1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/6010fcf5e677/ changeset: 6010fcf5e677 user: dan date: 2011-10-25 20:21:49 summary: Remove some debug prints from GATK unified genotyper. affected #: 1 file diff -r b0967259b2905e58bc0e75ba8ada7a0cd8974b7d -r 6010fcf5e6773a4f06b148420bf046d3d8a22b4d tools/gatk/unified_genotyper.xml --- a/tools/gatk/unified_genotyper.xml +++ b/tools/gatk/unified_genotyper.xml @@ -7,8 +7,6 @@ --max_jvm_heap_fraction "1" --stdout "${output_log}" #for $i, $input_bam in enumerate( $reference_source.input_bams ): - ${dir( $input_bam.input_bam )} - ${dir( $input_bam.input_bam.dataset )} -d "-I" "${input_bam.input_bam}" "${input_bam.input_bam.ext}" "gatk_input_${i}" -d "" "${input_bam.input_bam.metadata.bam_index}" "bam_index" "gatk_input_${i}" ##hardcode galaxy ext type as bam_index #end for Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.