galaxy-central/pull-request/30 # use a symlink in a temporary directory so that the FastQC report reflects the history input file name - fastqinfilename = re.sub(ru'[^a-zA-Z0-9_\-\.]', '_', os.path.basename(self.opts.inputfilename)) + fastqinfilename = re.sub(ur'[^a-zA-Z0-9_\-\.]', '_', os.path.basename(self.opts.inputfilename)) link_name = os.path.join(self.opts.outputdir, fastqinfilename) os.symlink(self.opts.input, link_name) cl.append(link_name) Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.