1 new commit in galaxy-central:

https://bitbucket.org/galaxy/galaxy-central/changeset/1cb2fdf2c7cf/ changeset: 1cb2fdf2c7cf user: greg date: 2012-08-07 20:42:28 summary: Ensure repository metadata records are unique in the tool shed. affected #: 1 file

diff -r ca835611e8c79a9b95c50acc28d670f7f81266e7 -r 1cb2fdf2c7cf22d74ec46e6877609f7056372d7c lib/galaxy/webapps/community/controllers/common.py --- a/lib/galaxy/webapps/community/controllers/common.py +++ b/lib/galaxy/webapps/community/controllers/common.py @@ -238,10 +238,17 @@ reset_tool_data_tables( trans.app ) return can_set_metadata, invalid_files def clean_repository_metadata( trans, id, changeset_revisions ): - # Delete all repository_metadata reecords associated with the repository that have a changeset_revision that is not in changeset_revisions. + # Delete all repository_metadata records associated with the repository that have a changeset_revision that is not in changeset_revisions. + # We sometimes see multiple records with the same changeset revision value - no idea how this happens. We'll assume we can delete the older + # records, so we'll order by update_time descending and delete records that have the same changeset_revision we come across later.. + changeset_revisions_checked = [] for repository_metadata in trans.sa_session.query( trans.model.RepositoryMetadata ) \ - .filter( trans.model.RepositoryMetadata.table.c.repository_id == trans.security.decode_id( id ) ): - if repository_metadata.changeset_revision not in changeset_revisions: + .filter( trans.model.RepositoryMetadata.table.c.repository_id == trans.security.decode_id( id ) ) \ + .order_by( trans.model.RepositoryMetadata.table.c.changeset_revision, + trans.model.RepositoryMetadata.table.c.update_time.desc() ): + changeset_revision = repository_metadata.changeset_revision + can_delete = changeset_revision in changeset_revisions_checked or changeset_revision not in changeset_revisions + if can_delete: trans.sa_session.delete( repository_metadata ) trans.sa_session.flush() def compare_changeset_revisions( ancestor_changeset_revision, ancestor_metadata_dict, current_changeset_revision, current_metadata_dict ): @@ -874,9 +881,8 @@ if 'workflows' in metadata_dict: repository_metadata = get_latest_repository_metadata( trans, repository.id ) if repository_metadata: - if repository_metadata.metadata: - # The repository has metadata, so update the workflows value - no new record is needed. - return False + # The repository has metadata, so update the workflows value - no new record is needed. + return False else: # There is no saved repository metadata, so we need to create a new repository_metadata table record. return True

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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