Branch: refs/heads/release_15.03 Home: https://github.com/galaxyproject/galaxy Commit: ca123a4f2674351e01235bab545559b299b99ff9 https://github.com/galaxyproject/galaxy/commit/ca123a4f2674351e01235bab54555... Author: Nate Coraor <nate@bx.psu.edu> Date: 2016-02-24 (Wed, 24 Feb 2016) Changed paths: M lib/galaxy/util/__init__.py Log Message: ----------- Add a safe_relpath util function for ensuring a path does not reference an absolute or parent directory Commit: 3b963226a110b8de8aa11d3c4e053a220bbcba53 https://github.com/galaxyproject/galaxy/commit/3b963226a110b8de8aa11d3c4e053... Author: Nate Coraor <nate@bx.psu.edu> Date: 2016-02-24 (Wed, 24 Feb 2016) Changed paths: M lib/galaxy/exceptions/__init__.py M lib/galaxy/exceptions/error_codes.json M lib/galaxy/tools/imp_exp/__init__.py M lib/galaxy/tools/imp_exp/unpack_tar_gz_archive.py Log Message: ----------- Security fixes for history imports Commit: 5ab53c3fda3a43236b444a31aa408c9f5cb5c4c4 https://github.com/galaxyproject/galaxy/commit/5ab53c3fda3a43236b444a31aa408... Author: Nate Coraor <nate@bx.psu.edu> Date: 2016-02-24 (Wed, 24 Feb 2016) Changed paths: M lib/galaxy/util/__init__.py Log Message: ----------- Add a safe_relpath util function for ensuring a path does not reference an absolute or parent directory Commit: 88277c9723c558e2b2003f1b81c7f2d16143fcc6 https://github.com/galaxyproject/galaxy/commit/88277c9723c558e2b2003f1b81c7f... Author: Nate Coraor <nate@bx.psu.edu> Date: 2016-02-24 (Wed, 24 Feb 2016) Changed paths: M lib/galaxy/exceptions/__init__.py M lib/galaxy/exceptions/error_codes.json M lib/galaxy/tools/imp_exp/__init__.py M lib/galaxy/tools/imp_exp/unpack_tar_gz_archive.py Log Message: ----------- Security fixes for history imports Commit: d650055ca824d5cf8ab1ede389e9b3060c1f4094 https://github.com/galaxyproject/galaxy/commit/d650055ca824d5cf8ab1ede389e9b... Author: Nate Coraor <nate@bx.psu.edu> Date: 2016-02-24 (Wed, 24 Feb 2016) Changed paths: M lib/galaxy/objectstore/__init__.py M lib/galaxy/objectstore/rods.py M lib/galaxy/objectstore/s3.py Log Message: ----------- Security fixes for object store paths Commit: 32c910ac4021b0e65112d557a7f12d24e158171d https://github.com/galaxyproject/galaxy/commit/32c910ac4021b0e65112d557a7f12... Author: Nate Coraor <nate@bx.psu.edu> Date: 2016-02-24 (Wed, 24 Feb 2016) Changed paths: M lib/galaxy/objectstore/__init__.py M lib/galaxy/objectstore/rods.py M lib/galaxy/objectstore/s3.py Log Message: ----------- Security fixes for object store paths Commit: 37548ef8edb95d59fddd73283561e8b1a6588c10 https://github.com/galaxyproject/galaxy/commit/37548ef8edb95d59fddd73283561e... Author: Nate Coraor <nate@bx.psu.edu> Date: 2016-02-24 (Wed, 24 Feb 2016) Changed paths: M lib/galaxy/model/__init__.py M lib/galaxy/webapps/galaxy/controllers/requests_admin.py R templates/admin/requests/select_datasets_to_transfer.mako M templates/webapps/galaxy/requests/common/common.mako M templates/webapps/galaxy/requests/common/view_request_history.mako M templates/webapps/galaxy/requests/common/view_sample_datasets.mako Log Message: ----------- Remove sample tracking manual external service transfer due to security concerns Commit: 78f441b9c7bfd68f7b3ee030f4ffe4a95b5fdc58 https://github.com/galaxyproject/galaxy/commit/78f441b9c7bfd68f7b3ee030f4ffe... Author: Nate Coraor <nate@bx.psu.edu> Date: 2016-02-24 (Wed, 24 Feb 2016) Changed paths: M lib/galaxy/model/__init__.py M lib/galaxy/webapps/galaxy/controllers/requests_admin.py R templates/admin/requests/select_datasets_to_transfer.mako M templates/webapps/galaxy/requests/common/common.mako M templates/webapps/galaxy/requests/common/view_request_history.mako M templates/webapps/galaxy/requests/common/view_sample_datasets.mako Log Message: ----------- Remove sample tracking manual external service transfer due to security concerns Commit: 4f3397fa0ab187a4b5c32e1268265925fc1a8753 https://github.com/galaxyproject/galaxy/commit/4f3397fa0ab187a4b5c32e1268265... Author: Nate Coraor <nate@bx.psu.edu> Date: 2016-02-24 (Wed, 24 Feb 2016) Changed paths: M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py M lib/galaxy/webapps/tool_shed/controllers/repository.py M lib/tool_shed/util/shed_util_common.py M templates/admin/tool_shed_repository/common.mako M templates/webapps/tool_shed/repository/common.mako Log Message: ----------- Security fixes for tool shed repository browsing Commit: 8468871ee481598a84888b5329139590ec75e98d https://github.com/galaxyproject/galaxy/commit/8468871ee481598a84888b5329139... Author: Nate Coraor <nate@bx.psu.edu> Date: 2016-02-24 (Wed, 24 Feb 2016) Changed paths: M lib/galaxy/util/__init__.py Log Message: ----------- Add a safe_relpath util function for ensuring a path does not reference an absolute or parent directory Commit: cee85bae67377d3fad42bec5b4ebb022aaf7b2c7 https://github.com/galaxyproject/galaxy/commit/cee85bae67377d3fad42bec5b4ebb... Author: Nate Coraor <nate@bx.psu.edu> Date: 2016-02-24 (Wed, 24 Feb 2016) Changed paths: M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py M lib/galaxy/webapps/tool_shed/controllers/repository.py M lib/tool_shed/util/shed_util_common.py M templates/admin/tool_shed_repository/common.mako M templates/webapps/tool_shed/repository/common.mako Log Message: ----------- Security fixes for tool shed repository browsing Commit: 4845a39071ab4e2652e564efdf7647a942563603 https://github.com/galaxyproject/galaxy/commit/4845a39071ab4e2652e564efdf764... Author: Nate Coraor <nate@bx.psu.edu> Date: 2016-02-24 (Wed, 24 Feb 2016) Changed paths: M lib/galaxy/webapps/tool_shed/framework/middleware/hg.py M lib/tool_shed/capsule/capsule_manager.py M lib/tool_shed/util/commit_util.py M lib/tool_shed/util/repository_content_util.py Log Message: ----------- Security fixes for tool shed hg push and capsule/tarball uploads Commit: ef4a9f6e2114e69f6ea3167e99a857f2ea4d28af https://github.com/galaxyproject/galaxy/commit/ef4a9f6e2114e69f6ea3167e99a85... Author: Nate Coraor <nate@bx.psu.edu> Date: 2016-02-24 (Wed, 24 Feb 2016) Changed paths: M lib/galaxy/exceptions/__init__.py M lib/galaxy/exceptions/error_codes.json M lib/galaxy/tools/imp_exp/__init__.py M lib/galaxy/tools/imp_exp/unpack_tar_gz_archive.py Log Message: ----------- Security fixes for history imports Commit: 61cd045ffa947a69abacddea459f725ba569584a https://github.com/galaxyproject/galaxy/commit/61cd045ffa947a69abacddea459f7... Author: Nate Coraor <nate@bx.psu.edu> Date: 2016-02-24 (Wed, 24 Feb 2016) Log Message: ----------- Merge branch 'release_14.10' into release_15.01 Commit: c8963786d53efd2cf3b359b2f9a000e00688285f https://github.com/galaxyproject/galaxy/commit/c8963786d53efd2cf3b359b2f9a00... Author: Nate Coraor <nate@bx.psu.edu> Date: 2016-02-24 (Wed, 24 Feb 2016) Changed paths: M lib/galaxy/objectstore/__init__.py M lib/galaxy/objectstore/rods.py M lib/galaxy/objectstore/s3.py Log Message: ----------- Security fixes for object store paths Commit: d4b94722f992c9309aa2ec5bfa5bce2dacd9b218 https://github.com/galaxyproject/galaxy/commit/d4b94722f992c9309aa2ec5bfa5bc... Author: Nate Coraor <nate@bx.psu.edu> Date: 2016-02-24 (Wed, 24 Feb 2016) Changed paths: M lib/galaxy/model/__init__.py M lib/galaxy/webapps/galaxy/controllers/requests_admin.py R templates/admin/requests/select_datasets_to_transfer.mako M templates/webapps/galaxy/requests/common/common.mako M templates/webapps/galaxy/requests/common/view_request_history.mako M templates/webapps/galaxy/requests/common/view_sample_datasets.mako Log Message: ----------- Remove sample tracking manual external service transfer due to security concerns Commit: 626cade512894e54c5b3e5257543f267a1826a71 https://github.com/galaxyproject/galaxy/commit/626cade512894e54c5b3e5257543f... Author: Nate Coraor <nate@bx.psu.edu> Date: 2016-02-24 (Wed, 24 Feb 2016) Changed paths: M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py M lib/galaxy/webapps/tool_shed/controllers/repository.py M lib/tool_shed/util/shed_util_common.py M templates/admin/tool_shed_repository/common.mako M templates/webapps/tool_shed/repository/common.mako Log Message: ----------- Security fixes for tool shed repository browsing Commit: 581808aa98a6058a4bdbe13c21271ca4b0d3ef77 https://github.com/galaxyproject/galaxy/commit/581808aa98a6058a4bdbe13c21271... Author: Nate Coraor <nate@bx.psu.edu> Date: 2016-02-24 (Wed, 24 Feb 2016) Changed paths: M lib/galaxy/webapps/tool_shed/framework/middleware/hg.py M lib/tool_shed/capsule/capsule_manager.py M lib/tool_shed/util/commit_util.py M lib/tool_shed/util/repository_content_util.py Log Message: ----------- Security fixes for tool shed hg push and capsule/tarball uploads Commit: f8a1aef76c022612a8a28938e1d57412348884ab https://github.com/galaxyproject/galaxy/commit/f8a1aef76c022612a8a28938e1d57... Author: Nate Coraor <nate@bx.psu.edu> Date: 2016-02-24 (Wed, 24 Feb 2016) Log Message: ----------- Merge branch 'release_15.01' into release_15.03 Commit: 0122040fad865487e2377cee35360af49e37d0e8 https://github.com/galaxyproject/galaxy/commit/0122040fad865487e2377cee35360... Author: Nate Coraor <nate@bx.psu.edu> Date: 2016-02-24 (Wed, 24 Feb 2016) Changed paths: M lib/galaxy/version.py Log Message: ----------- Update version to 15.03.4 Compare: https://github.com/galaxyproject/galaxy/compare/b23acda7d865...0122040fad86