Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 2f020ef9441d3eec8f0d517fe9f3412df1bfb8d5 https://github.com/galaxyproject/galaxy/commit/2f020ef9441d3eec8f0d517fe9f34... Author: John Chilton <jmchilton@gmail.com> Date: 2018-02-05 (Mon, 05 Feb 2018) Changed paths: M lib/galaxy/tools/parser/xml.py Log Message: ----------- Fix tool stdio level parsing for OOM level. Backend was enhanced to allow this in #5196 and a new entry point to setting exit code for such exit conditions but the custom parsing wasn't updated to allow it. Thanks to @nsoranzo for the catch. Commit: d537b2ac6033d831e41e1db0412fdd86d7ad9b4e https://github.com/galaxyproject/galaxy/commit/d537b2ac6033d831e41e1db0412fd... Author: Martin Cech <marten@bx.psu.edu> Date: 2018-02-05 (Mon, 05 Feb 2018) Changed paths: A static/maps/admin.toolshed.js.map A static/maps/galaxy.interactive_environments.js.map A static/maps/galaxy.js.map A static/maps/galaxy.library.js.map A static/maps/galaxy.pages.js.map A static/maps/i18n.js.map A static/maps/layout/generic-nav-view.js.map A static/maps/layout/masthead.js.map A static/maps/layout/menu.js.map A static/maps/layout/modal.js.map A static/maps/layout/page.js.map A static/maps/layout/panel.js.map A static/maps/layout/router.js.map A static/maps/layout/scratchbook.js.map A static/maps/legacy/grid/grid-model.js.map A static/maps/legacy/grid/grid-template.js.map A static/maps/legacy/grid/grid-view.js.map A static/maps/mvc/annotation.js.map A static/maps/mvc/base-mvc.js.map A static/maps/mvc/base/controlled-fetch-collection.js.map A static/maps/mvc/collection/base-creator.js.map A static/maps/mvc/collection/collection-li-edit.js.map A static/maps/mvc/collection/collection-li.js.map A static/maps/mvc/collection/collection-model.js.map A static/maps/mvc/collection/collection-view-edit.js.map A static/maps/mvc/collection/collection-view.js.map A static/maps/mvc/collection/list-collection-creator.js.map A static/maps/mvc/collection/list-of-pairs-collection-creator.js.map A static/maps/mvc/collection/pair-collection-creator.js.map A static/maps/mvc/dataset/data.js.map A static/maps/mvc/dataset/dataset-choice.js.map A static/maps/mvc/dataset/dataset-edit-attributes.js.map A static/maps/mvc/dataset/dataset-error.js.map A static/maps/mvc/dataset/dataset-li-edit.js.map A static/maps/mvc/dataset/dataset-li.js.map A static/maps/mvc/dataset/dataset-list.js.map A static/maps/mvc/dataset/dataset-model.js.map A static/maps/mvc/dataset/states.js.map A static/maps/mvc/form/form-data.js.map A static/maps/mvc/form/form-input.js.map A static/maps/mvc/form/form-parameters.js.map A static/maps/mvc/form/form-repeat.js.map A static/maps/mvc/form/form-section.js.map A static/maps/mvc/form/form-view.js.map A static/maps/mvc/form/form-wrapper.js.map A static/maps/mvc/grid/grid-model.js.map A static/maps/mvc/grid/grid-shared.js.map A static/maps/mvc/grid/grid-template.js.map A static/maps/mvc/grid/grid-view.js.map A static/maps/mvc/history/copy-dialog.js.map A static/maps/mvc/history/hda-li-edit.js.map A static/maps/mvc/history/hda-li.js.map A static/maps/mvc/history/hda-model.js.map A static/maps/mvc/history/hdca-li-edit.js.map A static/maps/mvc/history/hdca-li.js.map A static/maps/mvc/history/hdca-model.js.map A static/maps/mvc/history/history-content-model.js.map A static/maps/mvc/history/history-contents.js.map A static/maps/mvc/history/history-item-li.js.map A static/maps/mvc/history/history-list.js.map A static/maps/mvc/history/history-model.js.map A static/maps/mvc/history/history-preferences.js.map A static/maps/mvc/history/history-structure-view.js.map A static/maps/mvc/history/history-view-annotated.js.map A static/maps/mvc/history/history-view-edit-current.js.map A static/maps/mvc/history/history-view-edit.js.map A static/maps/mvc/history/history-view.js.map A static/maps/mvc/history/job-dag.js.map A static/maps/mvc/history/job-states-model.js.map A static/maps/mvc/history/multi-panel.js.map A static/maps/mvc/history/options-menu.js.map A static/maps/mvc/job/job-li.js.map A static/maps/mvc/job/job-model.js.map A static/maps/mvc/job/job-params.js.map A static/maps/mvc/lazy/lazy-limited.js.map A static/maps/mvc/library/library-dataset-view.js.map A static/maps/mvc/library/library-folder-view.js.map A static/maps/mvc/library/library-folderlist-view.js.map A static/maps/mvc/library/library-folderrow-view.js.map A static/maps/mvc/library/library-foldertoolbar-view.js.map A static/maps/mvc/library/library-library-view.js.map A static/maps/mvc/library/library-librarylist-view.js.map A static/maps/mvc/library/library-libraryrow-view.js.map A static/maps/mvc/library/library-librarytoolbar-view.js.map A static/maps/mvc/library/library-model.js.map A static/maps/mvc/library/library-util.js.map A static/maps/mvc/list/list-item.js.map A static/maps/mvc/list/list-view.js.map A static/maps/mvc/tag.js.map A static/maps/mvc/tool/tool-form-base.js.map A static/maps/mvc/tool/tool-form-composite.js.map A static/maps/mvc/tool/tool-form.js.map A static/maps/mvc/tool/tool-genomespace.js.map A static/maps/mvc/tool/tools.js.map A static/maps/mvc/toolshed/categories-view.js.map A static/maps/mvc/toolshed/repo-queue-view.js.map A static/maps/mvc/toolshed/repo-status-view.js.map A static/maps/mvc/toolshed/repositories-view.js.map A static/maps/mvc/toolshed/repository-queue-view.js.map A static/maps/mvc/toolshed/repository-view.js.map A static/maps/mvc/toolshed/shed-list-view.js.map A static/maps/mvc/toolshed/toolshed-model.js.map A static/maps/mvc/toolshed/util.js.map A static/maps/mvc/toolshed/workflows-view.js.map A static/maps/mvc/tours.js.map A static/maps/mvc/ui/error-modal.js.map A static/maps/mvc/ui/icon-button.js.map A static/maps/mvc/ui/popup-menu.js.map A static/maps/mvc/ui/ui-buttons.js.map A static/maps/mvc/ui/ui-color-picker.js.map A static/maps/mvc/ui/ui-drilldown.js.map A static/maps/mvc/ui/ui-frames.js.map A static/maps/mvc/ui/ui-list.js.map A static/maps/mvc/ui/ui-misc.js.map A static/maps/mvc/ui/ui-modal.js.map A static/maps/mvc/ui/ui-options.js.map A static/maps/mvc/ui/ui-popover.js.map A static/maps/mvc/ui/ui-portlet.js.map A static/maps/mvc/ui/ui-select-content.js.map A static/maps/mvc/ui/ui-select-default.js.map A static/maps/mvc/ui/ui-select-ftp.js.map A static/maps/mvc/ui/ui-select-genomespace.js.map A static/maps/mvc/ui/ui-select-library.js.map A static/maps/mvc/ui/ui-select.js.map A static/maps/mvc/ui/ui-slider.js.map A static/maps/mvc/ui/ui-table.js.map A static/maps/mvc/ui/ui-tabs.js.map A static/maps/mvc/ui/ui-thumbnails.js.map A static/maps/mvc/upload/collection/collection-row.js.map A static/maps/mvc/upload/collection/collection-view.js.map A static/maps/mvc/upload/composite/composite-row.js.map A static/maps/mvc/upload/composite/composite-view.js.map A static/maps/mvc/upload/default/default-row.js.map A static/maps/mvc/upload/default/default-view.js.map A static/maps/mvc/upload/upload-button.js.map A static/maps/mvc/upload/upload-extension.js.map A static/maps/mvc/upload/upload-ftp.js.map A static/maps/mvc/upload/upload-model.js.map A static/maps/mvc/upload/upload-settings.js.map A static/maps/mvc/upload/upload-view.js.map A static/maps/mvc/user/user-custom-builds.js.map A static/maps/mvc/user/user-model.js.map A static/maps/mvc/user/user-preferences.js.map A static/maps/mvc/user/user-quotameter.js.map A static/maps/mvc/visualization/visualization-model.js.map A static/maps/mvc/webhooks.js.map A static/maps/mvc/workflow/workflow-canvas.js.map A static/maps/mvc/workflow/workflow-connector.js.map A static/maps/mvc/workflow/workflow-forms.js.map A static/maps/mvc/workflow/workflow-icons.js.map A static/maps/mvc/workflow/workflow-manager.js.map A static/maps/mvc/workflow/workflow-model.js.map A static/maps/mvc/workflow/workflow-node.js.map A static/maps/mvc/workflow/workflow-terminals.js.map A static/maps/mvc/workflow/workflow-view-data.js.map A static/maps/mvc/workflow/workflow-view-node.js.map A static/maps/mvc/workflow/workflow-view-terminals.js.map A static/maps/mvc/workflow/workflow-view.js.map A static/maps/mvc/workflow/workflow.js.map A static/maps/nls/de/locale.js.map A static/maps/nls/es/locale.js.map A static/maps/nls/fr/locale.js.map A static/maps/nls/ja/locale.js.map A static/maps/nls/locale.js.map A static/maps/nls/zh/locale.js.map A static/maps/onload.js.map A static/maps/polyfills.js.map A static/maps/reports/run_stats.js.map A static/maps/toolshed/groups/group-detail-view.js.map A static/maps/toolshed/groups/group-list-view.js.map A static/maps/toolshed/groups/group-listrow-view.js.map A static/maps/toolshed/groups/group-model.js.map A static/maps/toolshed/toolshed.groups.js.map A static/maps/ui/autocom_tagging.js.map A static/maps/ui/editable-text.js.map A static/maps/ui/fa-icon-button.js.map A static/maps/ui/filter-control.js.map A static/maps/ui/hoverhighlight.js.map A static/maps/ui/loading-indicator.js.map A static/maps/ui/mode-button.js.map A static/maps/ui/pagination.js.map A static/maps/ui/peek-column-selector.js.map A static/maps/ui/popupmenu.js.map A static/maps/ui/scroll-panel.js.map A static/maps/ui/search-input.js.map A static/maps/utils/add-logging.js.map A static/maps/utils/ajax-queue.js.map A static/maps/utils/async-save-text.js.map A static/maps/utils/config.js.map A static/maps/utils/deferred.js.map A static/maps/utils/graph.js.map A static/maps/utils/levenshtein.js.map A static/maps/utils/localization.js.map A static/maps/utils/metrics-logger.js.map A static/maps/utils/natural-sort.js.map A static/maps/utils/query-string-parsing.js.map A static/maps/utils/uploadbox.js.map A static/maps/utils/utils.js.map A static/maps/viz/bbi-data-manager.js.map A static/maps/viz/circster.js.map A static/maps/viz/phyloviz.js.map A static/maps/viz/sweepster.js.map A static/maps/viz/trackster.js.map A static/maps/viz/trackster/filters.js.map A static/maps/viz/trackster/painters.js.map A static/maps/viz/trackster/slotting.js.map A static/maps/viz/trackster/tracks.js.map A static/maps/viz/trackster/util.js.map A static/maps/viz/visualization.js.map A static/maps/viz/viz_views.js.map M static/scripts/admin.toolshed.js M static/scripts/bundled/admin.bundled.js A static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js A static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/extended.bundled.js A static/scripts/bundled/extended.bundled.js.map M static/scripts/bundled/libs.bundled.js A static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js A static/scripts/bundled/login.bundled.js.map M static/scripts/galaxy.interactive_environments.js M static/scripts/galaxy.js M static/scripts/galaxy.library.js M static/scripts/galaxy.pages.js M static/scripts/i18n.js M static/scripts/layout/generic-nav-view.js M static/scripts/layout/masthead.js M static/scripts/layout/menu.js M static/scripts/layout/modal.js M static/scripts/layout/page.js M static/scripts/layout/panel.js M static/scripts/layout/router.js M static/scripts/layout/scratchbook.js M static/scripts/legacy/grid/grid-model.js M static/scripts/legacy/grid/grid-template.js M static/scripts/legacy/grid/grid-view.js M static/scripts/mvc/annotation.js M static/scripts/mvc/base-mvc.js M static/scripts/mvc/base/controlled-fetch-collection.js M static/scripts/mvc/collection/base-creator.js M static/scripts/mvc/collection/collection-li-edit.js M static/scripts/mvc/collection/collection-li.js M static/scripts/mvc/collection/collection-model.js M static/scripts/mvc/collection/collection-view-edit.js M static/scripts/mvc/collection/collection-view.js M static/scripts/mvc/collection/list-collection-creator.js M static/scripts/mvc/collection/list-of-pairs-collection-creator.js M static/scripts/mvc/collection/pair-collection-creator.js M static/scripts/mvc/dataset/data.js M static/scripts/mvc/dataset/dataset-choice.js M static/scripts/mvc/dataset/dataset-edit-attributes.js M static/scripts/mvc/dataset/dataset-error.js M static/scripts/mvc/dataset/dataset-li-edit.js M static/scripts/mvc/dataset/dataset-li.js M static/scripts/mvc/dataset/dataset-list.js M static/scripts/mvc/dataset/dataset-model.js M static/scripts/mvc/dataset/states.js M static/scripts/mvc/form/form-data.js M static/scripts/mvc/form/form-input.js M static/scripts/mvc/form/form-parameters.js M static/scripts/mvc/form/form-repeat.js M static/scripts/mvc/form/form-section.js M static/scripts/mvc/form/form-view.js M static/scripts/mvc/form/form-wrapper.js M static/scripts/mvc/grid/grid-model.js M static/scripts/mvc/grid/grid-shared.js M static/scripts/mvc/grid/grid-template.js M static/scripts/mvc/grid/grid-view.js M static/scripts/mvc/history/copy-dialog.js M static/scripts/mvc/history/hda-li-edit.js M static/scripts/mvc/history/hda-li.js M static/scripts/mvc/history/hda-model.js M static/scripts/mvc/history/hdca-li-edit.js M static/scripts/mvc/history/hdca-li.js M static/scripts/mvc/history/hdca-model.js M static/scripts/mvc/history/history-content-model.js M static/scripts/mvc/history/history-contents.js M static/scripts/mvc/history/history-item-li.js M static/scripts/mvc/history/history-list.js M static/scripts/mvc/history/history-model.js M static/scripts/mvc/history/history-preferences.js M static/scripts/mvc/history/history-structure-view.js M static/scripts/mvc/history/history-view-annotated.js M static/scripts/mvc/history/history-view-edit-current.js M static/scripts/mvc/history/history-view-edit.js M static/scripts/mvc/history/history-view.js M static/scripts/mvc/history/job-dag.js M static/scripts/mvc/history/job-states-model.js M static/scripts/mvc/history/multi-panel.js M static/scripts/mvc/history/options-menu.js M static/scripts/mvc/job/job-li.js M static/scripts/mvc/job/job-model.js M static/scripts/mvc/job/job-params.js M static/scripts/mvc/lazy/lazy-limited.js M static/scripts/mvc/library/library-dataset-view.js M static/scripts/mvc/library/library-folder-view.js M static/scripts/mvc/library/library-folderlist-view.js M static/scripts/mvc/library/library-folderrow-view.js M static/scripts/mvc/library/library-foldertoolbar-view.js M static/scripts/mvc/library/library-library-view.js M static/scripts/mvc/library/library-librarylist-view.js M static/scripts/mvc/library/library-libraryrow-view.js M static/scripts/mvc/library/library-librarytoolbar-view.js M static/scripts/mvc/library/library-model.js M static/scripts/mvc/library/library-util.js M static/scripts/mvc/list/list-item.js M static/scripts/mvc/list/list-view.js M static/scripts/mvc/tag.js M static/scripts/mvc/tool/tool-form-base.js M static/scripts/mvc/tool/tool-form-composite.js M static/scripts/mvc/tool/tool-form.js M static/scripts/mvc/tool/tool-genomespace.js M static/scripts/mvc/tool/tools.js M static/scripts/mvc/toolshed/categories-view.js M static/scripts/mvc/toolshed/repo-queue-view.js M static/scripts/mvc/toolshed/repo-status-view.js M static/scripts/mvc/toolshed/repositories-view.js M static/scripts/mvc/toolshed/repository-queue-view.js M static/scripts/mvc/toolshed/repository-view.js M static/scripts/mvc/toolshed/shed-list-view.js M static/scripts/mvc/toolshed/toolshed-model.js M static/scripts/mvc/toolshed/util.js M static/scripts/mvc/toolshed/workflows-view.js M static/scripts/mvc/tours.js M static/scripts/mvc/ui/error-modal.js M static/scripts/mvc/ui/icon-button.js M static/scripts/mvc/ui/popup-menu.js M static/scripts/mvc/ui/ui-buttons.js M static/scripts/mvc/ui/ui-color-picker.js M static/scripts/mvc/ui/ui-drilldown.js M static/scripts/mvc/ui/ui-frames.js M static/scripts/mvc/ui/ui-list.js M static/scripts/mvc/ui/ui-misc.js M static/scripts/mvc/ui/ui-modal.js M static/scripts/mvc/ui/ui-options.js M static/scripts/mvc/ui/ui-popover.js M static/scripts/mvc/ui/ui-portlet.js M static/scripts/mvc/ui/ui-select-content.js M static/scripts/mvc/ui/ui-select-default.js M static/scripts/mvc/ui/ui-select-ftp.js M static/scripts/mvc/ui/ui-select-genomespace.js M static/scripts/mvc/ui/ui-select-library.js M static/scripts/mvc/ui/ui-select.js M static/scripts/mvc/ui/ui-slider.js M static/scripts/mvc/ui/ui-table.js M static/scripts/mvc/ui/ui-tabs.js M static/scripts/mvc/ui/ui-thumbnails.js M static/scripts/mvc/upload/collection/collection-row.js M static/scripts/mvc/upload/collection/collection-view.js M static/scripts/mvc/upload/composite/composite-row.js M static/scripts/mvc/upload/composite/composite-view.js M static/scripts/mvc/upload/default/default-row.js M static/scripts/mvc/upload/default/default-view.js M static/scripts/mvc/upload/upload-button.js M static/scripts/mvc/upload/upload-extension.js M static/scripts/mvc/upload/upload-ftp.js M static/scripts/mvc/upload/upload-model.js M static/scripts/mvc/upload/upload-settings.js M static/scripts/mvc/upload/upload-view.js M static/scripts/mvc/user/user-custom-builds.js M static/scripts/mvc/user/user-model.js M static/scripts/mvc/user/user-preferences.js M static/scripts/mvc/user/user-quotameter.js M static/scripts/mvc/visualization/visualization-model.js M static/scripts/mvc/webhooks.js M static/scripts/mvc/workflow/workflow-canvas.js M static/scripts/mvc/workflow/workflow-connector.js M static/scripts/mvc/workflow/workflow-forms.js M static/scripts/mvc/workflow/workflow-icons.js M static/scripts/mvc/workflow/workflow-manager.js M static/scripts/mvc/workflow/workflow-model.js M static/scripts/mvc/workflow/workflow-node.js M static/scripts/mvc/workflow/workflow-terminals.js M static/scripts/mvc/workflow/workflow-view-data.js M static/scripts/mvc/workflow/workflow-view-node.js M static/scripts/mvc/workflow/workflow-view-terminals.js M static/scripts/mvc/workflow/workflow-view.js M static/scripts/mvc/workflow/workflow.js M static/scripts/nls/de/locale.js M static/scripts/nls/es/locale.js M static/scripts/nls/fr/locale.js M static/scripts/nls/ja/locale.js M static/scripts/nls/locale.js M static/scripts/nls/zh/locale.js M static/scripts/onload.js M static/scripts/polyfills.js M static/scripts/reports/run_stats.js M static/scripts/toolshed/groups/group-detail-view.js M static/scripts/toolshed/groups/group-list-view.js M static/scripts/toolshed/groups/group-listrow-view.js M static/scripts/toolshed/groups/group-model.js M static/scripts/toolshed/toolshed.groups.js M static/scripts/ui/autocom_tagging.js M static/scripts/ui/editable-text.js M static/scripts/ui/fa-icon-button.js M static/scripts/ui/filter-control.js M static/scripts/ui/hoverhighlight.js M static/scripts/ui/loading-indicator.js M static/scripts/ui/mode-button.js M static/scripts/ui/pagination.js M static/scripts/ui/peek-column-selector.js M static/scripts/ui/popupmenu.js M static/scripts/ui/scroll-panel.js M static/scripts/ui/search-input.js M static/scripts/utils/add-logging.js M static/scripts/utils/ajax-queue.js M static/scripts/utils/async-save-text.js M static/scripts/utils/config.js M static/scripts/utils/deferred.js M static/scripts/utils/graph.js M static/scripts/utils/levenshtein.js M static/scripts/utils/localization.js M static/scripts/utils/metrics-logger.js M static/scripts/utils/natural-sort.js M static/scripts/utils/query-string-parsing.js M static/scripts/utils/uploadbox.js M static/scripts/utils/utils.js M static/scripts/viz/bbi-data-manager.js M static/scripts/viz/circster.js M static/scripts/viz/phyloviz.js M static/scripts/viz/sweepster.js M static/scripts/viz/trackster.js M static/scripts/viz/trackster/filters.js M static/scripts/viz/trackster/painters.js M static/scripts/viz/trackster/slotting.js M static/scripts/viz/trackster/tracks.js M static/scripts/viz/trackster/util.js M static/scripts/viz/visualization.js M static/scripts/viz/viz_views.js M static/style/blue/base.css Log Message: ----------- build client for release with maps Commit: c3ada7f16973718f49ffeb1de8dc44f882ee9fd2 https://github.com/galaxyproject/galaxy/commit/c3ada7f16973718f49ffeb1de8dc4... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-05 (Mon, 05 Feb 2018) Changed paths: M lib/galaxy/tools/parser/xml.py Log Message: ----------- Merge pull request #5460 from jmchilton/fix_oom_parse [18.01] Fix tool stdio level parsing for OOM level. Commit: c2abd3f813bde3be116e692f49347c71164f97a2 https://github.com/galaxyproject/galaxy/commit/c2abd3f813bde3be116e692f49347... Author: Nate Coraor <nate@bx.psu.edu> Date: 2018-02-05 (Mon, 05 Feb 2018) Changed paths: A static/maps/admin.toolshed.js.map A static/maps/galaxy.interactive_environments.js.map A static/maps/galaxy.js.map A static/maps/galaxy.library.js.map A static/maps/galaxy.pages.js.map A static/maps/i18n.js.map A static/maps/layout/generic-nav-view.js.map A static/maps/layout/masthead.js.map A static/maps/layout/menu.js.map A static/maps/layout/modal.js.map A static/maps/layout/page.js.map A static/maps/layout/panel.js.map A static/maps/layout/router.js.map A static/maps/layout/scratchbook.js.map A static/maps/legacy/grid/grid-model.js.map A static/maps/legacy/grid/grid-template.js.map A static/maps/legacy/grid/grid-view.js.map A static/maps/mvc/annotation.js.map A static/maps/mvc/base-mvc.js.map A static/maps/mvc/base/controlled-fetch-collection.js.map A static/maps/mvc/collection/base-creator.js.map A static/maps/mvc/collection/collection-li-edit.js.map A static/maps/mvc/collection/collection-li.js.map A static/maps/mvc/collection/collection-model.js.map A static/maps/mvc/collection/collection-view-edit.js.map A static/maps/mvc/collection/collection-view.js.map A static/maps/mvc/collection/list-collection-creator.js.map A static/maps/mvc/collection/list-of-pairs-collection-creator.js.map A static/maps/mvc/collection/pair-collection-creator.js.map A static/maps/mvc/dataset/data.js.map A static/maps/mvc/dataset/dataset-choice.js.map A static/maps/mvc/dataset/dataset-edit-attributes.js.map A static/maps/mvc/dataset/dataset-error.js.map A static/maps/mvc/dataset/dataset-li-edit.js.map A static/maps/mvc/dataset/dataset-li.js.map A static/maps/mvc/dataset/dataset-list.js.map A static/maps/mvc/dataset/dataset-model.js.map A static/maps/mvc/dataset/states.js.map A static/maps/mvc/form/form-data.js.map A static/maps/mvc/form/form-input.js.map A static/maps/mvc/form/form-parameters.js.map A static/maps/mvc/form/form-repeat.js.map A static/maps/mvc/form/form-section.js.map A static/maps/mvc/form/form-view.js.map A static/maps/mvc/form/form-wrapper.js.map A static/maps/mvc/grid/grid-model.js.map A static/maps/mvc/grid/grid-shared.js.map A static/maps/mvc/grid/grid-template.js.map A static/maps/mvc/grid/grid-view.js.map A static/maps/mvc/history/copy-dialog.js.map A static/maps/mvc/history/hda-li-edit.js.map A static/maps/mvc/history/hda-li.js.map A static/maps/mvc/history/hda-model.js.map A static/maps/mvc/history/hdca-li-edit.js.map A static/maps/mvc/history/hdca-li.js.map A static/maps/mvc/history/hdca-model.js.map A static/maps/mvc/history/history-content-model.js.map A static/maps/mvc/history/history-contents.js.map A static/maps/mvc/history/history-item-li.js.map A static/maps/mvc/history/history-list.js.map A static/maps/mvc/history/history-model.js.map A static/maps/mvc/history/history-preferences.js.map A static/maps/mvc/history/history-structure-view.js.map A static/maps/mvc/history/history-view-annotated.js.map A static/maps/mvc/history/history-view-edit-current.js.map A static/maps/mvc/history/history-view-edit.js.map A static/maps/mvc/history/history-view.js.map A static/maps/mvc/history/job-dag.js.map A static/maps/mvc/history/job-states-model.js.map A static/maps/mvc/history/multi-panel.js.map A static/maps/mvc/history/options-menu.js.map A static/maps/mvc/job/job-li.js.map A static/maps/mvc/job/job-model.js.map A static/maps/mvc/job/job-params.js.map A static/maps/mvc/lazy/lazy-limited.js.map A static/maps/mvc/library/library-dataset-view.js.map A static/maps/mvc/library/library-folder-view.js.map A static/maps/mvc/library/library-folderlist-view.js.map A static/maps/mvc/library/library-folderrow-view.js.map A static/maps/mvc/library/library-foldertoolbar-view.js.map A static/maps/mvc/library/library-library-view.js.map A static/maps/mvc/library/library-librarylist-view.js.map A static/maps/mvc/library/library-libraryrow-view.js.map A static/maps/mvc/library/library-librarytoolbar-view.js.map A static/maps/mvc/library/library-model.js.map A static/maps/mvc/library/library-util.js.map A static/maps/mvc/list/list-item.js.map A static/maps/mvc/list/list-view.js.map A static/maps/mvc/tag.js.map A static/maps/mvc/tool/tool-form-base.js.map A static/maps/mvc/tool/tool-form-composite.js.map A static/maps/mvc/tool/tool-form.js.map A static/maps/mvc/tool/tool-genomespace.js.map A static/maps/mvc/tool/tools.js.map A static/maps/mvc/toolshed/categories-view.js.map A static/maps/mvc/toolshed/repo-queue-view.js.map A static/maps/mvc/toolshed/repo-status-view.js.map A static/maps/mvc/toolshed/repositories-view.js.map A static/maps/mvc/toolshed/repository-queue-view.js.map A static/maps/mvc/toolshed/repository-view.js.map A static/maps/mvc/toolshed/shed-list-view.js.map A static/maps/mvc/toolshed/toolshed-model.js.map A static/maps/mvc/toolshed/util.js.map A static/maps/mvc/toolshed/workflows-view.js.map A static/maps/mvc/tours.js.map A static/maps/mvc/ui/error-modal.js.map A static/maps/mvc/ui/icon-button.js.map A static/maps/mvc/ui/popup-menu.js.map A static/maps/mvc/ui/ui-buttons.js.map A static/maps/mvc/ui/ui-color-picker.js.map A static/maps/mvc/ui/ui-drilldown.js.map A static/maps/mvc/ui/ui-frames.js.map A static/maps/mvc/ui/ui-list.js.map A static/maps/mvc/ui/ui-misc.js.map A static/maps/mvc/ui/ui-modal.js.map A static/maps/mvc/ui/ui-options.js.map A static/maps/mvc/ui/ui-popover.js.map A static/maps/mvc/ui/ui-portlet.js.map A static/maps/mvc/ui/ui-select-content.js.map A static/maps/mvc/ui/ui-select-default.js.map A static/maps/mvc/ui/ui-select-ftp.js.map A static/maps/mvc/ui/ui-select-genomespace.js.map A static/maps/mvc/ui/ui-select-library.js.map A static/maps/mvc/ui/ui-select.js.map A static/maps/mvc/ui/ui-slider.js.map A static/maps/mvc/ui/ui-table.js.map A static/maps/mvc/ui/ui-tabs.js.map A static/maps/mvc/ui/ui-thumbnails.js.map A static/maps/mvc/upload/collection/collection-row.js.map A static/maps/mvc/upload/collection/collection-view.js.map A static/maps/mvc/upload/composite/composite-row.js.map A static/maps/mvc/upload/composite/composite-view.js.map A static/maps/mvc/upload/default/default-row.js.map A static/maps/mvc/upload/default/default-view.js.map A static/maps/mvc/upload/upload-button.js.map A static/maps/mvc/upload/upload-extension.js.map A static/maps/mvc/upload/upload-ftp.js.map A static/maps/mvc/upload/upload-model.js.map A static/maps/mvc/upload/upload-settings.js.map A static/maps/mvc/upload/upload-view.js.map A static/maps/mvc/user/user-custom-builds.js.map A static/maps/mvc/user/user-model.js.map A static/maps/mvc/user/user-preferences.js.map A static/maps/mvc/user/user-quotameter.js.map A static/maps/mvc/visualization/visualization-model.js.map A static/maps/mvc/webhooks.js.map A static/maps/mvc/workflow/workflow-canvas.js.map A static/maps/mvc/workflow/workflow-connector.js.map A static/maps/mvc/workflow/workflow-forms.js.map A static/maps/mvc/workflow/workflow-icons.js.map A static/maps/mvc/workflow/workflow-manager.js.map A static/maps/mvc/workflow/workflow-model.js.map A static/maps/mvc/workflow/workflow-node.js.map A static/maps/mvc/workflow/workflow-terminals.js.map A static/maps/mvc/workflow/workflow-view-data.js.map A static/maps/mvc/workflow/workflow-view-node.js.map A static/maps/mvc/workflow/workflow-view-terminals.js.map A static/maps/mvc/workflow/workflow-view.js.map A static/maps/mvc/workflow/workflow.js.map A static/maps/nls/de/locale.js.map A static/maps/nls/es/locale.js.map A static/maps/nls/fr/locale.js.map A static/maps/nls/ja/locale.js.map A static/maps/nls/locale.js.map A static/maps/nls/zh/locale.js.map A static/maps/onload.js.map A static/maps/polyfills.js.map A static/maps/reports/run_stats.js.map A static/maps/toolshed/groups/group-detail-view.js.map A static/maps/toolshed/groups/group-list-view.js.map A static/maps/toolshed/groups/group-listrow-view.js.map A static/maps/toolshed/groups/group-model.js.map A static/maps/toolshed/toolshed.groups.js.map A static/maps/ui/autocom_tagging.js.map A static/maps/ui/editable-text.js.map A static/maps/ui/fa-icon-button.js.map A static/maps/ui/filter-control.js.map A static/maps/ui/hoverhighlight.js.map A static/maps/ui/loading-indicator.js.map A static/maps/ui/mode-button.js.map A static/maps/ui/pagination.js.map A static/maps/ui/peek-column-selector.js.map A static/maps/ui/popupmenu.js.map A static/maps/ui/scroll-panel.js.map A static/maps/ui/search-input.js.map A static/maps/utils/add-logging.js.map A static/maps/utils/ajax-queue.js.map A static/maps/utils/async-save-text.js.map A static/maps/utils/config.js.map A static/maps/utils/deferred.js.map A static/maps/utils/graph.js.map A static/maps/utils/levenshtein.js.map A static/maps/utils/localization.js.map A static/maps/utils/metrics-logger.js.map A static/maps/utils/natural-sort.js.map A static/maps/utils/query-string-parsing.js.map A static/maps/utils/uploadbox.js.map A static/maps/utils/utils.js.map A static/maps/viz/bbi-data-manager.js.map A static/maps/viz/circster.js.map A static/maps/viz/phyloviz.js.map A static/maps/viz/sweepster.js.map A static/maps/viz/trackster.js.map A static/maps/viz/trackster/filters.js.map A static/maps/viz/trackster/painters.js.map A static/maps/viz/trackster/slotting.js.map A static/maps/viz/trackster/tracks.js.map A static/maps/viz/trackster/util.js.map A static/maps/viz/visualization.js.map A static/maps/viz/viz_views.js.map M static/scripts/admin.toolshed.js M static/scripts/bundled/admin.bundled.js A static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js A static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/extended.bundled.js A static/scripts/bundled/extended.bundled.js.map M static/scripts/bundled/libs.bundled.js A static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js A static/scripts/bundled/login.bundled.js.map M static/scripts/galaxy.interactive_environments.js M static/scripts/galaxy.js M static/scripts/galaxy.library.js M static/scripts/galaxy.pages.js M static/scripts/i18n.js M static/scripts/layout/generic-nav-view.js M static/scripts/layout/masthead.js M static/scripts/layout/menu.js M static/scripts/layout/modal.js M static/scripts/layout/page.js M static/scripts/layout/panel.js M static/scripts/layout/router.js M static/scripts/layout/scratchbook.js M static/scripts/legacy/grid/grid-model.js M static/scripts/legacy/grid/grid-template.js M static/scripts/legacy/grid/grid-view.js M static/scripts/mvc/annotation.js M static/scripts/mvc/base-mvc.js M static/scripts/mvc/base/controlled-fetch-collection.js M static/scripts/mvc/collection/base-creator.js M static/scripts/mvc/collection/collection-li-edit.js M static/scripts/mvc/collection/collection-li.js M static/scripts/mvc/collection/collection-model.js M static/scripts/mvc/collection/collection-view-edit.js M static/scripts/mvc/collection/collection-view.js M static/scripts/mvc/collection/list-collection-creator.js M static/scripts/mvc/collection/list-of-pairs-collection-creator.js M static/scripts/mvc/collection/pair-collection-creator.js M static/scripts/mvc/dataset/data.js M static/scripts/mvc/dataset/dataset-choice.js M static/scripts/mvc/dataset/dataset-edit-attributes.js M static/scripts/mvc/dataset/dataset-error.js M static/scripts/mvc/dataset/dataset-li-edit.js M static/scripts/mvc/dataset/dataset-li.js M static/scripts/mvc/dataset/dataset-list.js M static/scripts/mvc/dataset/dataset-model.js M static/scripts/mvc/dataset/states.js M static/scripts/mvc/form/form-data.js M static/scripts/mvc/form/form-input.js M static/scripts/mvc/form/form-parameters.js M static/scripts/mvc/form/form-repeat.js M static/scripts/mvc/form/form-section.js M static/scripts/mvc/form/form-view.js M static/scripts/mvc/form/form-wrapper.js M static/scripts/mvc/grid/grid-model.js M static/scripts/mvc/grid/grid-shared.js M static/scripts/mvc/grid/grid-template.js M static/scripts/mvc/grid/grid-view.js M static/scripts/mvc/history/copy-dialog.js M static/scripts/mvc/history/hda-li-edit.js M static/scripts/mvc/history/hda-li.js M static/scripts/mvc/history/hda-model.js M static/scripts/mvc/history/hdca-li-edit.js M static/scripts/mvc/history/hdca-li.js M static/scripts/mvc/history/hdca-model.js M static/scripts/mvc/history/history-content-model.js M static/scripts/mvc/history/history-contents.js M static/scripts/mvc/history/history-item-li.js M static/scripts/mvc/history/history-list.js M static/scripts/mvc/history/history-model.js M static/scripts/mvc/history/history-preferences.js M static/scripts/mvc/history/history-structure-view.js M static/scripts/mvc/history/history-view-annotated.js M static/scripts/mvc/history/history-view-edit-current.js M static/scripts/mvc/history/history-view-edit.js M static/scripts/mvc/history/history-view.js M static/scripts/mvc/history/job-dag.js M static/scripts/mvc/history/job-states-model.js M static/scripts/mvc/history/multi-panel.js M static/scripts/mvc/history/options-menu.js M static/scripts/mvc/job/job-li.js M static/scripts/mvc/job/job-model.js M static/scripts/mvc/job/job-params.js M static/scripts/mvc/lazy/lazy-limited.js M static/scripts/mvc/library/library-dataset-view.js M static/scripts/mvc/library/library-folder-view.js M static/scripts/mvc/library/library-folderlist-view.js M static/scripts/mvc/library/library-folderrow-view.js M static/scripts/mvc/library/library-foldertoolbar-view.js M static/scripts/mvc/library/library-library-view.js M static/scripts/mvc/library/library-librarylist-view.js M static/scripts/mvc/library/library-libraryrow-view.js M static/scripts/mvc/library/library-librarytoolbar-view.js M static/scripts/mvc/library/library-model.js M static/scripts/mvc/library/library-util.js M static/scripts/mvc/list/list-item.js M static/scripts/mvc/list/list-view.js M static/scripts/mvc/tag.js M static/scripts/mvc/tool/tool-form-base.js M static/scripts/mvc/tool/tool-form-composite.js M static/scripts/mvc/tool/tool-form.js M static/scripts/mvc/tool/tool-genomespace.js M static/scripts/mvc/tool/tools.js M static/scripts/mvc/toolshed/categories-view.js M static/scripts/mvc/toolshed/repo-queue-view.js M static/scripts/mvc/toolshed/repo-status-view.js M static/scripts/mvc/toolshed/repositories-view.js M static/scripts/mvc/toolshed/repository-queue-view.js M static/scripts/mvc/toolshed/repository-view.js M static/scripts/mvc/toolshed/shed-list-view.js M static/scripts/mvc/toolshed/toolshed-model.js M static/scripts/mvc/toolshed/util.js M static/scripts/mvc/toolshed/workflows-view.js M static/scripts/mvc/tours.js M static/scripts/mvc/ui/error-modal.js M static/scripts/mvc/ui/icon-button.js M static/scripts/mvc/ui/popup-menu.js M static/scripts/mvc/ui/ui-buttons.js M static/scripts/mvc/ui/ui-color-picker.js M static/scripts/mvc/ui/ui-drilldown.js M static/scripts/mvc/ui/ui-frames.js M static/scripts/mvc/ui/ui-list.js M static/scripts/mvc/ui/ui-misc.js M static/scripts/mvc/ui/ui-modal.js M static/scripts/mvc/ui/ui-options.js M static/scripts/mvc/ui/ui-popover.js M static/scripts/mvc/ui/ui-portlet.js M static/scripts/mvc/ui/ui-select-content.js M static/scripts/mvc/ui/ui-select-default.js M static/scripts/mvc/ui/ui-select-ftp.js M static/scripts/mvc/ui/ui-select-genomespace.js M static/scripts/mvc/ui/ui-select-library.js M static/scripts/mvc/ui/ui-select.js M static/scripts/mvc/ui/ui-slider.js M static/scripts/mvc/ui/ui-table.js M static/scripts/mvc/ui/ui-tabs.js M static/scripts/mvc/ui/ui-thumbnails.js M static/scripts/mvc/upload/collection/collection-row.js M static/scripts/mvc/upload/collection/collection-view.js M static/scripts/mvc/upload/composite/composite-row.js M static/scripts/mvc/upload/composite/composite-view.js M static/scripts/mvc/upload/default/default-row.js M static/scripts/mvc/upload/default/default-view.js M static/scripts/mvc/upload/upload-button.js M static/scripts/mvc/upload/upload-extension.js M static/scripts/mvc/upload/upload-ftp.js M static/scripts/mvc/upload/upload-model.js M static/scripts/mvc/upload/upload-settings.js M static/scripts/mvc/upload/upload-view.js M static/scripts/mvc/user/user-custom-builds.js M static/scripts/mvc/user/user-model.js M static/scripts/mvc/user/user-preferences.js M static/scripts/mvc/user/user-quotameter.js M static/scripts/mvc/visualization/visualization-model.js M static/scripts/mvc/webhooks.js M static/scripts/mvc/workflow/workflow-canvas.js M static/scripts/mvc/workflow/workflow-connector.js M static/scripts/mvc/workflow/workflow-forms.js M static/scripts/mvc/workflow/workflow-icons.js M static/scripts/mvc/workflow/workflow-manager.js M static/scripts/mvc/workflow/workflow-model.js M static/scripts/mvc/workflow/workflow-node.js M static/scripts/mvc/workflow/workflow-terminals.js M static/scripts/mvc/workflow/workflow-view-data.js M static/scripts/mvc/workflow/workflow-view-node.js M static/scripts/mvc/workflow/workflow-view-terminals.js M static/scripts/mvc/workflow/workflow-view.js M static/scripts/mvc/workflow/workflow.js M static/scripts/nls/de/locale.js M static/scripts/nls/es/locale.js M static/scripts/nls/fr/locale.js M static/scripts/nls/ja/locale.js M static/scripts/nls/locale.js M static/scripts/nls/zh/locale.js M static/scripts/onload.js M static/scripts/polyfills.js M static/scripts/reports/run_stats.js M static/scripts/toolshed/groups/group-detail-view.js M static/scripts/toolshed/groups/group-list-view.js M static/scripts/toolshed/groups/group-listrow-view.js M static/scripts/toolshed/groups/group-model.js M static/scripts/toolshed/toolshed.groups.js M static/scripts/ui/autocom_tagging.js M static/scripts/ui/editable-text.js M static/scripts/ui/fa-icon-button.js M static/scripts/ui/filter-control.js M static/scripts/ui/hoverhighlight.js M static/scripts/ui/loading-indicator.js M static/scripts/ui/mode-button.js M static/scripts/ui/pagination.js M static/scripts/ui/peek-column-selector.js M static/scripts/ui/popupmenu.js M static/scripts/ui/scroll-panel.js M static/scripts/ui/search-input.js M static/scripts/utils/add-logging.js M static/scripts/utils/ajax-queue.js M static/scripts/utils/async-save-text.js M static/scripts/utils/config.js M static/scripts/utils/deferred.js M static/scripts/utils/graph.js M static/scripts/utils/levenshtein.js M static/scripts/utils/localization.js M static/scripts/utils/metrics-logger.js M static/scripts/utils/natural-sort.js M static/scripts/utils/query-string-parsing.js M static/scripts/utils/uploadbox.js M static/scripts/utils/utils.js M static/scripts/viz/bbi-data-manager.js M static/scripts/viz/circster.js M static/scripts/viz/phyloviz.js M static/scripts/viz/sweepster.js M static/scripts/viz/trackster.js M static/scripts/viz/trackster/filters.js M static/scripts/viz/trackster/painters.js M static/scripts/viz/trackster/slotting.js M static/scripts/viz/trackster/tracks.js M static/scripts/viz/trackster/util.js M static/scripts/viz/visualization.js M static/scripts/viz/viz_views.js M static/style/blue/base.css Log Message: ----------- Merge pull request #5395 from martenson/production-1801 [18.01] Build production client Commit: 04e4da0d31a2097d5db44a0ddbc3d7d9078d2474 https://github.com/galaxyproject/galaxy/commit/04e4da0d31a2097d5db44a0ddbc3d... Author: Nate Coraor <nate@bx.psu.edu> Date: 2018-02-07 (Wed, 07 Feb 2018) Changed paths: M lib/galaxy/tools/deps/__init__.py Log Message: ----------- Revert "Avoid duplicate dependency installation" This reverts commit c0cf41a15ccf7f9060c4dd891ff4b16814f7ecbc. Commit: 11ec4ee93d1f15ca69dfbf6e8a48132a64717730 https://github.com/galaxyproject/galaxy/commit/11ec4ee93d1f15ca69dfbf6e8a481... Author: Nate Coraor <nate@bx.psu.edu> Date: 2018-02-07 (Wed, 07 Feb 2018) Changed paths: M lib/galaxy/tools/deps/__init__.py M lib/galaxy/tools/deps/views.py Log Message: ----------- Revert "Try next dep. resolver if building env failed" This reverts commit e821d469e60959614147bde59163d75681bae266. Commit: 62540a97472ead80273e10cd54568b5184595307 https://github.com/galaxyproject/galaxy/commit/62540a97472ead80273e10cd54568... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-07 (Wed, 07 Feb 2018) Changed paths: M lib/galaxy/tools/deps/__init__.py M lib/galaxy/tools/deps/views.py Log Message: ----------- Merge pull request #5470 from natefoo/revert-5036 [18.01] Revert #5036 Commit: 65e2e0b48f59948a7df46f1d3440ffd127757be3 https://github.com/galaxyproject/galaxy/commit/65e2e0b48f59948a7df46f1d3440f... Author: Nate Coraor <nate@bx.psu.edu> Date: 2018-02-07 (Wed, 07 Feb 2018) Changed paths: M lib/galaxy/tools/deps/__init__.py M lib/galaxy/tools/deps/views.py M lib/galaxy/tools/parser/xml.py M static/style/blue/base.css Log Message: ----------- Merge remote-tracking branch 'origin/release_18.01' into dev Compare: https://github.com/galaxyproject/galaxy/compare/12f72412abe1...65e2e0b48f59