Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 1342c2bd706b353038871a73992ae1a19878a694 https://github.com/galaxyproject/galaxy/commit/1342c2bd706b353038871a73992ae... Author: Nuwan Goonasekera nuwan.ag@gmail.com Date: 2017-08-19 (Sat, 19 Aug 2017)

Changed paths: M client/galaxy/scripts/mvc/form/form-parameters.js A client/galaxy/scripts/mvc/tool/tool-genomespace.js A client/galaxy/scripts/mvc/ui/ui-select-genomespace.js M client/galaxy/style/less/ui.less M config/tool_conf.xml.main M config/tool_conf.xml.sample M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/tools/parameters/basic.py M lib/galaxy/web/form_builder.py M tools/genomespace/genomespace_exporter.py M tools/genomespace/genomespace_exporter.xml M tools/genomespace/genomespace_file_browser.py R tools/genomespace/genomespace_file_browser_dev.xml R tools/genomespace/genomespace_file_browser_prod.xml R tools/genomespace/genomespace_file_browser_test.xml M tools/genomespace/genomespace_importer.py M tools/genomespace/genomespace_importer.xml

Log Message: ----------- Integrated File Browsing and Workflow support for GenomeSpace

Commit: e39901ef0695d6e7828d81ce3d1a9a230fda1569 https://github.com/galaxyproject/galaxy/commit/e39901ef0695d6e7828d81ce3d1a9... Author: Nuwan Goonasekera nuwan.ag@gmail.com Date: 2017-08-19 (Sat, 19 Aug 2017)

Changed paths: M client/galaxy/style/less/ui.less M lib/galaxy/dependencies/pinned-requirements.txt M tools/genomespace/genomespace_exporter.py M tools/genomespace/genomespace_exporter.xml M tools/genomespace/genomespace_importer.py M tools/genomespace/genomespace_importer.xml

Log Message: ----------- Moved back some code to wrapper and added back data type sniffing.

Commit: ad1b61344557b53af10fae91011ec4a7be5d4a67 https://github.com/galaxyproject/galaxy/commit/ad1b61344557b53af10fae91011ec... Author: Nuwan Goonasekera nuwan.ag@gmail.com Date: 2017-08-19 (Sat, 19 Aug 2017)

Changed paths: M config/tool_conf.xml.main M config/tool_conf.xml.sample M tools/genomespace/genomespace_importer.py M tools/genomespace/genomespace_importer.xml A tools/genomespace/genomespace_push.xml

Log Message: ----------- Added support for pushing multiple files from GenomeSpace to Galaxy.

Commit: b04ccbe55b33ffca1aa09668885bceea61951dfe https://github.com/galaxyproject/galaxy/commit/b04ccbe55b33ffca1aa09668885bc... Author: slugger70 slugger70@gmail.com Date: 2017-08-19 (Sat, 19 Aug 2017)

Changed paths: M tools/genomespace/genomespace_importer.xml

Log Message: ----------- Fixed genomespace_importer.xml command block

Commit: cb1b086324b1625d4f5ac0087e00971f3048afd4 https://github.com/galaxyproject/galaxy/commit/cb1b086324b1625d4f5ac0087e009... Author: Nuwan Goonasekera nuwan.ag@gmail.com Date: 2017-08-19 (Sat, 19 Aug 2017)

Changed paths: M lib/galaxy/tools/parameters/basic.py M tools/genomespace/genomespace_exporter.py M tools/genomespace/genomespace_importer.py

Log Message: ----------- Fixed pylint errors

Commit: 46c04dcbd4eb47a2f3a2ff559c9ba4e280621750 https://github.com/galaxyproject/galaxy/commit/46c04dcbd4eb47a2f3a2ff559c9ba... Author: Nuwan Goonasekera nuwan.ag@gmail.com Date: 2017-08-19 (Sat, 19 Aug 2017)

Changed paths: M tools/genomespace/genomespace_importer.py

Log Message: ----------- Fix incorrect reference when determining file type through file ext

Commit: 678d575a7ae2cf7056564b525971396dc16d9b39 https://github.com/galaxyproject/galaxy/commit/678d575a7ae2cf7056564b5259713... Author: Nuwan Goonasekera nuwan.ag@gmail.com Date: 2017-08-19 (Sat, 19 Aug 2017)

Changed paths: M tools/genomespace/genomespace_importer.py

Log Message: ----------- Improved recognition of compressed files

Commit: ae6ae8ffe2c1558513737b5fab77840a22cea0a8 https://github.com/galaxyproject/galaxy/commit/ae6ae8ffe2c1558513737b5fab778... Author: Nuwan Goonasekera nuwan.ag@gmail.com Date: 2017-08-19 (Sat, 19 Aug 2017)

Changed paths: M client/galaxy/scripts/mvc/tool/tool-genomespace.js M config/galaxy.ini.sample M lib/galaxy/config.py M lib/galaxy/managers/configuration.py

Log Message: ----------- Added new config setting for GenomeSpace UI URL

Commit: 517fd23fc8cd84c5277ccadc33222fa913230cc8 https://github.com/galaxyproject/galaxy/commit/517fd23fc8cd84c5277ccadc33222... Author: Nuwan Goonasekera nuwan.ag@gmail.com Date: 2017-08-19 (Sat, 19 Aug 2017)

Changed paths: M tools/genomespace/genomespace_exporter.xml

Log Message: ----------- Fixed typo in exporter help text

Commit: b73e21b584dc13716460f550ed80108634adca37 https://github.com/galaxyproject/galaxy/commit/b73e21b584dc13716460f550ed801... Author: Nuwan Goonasekera nuwan.ag@gmail.com Date: 2017-08-19 (Sat, 19 Aug 2017)

Changed paths: M lib/galaxy/tools/parameters/basic.py M lib/galaxy/web/form_builder.py M tools/genomespace/genomespace_importer.py

Log Message: ----------- Formatting and linting fixes for GenomeSpace tool

Commit: b995e551d408bd192322de530db89ddd08d35db2 https://github.com/galaxyproject/galaxy/commit/b995e551d408bd192322de530db89... Author: Nuwan Goonasekera nuwan.ag@gmail.com Date: 2017-08-19 (Sat, 19 Aug 2017)

Changed paths: M client/galaxy/scripts/mvc/ui/ui-select-genomespace.js M client/galaxy/style/less/ui.less

Log Message: ----------- Fixed alignment of buttons in Genomespace Importer

Commit: 46dc4a252cf6144672053864b16e52a85c810e34 https://github.com/galaxyproject/galaxy/commit/46dc4a252cf6144672053864b16e5... Author: Nuwan Goonasekera nuwan.ag@gmail.com Date: 2017-08-19 (Sat, 19 Aug 2017)

Changed paths: M tools/genomespace/genomespace_exporter.xml M tools/genomespace/genomespace_importer.xml M tools/genomespace/genomespace_push.xml

Log Message: ----------- Fixed template formatting according to review comments

Commit: 3e8bf3c4e72ca035f98142b3dc153de0a8e9d6a1 https://github.com/galaxyproject/galaxy/commit/3e8bf3c4e72ca035f98142b3dc153... Author: Nuwan Goonasekera nuwan.ag@gmail.com Date: 2017-08-19 (Sat, 19 Aug 2017)

Changed paths: M tools/genomespace/genomespace_exporter.py M tools/genomespace/genomespace_exporter.xml M tools/genomespace/genomespace_importer.py M tools/genomespace/genomespace_push.xml

Log Message: ----------- Moved genomespace token to environment variable

Commit: 52b26f45a2bd3bcb0155553bf6e3e765d3bd4b2c https://github.com/galaxyproject/galaxy/commit/52b26f45a2bd3bcb0155553bf6e3e... Author: Nuwan Goonasekera nuwan.ag@gmail.com Date: 2017-08-19 (Sat, 19 Aug 2017)

Changed paths: M lib/galaxy/tools/__init__.py M tools/genomespace/genomespace_importer.xml

Log Message: ----------- Registered genomespace_importer as a tool needing Galaxy's python env

Commit: 32401978234c46aeef80bc0ee144a478820468dc https://github.com/galaxyproject/galaxy/commit/32401978234c46aeef80bc0ee144a... Author: Nuwan Goonasekera nuwan.ag@gmail.com Date: 2017-08-19 (Sat, 19 Aug 2017)

Changed paths: M static/maps/mvc/form/form-parameters.js.map A static/maps/mvc/tool/tool-genomespace.js.map A static/maps/mvc/ui/ui-select-genomespace.js.map M static/scripts/bundled/admin.bundled.js M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/form/form-parameters.js A static/scripts/mvc/tool/tool-genomespace.js A static/scripts/mvc/ui/ui-select-genomespace.js M static/style/blue/base.css

Log Message: ----------- Rebuilt galaxy client files

Commit: fd51a61d014c4d3affe146b69fc3ed097037d2a1 https://github.com/galaxyproject/galaxy/commit/fd51a61d014c4d3affe146b69fc3e... Author: Martin Cech marten@bx.psu.edu Date: 2017-08-18 (Fri, 18 Aug 2017)

Changed paths: M client/galaxy/scripts/mvc/form/form-parameters.js A client/galaxy/scripts/mvc/tool/tool-genomespace.js A client/galaxy/scripts/mvc/ui/ui-select-genomespace.js M client/galaxy/style/less/ui.less M config/galaxy.ini.sample M config/tool_conf.xml.main M config/tool_conf.xml.sample M lib/galaxy/config.py M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/managers/configuration.py M lib/galaxy/tools/__init__.py M lib/galaxy/tools/parameters/basic.py M lib/galaxy/web/form_builder.py M static/maps/mvc/form/form-parameters.js.map A static/maps/mvc/tool/tool-genomespace.js.map A static/maps/mvc/ui/ui-select-genomespace.js.map M static/scripts/bundled/admin.bundled.js M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/form/form-parameters.js A static/scripts/mvc/tool/tool-genomespace.js A static/scripts/mvc/ui/ui-select-genomespace.js M static/style/blue/base.css M tools/genomespace/genomespace_exporter.py M tools/genomespace/genomespace_exporter.xml M tools/genomespace/genomespace_file_browser.py R tools/genomespace/genomespace_file_browser_dev.xml R tools/genomespace/genomespace_file_browser_prod.xml R tools/genomespace/genomespace_file_browser_test.xml M tools/genomespace/genomespace_importer.py M tools/genomespace/genomespace_importer.xml A tools/genomespace/genomespace_push.xml

Log Message: ----------- Merge pull request #1814 from gvlproject/genomespace_workflows

Galaxy Workflow support for GenomeSpace

Compare: https://github.com/galaxyproject/galaxy/compare/263018326895...fd51a61d014c