commit/galaxy-central: inithello: Remove tool that was migrated to the tool shed in 10719:c2f06b5cfba1. Remove test data that belonged to tools that were removed in 12288:401ee23dcf2f.
1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/f68bd3660813/ Changeset: f68bd3660813 User: inithello Date: 2014-02-17 19:05:00 Summary: Remove tool that was migrated to the tool shed in 10719:c2f06b5cfba1. Remove test data that belonged to tools that were removed in 12288:401ee23dcf2f. Affected #: 34 files diff -r 40b9b13ec62b43d83e96d6624edbaea967da82a6 -r f68bd3660813e4d5024a71d84a8a8c0a24ae892a test-data/branchlength_in.fasta --- a/test-data/branchlength_in.fasta +++ /dev/null @@ -1,44 +0,0 @@ ->hg17.chr7(+):26907301-26907310|hg17_0 -GTGGGAGGT ->panTro1.chr6(+):28037319-28037328|panTro1_0 -GTGGGAGGT ->mm5.chr6(+):52104022-52104031|mm5_0 -GTGGGAGGT ->rn3.chr4(+):80734395-80734404|rn3_0 -GTGGGAGGT ->canFam1.chr14(+):42826409-42826418|canFam1_0 -GTGGGAGGT - ->hg17.chr7(+):26907310-26907326|hg17_1 -AGTCAGAGTGTCTGAG ->panTro1.chr6(+):28037328-28037344|panTro1_1 -AGTCAGAGTGTCTGAG ->mm5.chr6(+):52104031-52104047|mm5_1 -AGTCAGAGTGTCTGAG ->rn3.chr4(+):80734404-80734420|rn3_1 -AGTCAGAGTATCTGAG ->canFam1.chr14(+):42826418-42826434|canFam1_1 -AGTCAGAGTGTCTGAG - ->hg17.chr7(+):26907326-26907338|hg17_2 -GTAGAAGACCCC ->panTro1.chr6(+):28037344-28037356|panTro1_2 -GTAGAAGACCCC ->mm5.chr6(+):52104047-52104059|mm5_2 -GTAGACGATGCC ->rn3.chr4(+):80734420-80734432|rn3_2 -GTAGATGATGCG ->canFam1.chr14(+):42826434-42826446|canFam1_2 -GTAGAAGACCCC - ->hg17.chr7(+):26907338-26907654|hg17_3 -GGGGAAGGAACGCAGGGCGAAGAGCTGGACTTCTCTGAGGAT---TCCTCGGCCTTCTCGT-----CGTTTCCTGG----CGGGGTGGCCGGAGAGATGGGCAAGAGACCCTCCTTCTCACGTTTCTTTTGCTTCATTCGGCGGTTCTGGAACCAGATCTTCACTTGGGTCTCGTTGAGCTGCAGGGATGCAGCGATCTCCACCCTGCGGGCGCGCGTCAGGTACTTGTTGAAGTGGAACTCCTTCTCCAGTTCCGTGAGCTGCTTGGTAGTGAAGTTGGTGCGCACCGCGTTGGGTTGACCCAGGTAGCCGTACTCTCCAACTTTCC ->panTro1.chr6(+):28037356-28037672|panTro1_3 -GGGGAAGGAACGCAGGGCGAAGAGCTGGACTTCTCTGAGGAT---TCCTCGGCCTTCTCGT-----CGTTTCCTGG----CGGGGTGGCCGGAGAGATGGGCAAGAGACCCTCCTTCTCACGTTTCTTTTGCTTCATTCGGCGGTTCTGGAACCAGATCTTCACTTGGGTCTCGTTGAGCTGCAGGGATGCAGCGATCTCCACCCTGCGGGCGCGCGTCAGGTACTTGTTGAAGTGGAACTCCTTCTCCAGTTCCGTGAGCTGCTTGGTAGTGAAGTTGGTGCGCACCGCGTTGGGTTGACCCAGGTAGCCGTACTCTCCAACTTTCC ->mm5.chr6(+):52104059-52104375|mm5_3 -GGAGAAGGGGCACTGGGCGAGGGGCTAGATTTCTCAGATGAT---TCTTCCGTTTTCTCAT-----CGCTGCCAGG----AGGAGTGGCAGGGGAGATGGGCAGGAGCCCCTCCTTCTCACGCTTCTTCTGCTTCATGCGGCGATTCTGGAACCAGATCTTCACCTGGGTCTCATTGAGCTGTAGGGACGCGGCAATCTCCACCCTGCGCGCTCGTGTAAGGTACTTGTTGAAGTGGAACTCCTTCTCCAGCTCTGTGAGCTGCTTGGTGGTGAAATTGGTGCGCACTGCGTTGGGTTGACCCACGTAGCCGTACTCTCCAACTTTCC ->rn3.chr4(+):80734432-80734748|rn3_3 -GGAGAAGGGGCGCTGGGCGAGGAGCTGGATTTCTCAGATGAT---TCTTCAGTTTTCTCAT-----CGCTTCCAGG----AGGGGTGGCGGGTGAAATGGGCAAGAGCCCCTCTTTCTCGCGCTTCTTCTGCTTCATGCGGCGATTCTGGAACCAGATCTTCACCTGGGTCTCATTGAGTTGCAGGGACGCGGCTATCTCCACCCTGCGGGCTCTTGTTAGGTACTTGTTGAAGTGGAACTCCTTCTCCAGCTCTGTGAGCTGCTTGGTGGTGAAGTTGGTGCGCACTGCGTTGGGTTGACCCACGTAGCCATACTCTCCAACTTTCC ->canFam1.chr14(+):42826446-42826762|canFam1_3 -GGAGACGGAATGCAGGGCGAGGAGCTGGATTTCTCTGAAGAT---TCCTCCGCCTTCTCCT-----CACTTCCTGG----CGGGGTGGCAGGGGAGATGGGCAAAAGGCCCTCTTTCTCTCGTTTCTTCTGCTTCATCCGGCGGTTCTGGAACCAGATCTTCACCTGGGTCTCGTTGAGCTGCAGGGATGCTGCGATCTCCACCCTGCGGGCGCGGGTCAGATACTTATTGAAGTGGAACTCCTTTTCCAGCTCGGTGAGCTGCTTGGTGGTGAAGTTGGTACGCACTGCATTCGGTTGACCCACGTAGCCGTACTCTCCAACTTTCC - diff -r 40b9b13ec62b43d83e96d6624edbaea967da82a6 -r f68bd3660813e4d5024a71d84a8a8c0a24ae892a test-data/branchlength_out.tabular --- a/test-data/branchlength_out.tabular +++ /dev/null @@ -1,33 +0,0 @@ -Block Branch Length LowerBound UpperBound -1 hg17.chr7(+):26907301-26907310|hg17_0 0 0 0.235398 -1 panTro1.chr6(+):28037319-28037328|panTro1_0 0 0 0.235398 -1 Node1 0 0 0.235398 -1 mm5.chr6(+):52104022-52104031|mm5_0 0 0 0.235398 -1 rn3.chr4(+):80734395-80734404|rn3_0 0 0 0.235398 -1 Node4 0 0 0.235398 -1 canFam1.chr14(+):42826409-42826418|canFam1_0 0 0 0.235398 -1 Total Tree 0 0 0 -2 hg17.chr7(+):26907310-26907326|hg17_1 0 0 0.13592 -2 panTro1.chr6(+):28037328-28037344|panTro1_1 0 0 0.13592 -2 Node1 0 0 0.13592 -2 mm5.chr6(+):52104031-52104047|mm5_1 0 0 0.13592 -2 rn3.chr4(+):80734404-80734420|rn3_1 0.069102 0.00372954 0.421886 -2 Node4 0 0 0.13592 -2 canFam1.chr14(+):42826418-42826434|canFam1_1 0 0 0.13592 -2 Total Tree 0.069102 0.00372954 0.421893 -3 hg17.chr7(+):26907326-26907338|hg17_2 0 0 0.167602 -3 panTro1.chr6(+):28037344-28037356|panTro1_2 0 0 0.167602 -3 Node1 0 0 0.167602 -3 mm5.chr6(+):52104047-52104059|mm5_2 0 0 0.250304 -3 rn3.chr4(+):80734420-80734432|rn3_2 0.198834 0.0311152 0.746578 -3 Node4 0.3077 0.0691968 1.10319 -3 canFam1.chr14(+):42826434-42826446|canFam1_2 0 0 0.167602 -3 Total Tree 0.506533 0.169204 1.27895 -4 hg17.chr7(+):26907338-26907654|hg17_3 0 0 0.0061265 -4 panTro1.chr6(+):28037356-28037672|panTro1_3 0 0 0.0061265 -4 Node1 0.058307 0.0318704 0.0951274 -4 mm5.chr6(+):52104059-52104375|mm5_3 0.0357629 0.0167852 0.0644078 -4 rn3.chr4(+):80734432-80734748|rn3_3 0.0320295 0.0141343 0.0594854 -4 Node4 0.0770194 0.0463495 0.118484 -4 canFam1.chr14(+):42826446-42826762|canFam1_3 0.0575357 0.0316289 0.0936537 -4 Total Tree 0.260654 0.205256 0.325686 diff -r 40b9b13ec62b43d83e96d6624edbaea967da82a6 -r f68bd3660813e4d5024a71d84a8a8c0a24ae892a test-data/column_join_in1.pileup --- a/test-data/column_join_in1.pileup +++ /dev/null @@ -1,30 +0,0 @@ -chrM 1 A G 25 0 25 1 ^:. I -chrM 2 C T 25 0 25 2 .N I$ -chrM 3 T G 27 0 25 2 .. II -chrM 4 G C 36 0 25 3 .^:.^:. II+ -chrM 5 T A 38 0 25 3 ... III -chrM 6 T A 39 0 25 4 .N.. I$II -chrM 7 G C 43 0 25 5 ...^:.^:. IIIII -chrM 8 A C 46 0 25 6 .....^:. IIIIII -chrM 9 T G 53 0 25 8 ..G...^:.^:. IIIII$II -chrM 10 T G 56 0 25 9 ........^:. IIIIIIIII -chrM 11 C G 57 0 25 10 .........^:. IIIIIIIIII -chrM 12 T C 61 0 25 11 ..........^:. IIIIIIIIIII -chrM 13 T G 79 0 25 15 .........^:.^:.^:.^:.^:.^:. IIIIIIIIIIII#II -chrM 14 A C 58 0 25 18 .......G.........^:. BIIIIIII+IIIIIIIII -chrM 15 G A 87 0 25 19 ..N...............^:.^:. DIIIIII$(IIIIIIIIIII -chrM 16 G C 88 0 25 20 .........N.......... IIIIIIIIIIIIIIIIIIII -chrM 17 A C 88 0 25 20 .........G.......... 9IIIIIIIIIIIIIIIIIII -chrM 18 G A 89 0 25 20 ...A................ @IIIIIIIIIIIIIIIIIII -chrM 19 G T 58 0 25 20 ....T.............GG IIIIIIIIIIIIIIIIII'A -chrM 20 T C 55 0 25 20 .........C........C. IIIIIIIIIIIIIII2II#$ -chrM 21 C T 87 0 25 20 ..........G......... IIIIIIIIIIIIIIIIIIII -chrM 22 C A 87 0 25 20 ..........N......... IIIIIIIIIIIIIIAIIIII -chrM 23 A G 87 0 25 20 .....T.............. 9IIIIIIIIII0IIIIIIII -chrM 24 A T 89 0 25 20 .....N..N........... III$IIII"IIIIICII#II -chrM 25 G A 57 0 25 21 ...A................^:. A@.$IIIIIIIFIIIIIIIII -chrM 26 C G 58 0 25 22 ...N....A............. IIHIDII&IIIIII@IIIIII -chrM 27 T A 99 0 25 23 ....................^:.^:.^:. IE8IFIII9IIIIIIIIIIIIII -chrM 28 A C 99 0 25 24 ..G..................... 1FIIIIIIIIIIIIIIIIDEIIII -chrM 29 G C 58 0 25 25 ........C.........NN.... ;IIIIII+HII=III$III""IIII -chrM 30 T T 65 0 25 25 ...C....................^:. ;I?&IAI0IIIIIIIIIIIIIIIII diff -r 40b9b13ec62b43d83e96d6624edbaea967da82a6 -r f68bd3660813e4d5024a71d84a8a8c0a24ae892a test-data/column_join_in10.pileup --- a/test-data/column_join_in10.pileup +++ /dev/null @@ -1,26 +0,0 @@ -0610009D07Rik 2 1.41 1.41 -0.24 12/12 2 1 -1110002N22Rik 2 1.70 1.70 -0.06 10/12 2 1 -1110008L16Rik 3 1.73 1.73 -0.54 12/12 2 1 -1110054O05Rik 1 1.55 1.55 1.14 5/12 1 1 -Actg1 2 4.24 4.24 2.36 4/12 2 1 -Actl6a 2 1.55 1.55 1.00 10/12 1 1 -Actn1 1 3.46 3.46 3.17 1/12 1 1 -Actn4 1 3.46 3.46 3.17 1/12 1 1 -Bnc2 1 2.00 2.00 1.67 3/12 1 1 -Bub3 2 1.89 1.89 1.02 9/12 2 1 -Cad 4 4.90 4.90 3.09 2/12 1 1 -Calm1;Calm3;Calm2 2 2.83 2.83 2.57 3/12 1 1 -E130012A19Rik 2 5.66 5.66 1.50 3/12 2 1 -E2f6 2 3.39 3.39 1.80 5/12 2 1 -Gm12620 1 3.46 3.46 3.17 1/12 1 1 -Gm13092;LOC677017 1 1.15 1.15 0.29 9/12 1 1 -Gm14173;Rpl37a;Gm4149 1 3.00 3.00 1.37 4/12 2 1 -Gm14393;2210418O10Rik;Gm14296;Gm14401;RP23-330D3.5 1 3.46 3.46 3.17 1/12 1 1 -Gm189 1 1.20 1.20 0.16 10/12 2 1 -Sfrs7 1 1.71 1.71 0.18 7/12 2 1 -Sin3a 1 1.71 1.71 -0.12 7/12 2 1 -Ski 1 2.45 2.45 2.13 2/12 1 1 -Skil 1 2.00 2.00 1.03 3/12 1 1 -Tubb2c 1 2.00 2.00 1.67 3/12 1 1 -Tubb2c-ps1 1 12.00 12.00 3.17 1/12 2 1 -Zscan4f 2 1.70 1.70 1.00 10/12 2 1 diff -r 40b9b13ec62b43d83e96d6624edbaea967da82a6 -r f68bd3660813e4d5024a71d84a8a8c0a24ae892a test-data/column_join_in11.pileup --- a/test-data/column_join_in11.pileup +++ /dev/null @@ -1,36 +0,0 @@ -0610009D07Rik 3 1.73 1.73 1.15 12/12 2 1 -0610010K14Rik 1 1.41 1.41 0.96 6/12 1 1 -1110002N22Rik 3 2.08 2.08 0.74 10/12 2 1 -1110008L16Rik 1 1.00 1.00 -1.35 12/12 1 1 -Acta1 2 1.54 1.54 0.63 11/12 2 1 -Actb 1 1.33 1.33 0.00 9/12 2 1 -Actg1 1 3.00 3.00 0.87 4/12 2 1 -Actl6a 1 1.10 1.10 -0.33 10/12 1 1 -Actl6b 1 2.45 2.45 2.13 2/12 1 1 -Bnc2 1 2.00 2.00 1.67 3/12 1 1 -Bptf 1 3.46 3.46 3.17 1/12 1 1 -Brip1 1 1.22 1.22 -0.19 8/12 1 1 -Brms1l 1 12.00 12.00 3.17 1/12 2 1 -Btf3;Gm3531 1 2.00 2.00 1.67 3/12 1 1 -Bub3 3 2.00 2.00 2.13 9/12 1 1 -C330007P06Rik 1 2.45 2.45 2.13 2/12 1 1 -Cad 1 2.45 2.45 0.50 2/12 1 1 -Calm1;Calm3;Calm2 1 2.00 2.00 1.03 3/12 1 1 -Cbx1 2 3.39 3.39 2.24 5/12 2 1 -E2f6 1 2.40 2.40 0.53 5/12 2 1 -Eed 1 1.20 1.20 -0.47 10/12 2 1 -Gm10079 2 1.41 1.41 0.16 12/12 1 1 -Gm11230 2 1.48 1.48 1.21 11/12 1 1 -Gm13072;Trmt112 1 3.46 3.46 3.17 1/12 1 1 -Gm13092;LOC677017 1 1.33 1.33 0.29 9/12 2 1 -Gm14231 1 1.31 1.31 0.51 7/12 1 1 -Gm14456;Tpt1 1 2.00 2.00 1.67 3/12 1 1 -Gm15501;Rps8 1 1.55 1.55 1.14 5/12 1 1 -Gm189 1 1.20 1.20 0.16 10/12 2 1 -Sfrs11 3 1.73 1.73 1.15 12/12 2 1 -Sin3a 4 3.43 3.43 1.93 7/12 2 1 -Sirt7 1 2.00 2.00 1.67 3/12 1 1 -Skiv2l2 12 3.46 3.46 -0.72 12/12 2 1 -Tubb2b 4 2.00 2.00 0.49 12/12 2 1 -Zscan4e 1 1.41 1.41 0.63 6/12 1 1 -Zscan4f 2 1.70 1.70 1.00 10/12 2 1 diff -r 40b9b13ec62b43d83e96d6624edbaea967da82a6 -r f68bd3660813e4d5024a71d84a8a8c0a24ae892a test-data/column_join_in12.pileup --- a/test-data/column_join_in12.pileup +++ /dev/null @@ -1,36 +0,0 @@ -0610009D07Rik 4 2.00 2.00 2.54 12/12 2 1 -0610010K14Rik 1 1.41 1.41 0.96 6/12 1 1 -1110002N22Rik 2 1.70 1.70 -0.06 10/12 2 1 -1110008L16Rik 6 2.45 2.45 0.68 12/12 2 1 -1110037F02Rik 1 2.45 2.45 2.13 2/12 1 1 -1190005F20Rik 4 2.18 2.18 0.28 11/12 2 1 -Acot8 1 2.00 2.00 0.07 6/12 2 1 -Acta1 2 1.54 1.54 0.63 11/12 2 1 -Actb 2 1.89 1.89 1.35 9/12 2 1 -Actl6b 1 6.00 6.00 2.13 2/12 2 1 -Bend3 1 1.15 1.33 -0.51 9/12 1 1.33 -Bend5 1 3.46 3.46 3.17 1/12 1 1 -Brip1 2 1.73 1.73 0.58 8/12 1 1 -Btf3;Gm3531 1 4.00 4.00 1.67 3/12 2 1 -Bub3 1 1.33 1.33 -0.09 9/12 2 1 -C130039O16Rik 1 2.45 2.45 2.13 2/12 1 1 -C1d 1 1.73 1.73 0.87 4/12 1 1 -Caprin1 2 2.42 2.42 0.51 7/12 2 1 -Cbx3 2 1.54 1.54 0.75 11/12 2 1 -Eed 1 1.10 1.10 -0.47 10/12 1 1 -Efha1 1 3.46 3.46 3.17 1/12 1 1 -Exosc1 3 1.73 1.73 1.29 12/12 2 1 -Exosc10 25 5.00 5.00 1.03 12/12 2 1 -Gm189 2 1.70 1.70 2.12 10/12 2 1 -Gm3200 1 2.45 2.45 2.13 2/12 1 1 -Gm9855;Tdg 2 1.70 1.70 1.37 10/12 2 1 -Sfrs11 4 2.00 2.00 2.54 12/12 2 1 -Sfrs12 2 5.66 5.66 2.57 3/12 2 1 -Sin3a 1 1.31 1.31 -0.12 7/12 1 1 -Sirt7 1 2.00 2.00 1.67 3/12 1 1 -Skiv2l2 34 5.83 5.83 0.68 12/12 2 1 -Tubb2b 3 1.73 1.73 -0.10 12/12 2 1 -Tubb4 1 1.15 1.15 0.29 9/12 1 1 -Zscan4-ps2 1 12.00 12.00 3.17 1/12 2 1 -Zscan4e 2 2.83 2.83 2.12 6/12 2 1 -Zscan4f 2 1.70 1.70 1.00 10/12 2 1 diff -r 40b9b13ec62b43d83e96d6624edbaea967da82a6 -r f68bd3660813e4d5024a71d84a8a8c0a24ae892a test-data/column_join_in13.tabular --- a/test-data/column_join_in13.tabular +++ /dev/null @@ -1,6 +0,0 @@ -alpha beta gamma delta -1 A I a i -2 B II b ii -5 C III c -7 D IV d iii -11 E V e iv diff -r 40b9b13ec62b43d83e96d6624edbaea967da82a6 -r f68bd3660813e4d5024a71d84a8a8c0a24ae892a test-data/column_join_in14.tabular --- a/test-data/column_join_in14.tabular +++ /dev/null @@ -1,11 +0,0 @@ -alpha beta gamma delta epsilon -1 AA I2 aa i2 -2 BB II2 bb -3 CC III2 cc ii2 -4 DD IV2 dd iii2 -6 EE V2 ee iv2 -7 FF VI2 ff -8 GG VII2 gg v2 -9 HH VIII2 hh vi2 -10 II IX2 ii vii2 -11 JJ X2 jj viii2 diff -r 40b9b13ec62b43d83e96d6624edbaea967da82a6 -r f68bd3660813e4d5024a71d84a8a8c0a24ae892a test-data/column_join_in15.tabular --- a/test-data/column_join_in15.tabular +++ /dev/null @@ -1,11 +0,0 @@ -alpha beta gamma -2 BBB II3 bbb i3 -3 CCC III3 ccc ii3 -4 DDD IV2 ddd iii3 -5 EEE V3 eee -6 FFF VI3 fff iv3 -7 GGG VII3 ggg v3 -8 HHH VIII3 hhh -9 III IX3 iii vi3 -10 JJJ X3 jjj vii3 -11 LLL XI3 lll diff -r 40b9b13ec62b43d83e96d6624edbaea967da82a6 -r f68bd3660813e4d5024a71d84a8a8c0a24ae892a test-data/column_join_in2.pileup --- a/test-data/column_join_in2.pileup +++ /dev/null @@ -1,30 +0,0 @@ -chrM 1 T G 25 0 25 1 ^:. I -chrM 2 C A 25 0 25 1 . I -chrM 3 C A 25 0 25 2 .. I+ -chrM 4 G A 36 0 25 3 .^:.^:. II+ -chrM 5 A T 36 0 25 3 ... IDI -chrM 6 A G 36 0 25 4 ..T. IIBI -chrM 7 C G 42 0 25 5 ...^:.^:. ID@II -chrM 8 T T 45 0 25 6 .....^:. III$BI -chrM 9 C A 51 0 25 8 ......^:.^:. $#III+III -chrM 10 G G 54 0 25 9 ........^:. III$III#I -chrM 11 T C 57 0 25 10 .........^:. IIIDBIIIII -chrM 12 A T 60 0 25 11 ..........^:. IIIIIIIII$I -chrM 13 A T 78 0 25 18 ..A.........^:.^:.^:.^:.^:.^:. III#$IIIIII+IIDIIB -chrM 14 G A 56 0 25 19 ........T.........^:. BIIIIIII+IIII$IBIII -chrM 15 G A 87 0 25 20 ..................^:.^:. DIIIIIII(IIIIIIIIIII -chr1 1 T T 87 0 25 20 .............T...... IIIIIIIIIIII$DIIIIII -chr1 2 A T 87 0 25 20 ......G............. 9IIIIIIIIIIIIICBIIII -chr1 3 A G 87 0 25 20 ....A............... @IIIIIIIII#IIII#IIII -chr1 4 A T 55 0 25 20 ..................GG IIIII@II$IIIIIIIII'A -chr1 5 C A 54 0 25 20 .......A..........C. IIIIIIIIIDIIIII2II#$ -chr1 6 G T 87 0 25 20 .............A...... IIIIIIIBIIIIII#IIIII -chr1 7 A C 87 0 25 20 ..........C......... IIIII+IIIIIIIIAIIIII -chr1 8 G A 87 0 25 20 ....G.........T..... 9IIIIIIIIII0IIIIIIII -chr1 9 A T 87 0 25 20 ........N........... IIII$III"IIIIICIIIII -chr1 10 G A 57 0 25 21 ...A................^:. A@.$IIIIIIIFIIIIIIIII -chr1 11 C A 57 0 25 22 ....G...A............. IIHIDII&IIIIII#III$II -chr1 12 T A 99 0 25 24 .....................^:.^:.^:. IE8IFIII9IIIIIIIIIIIIIII -chr1 13 A C 99 0 25 25 ...N..................... 1FIIIIIIIIIIIIIIIIDEII$II -chr1 14 G C 55 0 25 25 ....G..............NN.... ;IIIBIII+HII=IIIIII""IIII -chr1 15 T G 68 0 25 28 ...C.......N............^:. ;I?&IAI0IIIIIII@II#$II@II diff -r 40b9b13ec62b43d83e96d6624edbaea967da82a6 -r f68bd3660813e4d5024a71d84a8a8c0a24ae892a test-data/column_join_in3.pileup --- a/test-data/column_join_in3.pileup +++ /dev/null @@ -1,30 +0,0 @@ -chr1 1 G G 25 0 25 1 ^:. I -chr1 2 T T 25 0 25 1 . I -chr1 3 T T 27 0 25 1 . I -chr1 4 A A 36 0 25 2 .^:. I+ -chr1 5 A A 36 0 25 3 ... III -chr1 6 T T 36 0 25 4 .N.. II#I -chr1 7 G G 42 0 25 5 ...^:.^:. IIIII -chr1 8 T T 45 0 25 6 .....^:. IIIIII -chr1 9 A A 51 0 25 7 .....^:.^:. IBIIIII -chr1 10 G G 54 0 25 9 ........^:. IIIIIIIII -chr1 11 C C 57 0 25 10 .........^:. IIIIIIII"I -chr1 12 T T 60 0 25 11 ..........^:. IIIIIIDIIII -chr1 13 T T 78 0 25 17 ...........^:.^:.^:.^:.^:.^:. IIII"$IIIIIIIIIII -chr1 14 A A 56 0 25 18 .......G.........^:. BIIIIIII+IIIIIIIII -chr1 15 A A 87 0 25 20 ....N.............^:.^:. DIII$III(IIIIIIIIIII -chr4 1 T T 90 0 25 20 ..........N......... IIIIIIIII$IIIIIIIIII -chr4 2 A A 87 0 25 20 .......C............ 9IIIIIIIII"IIIIIIIII -chr4 3 A A 34 0 25 20 ......G............. @IIIIIIIIIIII#IIIIII -chr4 4 T T 55 0 25 21 ...........N.......GG IIIII@IIIIIIIIIIIII'A -chr4 5 A A 54 0 25 21 ...N...............C. IIII"IIIIIIIIIII2II#$ -chr4 6 T T 87 0 25 21 ................N.... IIIIIIII$IIIIIIIIIIII -chr4 7 A A 80 0 25 21 .....G............... III$IIIIIIIIIIIAIIIII -chr4 8 A A 87 0 25 22 ..N................... 9IIIIIIIIII0IIIII"$III -chr4 9 A A 87 0 25 22 .GG.......N........... IIII$IIIII"IIIIICIIIII -chr4 10 G G 57 0 25 23 .....A................^:. A@.$IIIIIIIIIFIIIIIIIII -chr4 11 C C 57 0 25 25 .......A.....GN.......... IIHIDII&III#IIIIIIIIIIIII -chr4 12 A A 99 0 25 26 .......................^:.^:.^:. IE8IFIII9IIIIIII$IIIIIIIII -chr4 13 A A 99 0 25 27 ........N.................. 1FIIIIII$IIIIIIIIIIIIDEIIII -chr4 14 G G 55 0 25 28 ..N...................NN.... ;III$I#IIII+HII=IIIIII""IIII -chr4 15 G G 68 0 25 30 ...C....N..G.................^:. ;I?&IAI0IIIIIII$#I$@IIIIIIIIII diff -r 40b9b13ec62b43d83e96d6624edbaea967da82a6 -r f68bd3660813e4d5024a71d84a8a8c0a24ae892a test-data/column_join_in4.pileup --- a/test-data/column_join_in4.pileup +++ /dev/null @@ -1,25 +0,0 @@ -chr2 1 T 6 .C..., I$$III -chr2 2 G 6 ..N.., III@II -chr2 3 C 7 ..C..., I$IIIII -chr2 4 G 7 .G...., I#IIIII -chr2 5 G 7 ...N.., IIII#BI -chr2 6 A 7 ..T..., I$IDIII -chr2 7 T 8 ...C..., IIIBD$II -chr2 8 A 8 ..A...., IBI#IIII -chr2 9 C 9 .GA..N.., I$IBIII#I -chr2 10 T 9 ........, I$II#IIII -chr2 11 C 10 .>>..T..., IIII@I$I$I -chr2 12 G 10 .N..G...., III$IIIIII -chr2 13 A 11 ....A..T.., IIIIII#I@II -chr1 1 C 1 ^:. I -chr1 2 G 2 .^:. $I -chr1 3 A 2 .. I% -chr1 4 C 2 .. I$ -chr1 5 T 3 ..^:. I#I -chr1 6 G 3 ..^:, I#I -chr1 7 C 4 .N., IIII -chr1 8 A 4 ..., I$II -chr1 9 T 5 ..C., I#IDI -chr1 10 G 5 N..., IBII@ -chr1 11 A 5 .C.., I$II# -chr1 12 C 5 ..N., I$III diff -r 40b9b13ec62b43d83e96d6624edbaea967da82a6 -r f68bd3660813e4d5024a71d84a8a8c0a24ae892a test-data/column_join_in5.pileup --- a/test-data/column_join_in5.pileup +++ /dev/null @@ -1,25 +0,0 @@ -chr1 42 T 1 ^:. I -chr1 43 G 2 .^:. $I -chr1 44 T 2 .. I% -chr1 45 C 3 ..^:. III -chr1 46 G 3 ..^:. I#I -chr1 47 T 4 ...^:, I#II -chr1 48 A 4 .N., IIII -chr1 49 C 5 ...., IIIII -chr1 50 A 5 ..G., IIIDI -chr1 51 A 5 A..., IBIII -chr1 52 A 5 ...., IIII# -chr1 53 G 5 ..N., I$III -chr2 77 C 6 .G..., I$$III -chr2 78 G 6 ..N.., III@II -chr2 79 T 7 ..N..., I$IIIII -chr2 80 C 7 .G...., I#IIIII -chr2 81 G 7 ...A.., IIII#BI -chr2 82 A 8 ...G..., I$IDIIII -chr2 83 A 8 ...T..., IIIBD$II -chr2 84 T 8 ..A...., IBI#IIII -chr2 85 G 8 .GA...., IIBIII#I -chr2 86 C 9 ........, I$II#IIII -chr2 87 G 9 ....T..., IIIII$I$I -chr2 88 G 10 .N..G...., III$IIIIII -chr2 89 G 10 ...A..T.., IIIII#I@II diff -r 40b9b13ec62b43d83e96d6624edbaea967da82a6 -r f68bd3660813e4d5024a71d84a8a8c0a24ae892a test-data/column_join_in6.pileup --- a/test-data/column_join_in6.pileup +++ /dev/null @@ -1,25 +0,0 @@ -chr1 42 C 1 ^:. I -chr1 43 C 2 .^:. II -chr1 44 T 2 .. II -chr1 45 A 3 ..^:. III -chr1 46 G 4 ...^:. IIII -chr1 47 A 5 ....^:, IIIII -chr1 48 T 5 ...N, I#III -chr1 49 G 5 ...., IIIII -chr1 50 A 5 .G.., IIIII -chr1 51 G 5 ...., IIIII -chr2 52 T 5 .N.., II$II -chr2 53 A 5 ...., IIIII -chr2 54 T 5 ...., IIIII -chr2 55 T 5 ...., IIIII -chr2 56 C 5 ...., IIIBI -chr2 57 T 5 ...., IDIII -chr2 58 T 6 .N..., IIIIII -chr2 59 A 6 ....., IIII$I -chr3 60 C 6 ...G., I#IIII -chr3 61 T 6 ..N.., IIIIII -chr3 62 C 6 ...A., IIIIII -chr3 63 C 7 .N...., IIIIIII -chr3 64 A 7 ...G.., IIIII$I -chr3 65 T 7 ...AA., IIIII@@ -chr3 66 A 7 ....N., IIIIIII diff -r 40b9b13ec62b43d83e96d6624edbaea967da82a6 -r f68bd3660813e4d5024a71d84a8a8c0a24ae892a test-data/column_join_in7.pileup --- a/test-data/column_join_in7.pileup +++ /dev/null @@ -1,32 +0,0 @@ -chr2 1 T 6 .C..., I$$III -chr2 2 G 6 ..N.., III@II -chr2 3 C 7 ..C..., I$IIIII -chr2 4 G 7 .G...., I#IIIII -chr2 5 G 7 ...N.., IIII#BI -chr2 6 A 7 ..T..., I$IDIII -chr2 7 T 8 ...C..., IIIBD$II -chr2 8 A 8 ..A...., IBI#IIII -chr2 9 C 9 .GA..N.., I$IBIII#I -chr2 10 T 9 ........, I$II#IIII -chr2 11 C 10 .>>..T..., IIII@I$I$I -chr2 12 G 10 .N..G...., III$IIIIII -chr2 13 A 11 ....A..T.., IIIIII#I@II -chr2 14 G 11 ..N....... IICIBII@AII -chr2 15 C 11 A.....NG.. IIIIIDIIIII -chr2 16 T 11 ...C.....G I$IIIB@IIIC -chr2 17 C 12 G......TN.. IIAII@IIII$I -chr2 18 A 12 N......G..A IIIBIII$IIII -chr2 19 A 13 .......NN... IIIIIIBIII$$@ -chr2 20 C 13 ..GT.......N IIIIABIIC$III -chr1 1 C 1 ^:. I -chr1 2 G 2 .^:. $I -chr1 3 A 2 .. I% -chr1 4 C 2 .. I$ -chr1 5 T 3 ..^:. I#I -chr1 6 G 3 ..^:, I#I -chr1 7 C 4 .N., IIII -chr1 8 A 4 ..., I$II -chr1 9 T 5 ..C., I#IDI -chr1 10 G 5 N..., IBII@ -chr1 11 A 5 .C.., I$II# -chr1 12 C 5 ..N., I$III diff -r 40b9b13ec62b43d83e96d6624edbaea967da82a6 -r f68bd3660813e4d5024a71d84a8a8c0a24ae892a test-data/column_join_in8.pileup --- a/test-data/column_join_in8.pileup +++ /dev/null @@ -1,23 +0,0 @@ -chr1 42 T 1 ^:. I -chr1 43 G 2 .^:. $I -chr1 44 T 2 .. I% -chr1 45 C 3 ..^:. III -chr1 46 G 3 ..^:. I#I -chr1 47 T 4 ...^:, I#II -chr1 48 A 4 .N., IIII -chr1 49 C 5 ...., IIIII -chr1 50 A 5 ..G., IIIDI -chr1 51 A 5 A..., IBIII -chr1 52 A 5 ...., IIII# -chr1 53 G 5 ..N., I$III -chr2 77 C 6 .G..., I$$III -chr2 78 G 6 ..N.., III@II -chr2 79 T 7 ..N..., I$IIIII -chr2 80 C 7 .G...., I#IIIII -chr2 81 G 7 ...A.., IIII#BI -chr2 82 A 8 ...G..., I$IDIIII -chr2 83 A 8 ...T..., IIIBD$II -chr2 84 T 8 ..A...., IBI#IIII -chr2 85 G 8 .GA...., IIBIII#I -chr2 86 C 9 ........, I$II#IIII -chr2 87 G 9 ....T..., IIIII$I$I diff -r 40b9b13ec62b43d83e96d6624edbaea967da82a6 -r f68bd3660813e4d5024a71d84a8a8c0a24ae892a test-data/column_join_in9.pileup --- a/test-data/column_join_in9.pileup +++ /dev/null @@ -1,25 +0,0 @@ -chr1 43 C 2 .^:. II -chr3 65 T 7 ...AA., IIIII@@ -chr1 44 T 2 .. II -chr2 54 T 5 ...., IIIII -chr1 45 A 3 ..^:. III -chr1 47 A 5 ....^:, IIIII -chr1 50 A 5 .G.., IIIII -chr1 51 G 5 ...., IIIII -chr2 52 T 5 .N.., II$II -chr2 53 A 5 ...., IIIII -chr3 60 C 6 ...G., I#IIII -chr3 61 T 6 ..N.., IIIIII -chr1 49 G 5 ...., IIIII -chr2 55 T 5 ...., IIIII -chr2 56 C 5 ...., IIIBI -chr2 58 T 6 .N..., IIIIII -chr2 59 A 6 ....., IIII$I -chr3 62 C 6 ...A., IIIIII -chr1 42 C 1 ^:. I -chr3 63 C 7 .N...., IIIIIII -chr1 48 T 5 ...N, I#III -chr1 46 G 4 ...^:. IIII -chr3 64 A 7 ...G.., IIIII$I -chr3 66 A 7 ....N., IIIIIII -chr2 57 T 5 ...., IDIII diff -r 40b9b13ec62b43d83e96d6624edbaea967da82a6 -r f68bd3660813e4d5024a71d84a8a8c0a24ae892a test-data/column_join_out1.pileup --- a/test-data/column_join_out1.pileup +++ /dev/null @@ -1,60 +0,0 @@ -chr1 1 ? ? ? ? T T 87 25 G G 25 25 -chr1 2 ? ? ? ? A T 87 25 T T 25 25 -chr1 3 ? ? ? ? A G 87 25 T T 27 25 -chr1 4 ? ? ? ? A T 55 25 A A 36 25 -chr1 5 ? ? ? ? C A 54 25 A A 36 25 -chr1 6 ? ? ? ? G T 87 25 T T 36 25 -chr1 7 ? ? ? ? A C 87 25 G G 42 25 -chr1 8 ? ? ? ? G A 87 25 T T 45 25 -chr1 9 ? ? ? ? A T 87 25 A A 51 25 -chr1 10 ? ? ? ? G A 57 25 G G 54 25 -chr1 11 ? ? ? ? C A 57 25 C C 57 25 -chr1 12 ? ? ? ? T A 99 25 T T 60 25 -chr1 13 ? ? ? ? A C 99 25 T T 78 25 -chr1 14 ? ? ? ? G C 55 25 A A 56 25 -chr1 15 ? ? ? ? T G 68 25 A A 87 25 -chr4 1 ? ? ? ? ? ? ? ? T T 90 25 -chr4 2 ? ? ? ? ? ? ? ? A A 87 25 -chr4 3 ? ? ? ? ? ? ? ? A A 34 25 -chr4 4 ? ? ? ? ? ? ? ? T T 55 25 -chr4 5 ? ? ? ? ? ? ? ? A A 54 25 -chr4 6 ? ? ? ? ? ? ? ? T T 87 25 -chr4 7 ? ? ? ? ? ? ? ? A A 80 25 -chr4 8 ? ? ? ? ? ? ? ? A A 87 25 -chr4 9 ? ? ? ? ? ? ? ? A A 87 25 -chr4 10 ? ? ? ? ? ? ? ? G G 57 25 -chr4 11 ? ? ? ? ? ? ? ? C C 57 25 -chr4 12 ? ? ? ? ? ? ? ? A A 99 25 -chr4 13 ? ? ? ? ? ? ? ? A A 99 25 -chr4 14 ? ? ? ? ? ? ? ? G G 55 25 -chr4 15 ? ? ? ? ? ? ? ? G G 68 25 -chrM 1 A G 25 25 T G 25 25 ? ? ? ? -chrM 2 C T 25 25 C A 25 25 ? ? ? ? -chrM 3 T G 27 25 C A 25 25 ? ? ? ? -chrM 4 G C 36 25 G A 36 25 ? ? ? ? -chrM 5 T A 38 25 A T 36 25 ? ? ? ? -chrM 6 T A 39 25 A G 36 25 ? ? ? ? -chrM 7 G C 43 25 C G 42 25 ? ? ? ? -chrM 8 A C 46 25 T T 45 25 ? ? ? ? -chrM 9 T G 53 25 C A 51 25 ? ? ? ? -chrM 10 T G 56 25 G G 54 25 ? ? ? ? -chrM 11 C G 57 25 T C 57 25 ? ? ? ? -chrM 12 T C 61 25 A T 60 25 ? ? ? ? -chrM 13 T G 79 25 A T 78 25 ? ? ? ? -chrM 14 A C 58 25 G A 56 25 ? ? ? ? -chrM 15 G A 87 25 G A 87 25 ? ? ? ? -chrM 16 G C 88 25 ? ? ? ? ? ? ? ? -chrM 17 A C 88 25 ? ? ? ? ? ? ? ? -chrM 18 G A 89 25 ? ? ? ? ? ? ? ? -chrM 19 G T 58 25 ? ? ? ? ? ? ? ? -chrM 20 T C 55 25 ? ? ? ? ? ? ? ? -chrM 21 C T 87 25 ? ? ? ? ? ? ? ? -chrM 22 C A 87 25 ? ? ? ? ? ? ? ? -chrM 23 A G 87 25 ? ? ? ? ? ? ? ? -chrM 24 A T 89 25 ? ? ? ? ? ? ? ? -chrM 25 G A 57 25 ? ? ? ? ? ? ? ? -chrM 26 C G 58 25 ? ? ? ? ? ? ? ? -chrM 27 T A 99 25 ? ? ? ? ? ? ? ? -chrM 28 A C 99 25 ? ? ? ? ? ? ? ? -chrM 29 G C 58 25 ? ? ? ? ? ? ? ? -chrM 30 T T 65 25 ? ? ? ? ? ? ? ? diff -r 40b9b13ec62b43d83e96d6624edbaea967da82a6 -r f68bd3660813e4d5024a71d84a8a8c0a24ae892a test-data/column_join_out2.pileup --- a/test-data/column_join_out2.pileup +++ /dev/null @@ -1,65 +0,0 @@ -chr1 1 C 1 -chr1 2 G 2 -chr1 3 A 2 -chr1 4 C 2 -chr1 5 T 3 -chr1 6 G 3 -chr1 7 C 4 -chr1 8 A 4 -chr1 9 T 5 -chr1 10 G 5 -chr1 11 A 5 -chr1 12 C 5 -chr1 42 T 1 C 1 -chr1 43 G 2 C 2 -chr1 44 T 2 T 2 -chr1 45 C 3 A 3 -chr1 46 G 3 G 4 -chr1 47 T 4 A 5 -chr1 48 A 4 T 5 -chr1 49 C 5 G 5 -chr1 50 A 5 A 5 -chr1 51 A 5 G 5 -chr1 52 A 5 -chr1 53 G 5 -chr2 1 T 6 -chr2 2 G 6 -chr2 3 C 7 -chr2 4 G 7 -chr2 5 G 7 -chr2 6 A 7 -chr2 7 T 8 -chr2 8 A 8 -chr2 9 C 9 -chr2 10 T 9 -chr2 11 C 10 -chr2 12 G 10 -chr2 13 A 11 -chr2 52 T 5 -chr2 53 A 5 -chr2 54 T 5 -chr2 55 T 5 -chr2 56 C 5 -chr2 57 T 5 -chr2 58 T 6 -chr2 59 A 6 -chr2 77 C 6 -chr2 78 G 6 -chr2 79 T 7 -chr2 80 C 7 -chr2 81 G 7 -chr2 82 A 8 -chr2 83 A 8 -chr2 84 T 8 -chr2 85 G 8 -chr2 86 C 9 -chr2 87 G 9 -chr2 88 G 10 -chr2 89 G 10 -chr3 60 C 6 -chr3 61 T 6 -chr3 62 C 6 -chr3 63 C 7 -chr3 64 A 7 -chr3 65 T 7 -chr3 66 A 7 diff -r 40b9b13ec62b43d83e96d6624edbaea967da82a6 -r f68bd3660813e4d5024a71d84a8a8c0a24ae892a test-data/column_join_out3.pileup --- a/test-data/column_join_out3.pileup +++ /dev/null @@ -1,70 +0,0 @@ -chr1 1 C 1 ^:. X X -chr1 2 G 2 .^:. X X -chr1 3 A 2 .. X X -chr1 4 C 2 .. X X -chr1 5 T 3 ..^:. X X -chr1 6 G 3 ..^:, X X -chr1 7 C 4 .N., X X -chr1 8 A 4 ..., X X -chr1 9 T 5 ..C., X X -chr1 10 G 5 N..., X X -chr1 11 A 5 .C.., X X -chr1 12 C 5 ..N., X X -chr1 42 X T 1 ^:. C 1 ^:. -chr1 43 X G 2 .^:. C 2 .^:. -chr1 44 X T 2 .. T 2 .. -chr1 45 X C 3 ..^:. A 3 ..^:. -chr1 46 X G 3 ..^:. G 4 ...^:. -chr1 47 X T 4 ...^:, A 5 ....^:, -chr1 48 X A 4 .N., T 5 ...N, -chr1 49 X C 5 ...., G 5 ...., -chr1 50 X A 5 ..G., A 5 .G.., -chr1 51 X A 5 A..., G 5 ...., -chr1 52 X A 5 ...., X -chr1 53 X G 5 ..N., X -chr2 1 T 6 .C..., X X -chr2 2 G 6 ..N.., X X -chr2 3 C 7 ..C..., X X -chr2 4 G 7 .G...., X X -chr2 5 G 7 ...N.., X X -chr2 6 A 7 ..T..., X X -chr2 7 T 8 ...C..., X X -chr2 8 A 8 ..A...., X X -chr2 9 C 9 .GA..N.., X X -chr2 10 T 9 ........, X X -chr2 11 C 10 .>>..T..., X X -chr2 12 G 10 .N..G...., X X -chr2 13 A 11 ....A..T.., X X -chr2 14 G 11 ..N....... X X -chr2 15 C 11 A.....NG.. X X -chr2 16 T 11 ...C.....G X X -chr2 17 C 12 G......TN.. X X -chr2 18 A 12 N......G..A X X -chr2 19 A 13 .......NN... X X -chr2 20 C 13 ..GT.......N X X -chr2 52 X X T 5 .N.., -chr2 53 X X A 5 ...., -chr2 54 X X T 5 ...., -chr2 55 X X T 5 ...., -chr2 56 X X C 5 ...., -chr2 57 X X T 5 ...., -chr2 58 X X T 6 .N..., -chr2 59 X X A 6 ....., -chr2 77 X C 6 .G..., X -chr2 78 X G 6 ..N.., X -chr2 79 X T 7 ..N..., X -chr2 80 X C 7 .G...., X -chr2 81 X G 7 ...A.., X -chr2 82 X A 8 ...G..., X -chr2 83 X A 8 ...T..., X -chr2 84 X T 8 ..A...., X -chr2 85 X G 8 .GA...., X -chr2 86 X C 9 ........, X -chr2 87 X G 9 ....T..., X -chr3 60 X X C 6 ...G., -chr3 61 X X T 6 ..N.., -chr3 62 X X C 6 ...A., -chr3 63 X X C 7 .N...., -chr3 64 X X A 7 ...G.., -chr3 65 X X T 7 ...AA., -chr3 66 X X A 7 ....N., diff -r 40b9b13ec62b43d83e96d6624edbaea967da82a6 -r f68bd3660813e4d5024a71d84a8a8c0a24ae892a test-data/column_join_out4.pileup --- a/test-data/column_join_out4.pileup +++ /dev/null @@ -1,65 +0,0 @@ -0610009D07Rik 2 2 3 2 4 2 -0610010K14Rik 1 1 1 1 -1110002N22Rik 2 2 3 2 2 2 -1110008L16Rik 3 2 1 1 6 2 -1110037F02Rik 1 1 -1110054O05Rik 1 1 -1190005F20Rik 4 2 -Acot8 1 2 -Acta1 2 2 2 2 -Actb 1 2 2 2 -Actg1 2 2 1 2 -Actl6a 2 1 1 1 -Actl6b 1 1 1 2 -Actn1 1 1 -Actn4 1 1 -Bend3 1 1 -Bend5 1 1 -Bnc2 1 1 1 1 -Bptf 1 1 -Brip1 1 1 2 1 -Brms1l 1 2 -Btf3;Gm3531 1 1 1 2 -Bub3 2 2 3 1 1 2 -C1d 1 1 -C130039O16Rik 1 1 -C330007P06Rik 1 1 -Cad 4 1 1 1 -Calm1;Calm3;Calm2 2 1 1 1 -Caprin1 2 2 -Cbx1 2 2 -Cbx3 2 2 -E2f6 2 2 1 2 -E130012A19Rik 2 2 -Eed 1 2 1 1 -Efha1 1 1 -Exosc1 3 2 -Exosc10 25 2 -Gm189 1 2 1 2 2 2 -Gm3200 1 1 -Gm9855;Tdg 2 2 -Gm10079 2 1 -Gm11230 2 1 -Gm12620 1 1 -Gm13072;Trmt112 1 1 -Gm13092;LOC677017 1 1 1 2 -Gm14173;Rpl37a;Gm4149 1 2 -Gm14231 1 1 -Gm14393;2210418O10Rik;Gm14296;Gm14401;RP23-330D3.5 1 1 -Gm14456;Tpt1 1 1 -Gm15501;Rps8 1 1 -Sfrs7 1 2 -Sfrs11 3 2 4 2 -Sfrs12 2 2 -Sin3a 1 2 4 2 1 1 -Sirt7 1 1 1 1 -Ski 1 1 -Skil 1 1 -Skiv2l2 12 2 34 2 -Tubb2b 4 2 3 2 -Tubb2c 1 1 -Tubb2c-ps1 1 2 -Tubb4 1 1 -Zscan4-ps2 1 2 -Zscan4e 1 1 2 2 -Zscan4f 2 2 2 2 2 2 diff -r 40b9b13ec62b43d83e96d6624edbaea967da82a6 -r f68bd3660813e4d5024a71d84a8a8c0a24ae892a test-data/column_join_out5.tabular --- a/test-data/column_join_out5.tabular +++ /dev/null @@ -1,12 +0,0 @@ -1 i i2 0 -2 ii 0 i3 -3 0 ii2 ii3 -4 0 iii2 iii3 -5 0 0 0 -6 0 iv2 iv3 -7 iii 0 v3 -8 0 v2 0 -9 0 vi2 vi3 -10 0 vii2 vii3 -11 iv viii2 0 -alpha 0 epsilon 0 diff -r 40b9b13ec62b43d83e96d6624edbaea967da82a6 -r f68bd3660813e4d5024a71d84a8a8c0a24ae892a test-data/dnds_inp.fasta --- a/test-data/dnds_inp.fasta +++ /dev/null @@ -1,76 +0,0 @@ ->human -ATGGCTGTGGCCCTGGGTTGTGCAATCCAGGCATCCTTGAATCAAGGCTCTGTGTTTCAAGAATATGATACTGACTGTGAAGTTTTCCGTCAGCGCTTCAGGCAGTTCCAGTACAGAGAAGCAGCTGGGCCTCATGAAGCATTTAACAAACTCTGGGAGCTTTGCTGTCAATGGCTGAAGCCAAAGATGCGCTCTAAGGAACAAATCCTGGAGCTGCTAGTGTTGGAGCAATTCCTAACTATCCTGCCCACAGAGATAGAGACCTGGGTGAGGGAGCACTGCCCAGAGAATAGAGAAAGAGTTGTGTCACTGATAGAAGACTTACAGAGAGAACTTGAGATACCAGAGCAGCAGGTTGATATGCATGACATGCTCTTGGAAGAACTGGCACCAGTGGGAACGGCACACATACCACCAACCATGCACCTAGAGTCACCTGCACTCCAGGTAATGGGACCTGCCCAGGAGGCCCCAGTAGCAGAGGCATGGATCCCACAGGCAGGGCCACCGGAGCTGAACTATGGTGCTACTGGAGAATGTCAGAACTTTCTGGACCCTGGATATCCATTACCAAAACTTGACATGAACTTCTCATTGGAGAATAGAGAAGAGCCATGGGTGAAGGAATTACAGGATTCTAAAGAAATGAAACAATTACTTGATTCCAAGATAGGTTTTGAGATCGGGATAGAAAATGAAGAAGATACTTCAAAACAGAAAAAAATGGAGACTATGTATCCATTTATTGTAACTTTAGAGGGGAATGCTCTCCAGGGTCCCATTTTGCAAAAAGACTATGTACAGTTAGAAAATCAATGGGAAACCCCCCCAGAGGATTTACAGACAGATTTAGCAAAACTGGTAGATCAGCAGAACCCCACTCTGGGAGAGACACCTGAGAACTCCAACTTGGAAGAACCTCTCAACCCTAAACCCCACAAGAAAAAGAGTCCAGGAGAGAAACCTCACCGATGTCCTCAGTGTGGAAAATGTTTTGCTCGGAAGTCACAACTTACTGGGCATCAGAGAATTCATTCAGGAGAAGAACCTCACAAATGCCCTGAATGTGGGAAAAGATTCCTTCGTAGTTCAGACCTTTATAGACACCAACGACTTCATACAGGGGAGAGACCCTATGAATGCACTGTATGTAAAAAGCGATTCACTCGGCGGTCACATCTTATAGGGCACCAGAGAACCCATTCTGAAGAAGAAACATATAAATGTCTTGAGTGTGGGAAAAGTTTTTGTCATGGATCAAGTCTTAAAAGACATCTGAAAACTCATACAGGTGAAAAACCTCATAGATGTCATAATTGTGGGAAAAGTTTTAGTCGACTGACAGCTCTTACTTTGCACCAGAGAACGCATACTGAAGAGAGACCTTTTAAATGTAATTATTGTGGGAAAAGTTTTAGACAGAGACCAAGCCTCGTTATTCATTTAAGAATCCACACAGGGGAGAAGCCATACAAGTGTACTCATTGTTCTAAAAGCTTCAGACAGAGAGCCGGCCTTATTATGCACCAGGTCACTCACTTTAGAGGACTTATTTAA ->chimp -ATGGCTGTGGCCCTGGGTTGTGCAATCCAGGCATCCTTGAATCAAGGCTCTGTGTTTCAAGAATATGATACTGACTGTGAAGTTTTCCGTCAGCGCTTCAGGCAGTTCCAGTACAGAGAAGCAGCTGGGCCTCATGAAGCATTTAACAAACTCTGGGAACTTTGCTGTCAATGGCTGAAGCCAAAGATGCGCTCTAAGGAACAAATCCTGGAGCTGCTAGTGTTGGAGCAATTCCTAACTATCCTGCCCACAGAGATAGAGACCTGGGTGAGGGAGCACTGCCCAGAGAATAGAGAAAGAGTTGTGTCACTGATAGAAGACTTACAGAGAGAACTTGAGATACCAGAGCAGCAG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GATATCCATTACCCAAACTTGACATGAACTTCTCATTGGAGAATAGAGAAGAGCCATGGGTGAAGGAATTACAGGATTCTAAAGAAATGAAACAATTACTTGATTCCAAGATAGGTTTTGAGATCGGGATAGAAAATGAAGAAGATACTTCAAAACAGAAAAAAATGGAGACTATGTATCCATTTATTGTAACTTTAGAGGGGAATGCTCTCCAGGGTCCCATTTTGCAAAAAGACTATGTACAGTTAGAAAATCAATGGGAAACCCCCCCAGAGGATTTACAGAGAGATTTAGCAAAACTGGTAGATCAGCAGAACCCCACTCTGGGAGAGACACCTGAGAACTCCAACTTGGAAGAACCTCTCAACCCTAAACCCCACAAGAAAAAGAGTCCAGGAGAGAAACCTCACCGATGTCCTCAGTGTGGAAAATGTTTTGCTCGGAAGTCACAACTTACTGGGCATCAGAGAATTCATTCAGGAGAAGAACCTCACAAATGCCCTGAATGTGGGAAAAGATTCCTTCGTAGTTCAGACCTTTATAGACACCAACGACTTCATACAGGGGAGAGACCCTATGAATGCACTGTATGTAAAAAGCGATTCACTCGGCGGTCACATCTTATAGGGCACCAGAGAACCCATTCTGAAGAAGAAACATATAAATGTCTTGAGTGTGGGAAAAGTTTTTGTCATGGATCAAGTCTTAAAAGACATCTGAAAACTCATACAGGTGAAAAACCTCATAGATGTCATAATTGTGGGAAAAGTTTTAGTCGACTGACAGCTCTTACTTTGCACCAGAGAACGCATACTGAAGAGAGACCTTTTAAATGTAATTATTGTGGGAAAAGTTTTAGACAGAGACCAAGCCTCGTTATTCATTTAAGAATCCACACAGGGGAGAAGCCATACAAGTGTACTCATTGTTCTAAAAGCTTCAGACAGAGAGCCGGCCTTATTATGCACCAGGTCACTCACTTTAGAGGACTTATTTAA ->mouse -ATGGCTGTGGCCCTGGGCTGTGCAATCCAGGCCTCCTTGAATCAGGGCTCTGTGCTGCAAGAGTATGACACAGACTGTGAAGTTTTCCGACAGCGTTTCAGGCAGTTCCAGTACACAGAAGCTGCCGGGCCTCATGAAGCATTCAACAAACTCTGGGAGCTTTGCTGTCAGTGGCTGAAGCCAAAGATGCGTTCTAAGGAACAAATCCTGGAACTGCTTGTGCTAGAGCAATTCCTAACTATTCTGCCCACAGAAATAGAGACCTGGGTGAGGGAACACTGCCCAGACAATAGAGAAAGAGTTGTGTCACTCATTGAAGACTTACAAAGAGAGCTTGAGATACCAGAACCACAGATTGACATGGATGACATGCTCTTGGAAGAACTGGCGCCAGTTGGAACAGTACCCATGCCACCCAACTTGCACCTGGAGGAGCCTTCACTCCAGGTGATGGAACCTGTTCAGGAGCCTCCGGTGCCGGATGCCTGGATTCCACAAGCTGGCCCCCAGGATCTGAACTACAGTGCTGATGCTGAATGCCAGTCCTTTCTGGACCCTGGTTATCAGTTACCAAAGCTTGACATGAACTTCCCATTGGATCATAGAGAAGAACCATGGGTAAAAGACTTAGAGGATCCCAAAGAAATGAAACAATTACTTGATTCCAAGATTGGTTTTGAGATGGGAATAGAAAATGAAGAAGATACTTCAAAGGAAAAAAAACTGGAAACTTTGTACCCATTTGTTGTAACTTTAGAAGGGAATGCTCTCCATGGTCCCATTTTGCAGAAAGACTATGTGCAGTTAGAAAACCAATGGGAAACATCCCCAGAGGACTTACAGACAGACCTAACAAAACTCGTAGATCCTCAGAACCCAACTCTAGGAGAGACACCCGAGAGCCCCAGCCTGGAAGAACCTCTCACCCCGAAGCCTCCAAAGAAAAAGAGTCCTGGGGACAAACCTCACCGATGTCCCCAGTGTGGCAAATGTTTCGCTCGGAAGTCACAACTTACAGGGCACCAGCGAATTCATTCAGGAGAAGAACCTCACAAGTGCCCTGAATGCGGAAAAAGGTTCCTGCGTAGCTCTGACCTTTACAGACACCAACGACTTCACACAGGAGAAAGACCCTATGAATGCACTGTATGTAAAAAGCGATTCACTAGGCGCTCACACCTTCTTGGGCACCAGAGAACCCATTCTGAAGAAGAAACATATAAATGTCTTGAGTGTGGAAAAACCTTTTGTCATGGGTCAAGTCTTAAAAGACATCTAAAAACTCATACAGGTGAAAAGCCTCATAGATGTCCTAATTGTGGGAAAAGTTTTAGTCGCCTGACGGCACTTACTTTGCACCAGAGAACACACACGGAAGAGAGACCTTTTAAATGTAGTTACTGTGGGAAAAGCTTTAGACAGAGACCAAGCCTTGTCATTCATTTAAGAATCCATACAGGGGAAAAGCCATACAAGTGTACTCATTGTTCTAAAAGCTTCCGGCAGAGAGCAGGCCTTATTATGCACCAGGTCACACACTTTAGAGGACTTCTTTAA - ->human -?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CTTCTAGGGACCTATTAAAAGAGTTCCCACAGCCCAAAAATCTTCTCAACAGTGTGATTGGAAGAGCCCTCGGCATCTCACATGCAAAAGACAAACTAGTCTACGTGCACACAAATGGACCGAAGAAAAAGAAAGTCACACTGCACATAAAATGGCCCAAGAGCGTGGAGGTAGAAGGCTATGGCAGCAAGAAGATCGATGCTGAGCGGCAGGCTGCAGCTGCAGCCTGCCAGCTGTTCAAGGGTTGGGGTCTGCTAGGTCCCCGGAATGAGTTGTTTGACGCAGCCAAATACCGAGTGCTAGCTGATCGCTTTGGCTCCCCTGCCGACAGCTGGTGGCGTCCGGAACCCACCATGCCCCCTACTTCCTGGCGGCAGCTGAATCCAGAGAGTATTCGACCAGGGGGACCTGGGGGCCTATCCCGCTCTTTAGGCCGGGAAGAAGAGGAGGACGAGGAGGAAGAGCTAGAAGAAGGGACCATAGATGTTACCGACTTCTTGTCCATGACCCAGCAGGATTCCCACGCTCCACTCAGGGACTCAAGGGGGAGTTCCTTTGAGATGACAGATGACGACAGTGCCATTAGGGCTCTGACCCAGTTTCCACTTCCCAAGAACCTTCTGGCCAAGGTGATTCAGATTGCAACGTCATCCTCCACAGCTAAGAACCTCATGCAGTTCCATACTGTGGGCACCAAGACCAAGCTGTCTACACTCACCCTGCTCTGGCCCTGCCCCATGACCTTTGTTGCCAAAGGGCGCCGCAAAGCAGAGGCTGAGAATAAGGCGGCAGCCTTGGCCTGCAAGAAACTGAAGAGCCTGGGCCTGGTGGACAGGAACAACGAACCGCTTACACACGCCATGTATAACCTGGCCTCTTTGCGTGAGCTGGGTGAGACCCAGCGCCGACCATGCACCATCCAGGTGCCCGAGCCCATCCTCCGCAAGATAGAGACCTTCCTGAACCATTACCCTGTGGAGAGTTCATGGATCGCCCCAGAACTCCGGCTGCAGAGTGATGACATCTTGCCCTTGGGCAAGGACTCAGGGCCTCTGAGTGACCCTATCACAGGCAAGCCCTATGTGCCCCTGTTGGAAGCAGAGGAGGTACGTCTCAGCCAGAGTCTGCTAGAACTGTGGCGGCGGCGAGGGCCGGTCTGGCAGGAGGCCCCCCAGCTACCTGTGGACCCACATCGGGACACCATCCTCAACGCCATTGAGCAGCACCCGGTGGTGGTCATCTCTGGGGACACGGGCTGTGGGAAGACCACGCGCATCCCCCAGCTGTTGCTGGAGCGCTATGTGACCGAGGGCCGAGGTGCCCGCTGCAATGTTATCATCACCCAACCTCGCCGCATCTCTGCTGTGTCTGTGGCACAGCGGGTCAGCCACGAACTGGGCCCCTCCCTGCGCCGGAATGTGGGCTTCCAGGTGCGGTTGGAAAGTAAGCCCCCATCCCGAGGCGGGGCCCTGCTCTTCTGCACTGTGGGTATCCTGCTGCGTAAGCTGCAGAGCAACCCCAGCCTGGAGGGCGTGAGCCACGTCATCGTGGATGAGGTGCATGAGCGGGACGTGAACACAGACTTTCTGCTGATCCTGCTCAAGGGCCTGCAGCGGCTCAACCCGGCCCTGCGGCTGGTGCTCATGAGTGCCACAGGGGACAATGAGCGCTTCTCCCGATACTTTGGTGGCTGCCCCGTCATCAAGGTGCCTGGCTTCATGTACCCAGTCAAGGAGCACTACCTAGAGGACATCCTGGCCAAGTTGGGCAAGCACCAGTACCTGCACCGGCACCGGCACCATGAGTCTGAGGATGAATGCGCACTCGATTTGGACCTTGTGACTGATCTGGTTCTGCACATCGATGCTCGCGGGGAACCAGGTGGGATCCTGTGCTTCCTGCCTGGGTGGCAGGAGATCAAAGGAGTGCAGCAGCGCCTCCAGGAGGCCCTGGGCATGCACGAGAGCAAGTACCTCATCCTGCCAGTGCACTCCAACATCCCCATGATGGATCAGAAGGCCATATTCCAGCAGCCTCCAGTTGGGGTGCGCAAGATTGTCTTGGCCACCAACATTGCTGAGACTTCCATCACAATCAATGACATCGTGCATGTGGTGGACAGTGGGCTGCACAAGGAAGAACGCTATGACCTGAAGACCAAGGTGTCCTGCCTGGAGACAGTGTGGGTATCAAGAGCCAATGTGATCCAGCGCCGGGGCCGGGCGGGCCGCTGCCAGTCCGGCTTTGCCTACCACTTGTTCCCTCGAAGCCGGCTGGAGAAAATGGTCCCTTTCCAAGTGCCAGAGATCCTGCGCACACCTCTTGAGAACCTGGTGCTGCAAGCGAAAATCCACATGCCTGAGAAGACGGCGGTGGAGTTCCTGTCCAAGGCTGTGGACAGTCCAAACATCAAGGCAGTGGACGAGGCTGTGATCTTGCTCCAGGAGATCGGGGTGCTGGACCAGCGGGAGTACCTGACTACCCTGGGGCAGCGCCTGGCTCACATCTCCACCGACCCCCGGTTGGCCAAGGCCATTGTGTTGGCTGCCATCTTCCGTTGCCTGCACCCACTACTGGTGGTCGTTTCCTGCCTCACCCGGGACCCCTTCAGCAGCAGCCTACAGAACCGGGCAGAGGTGGACAAGGTGAAAGCACTGTTGAGCCATGACAGCGGCAGTGACCACCTGGCCTTTGTGCGGGCTGTCGCCGGCTGGGAGGAGGTGCTGCGTTGGCAGGACCGCAGCTCCCGGGAGAATTACCTGGAGGAAAACCTGCTGTACGCACCCAGCCTGCGCTTCATCCACGGACTCATCAAGCAGTTCTCAGAGAACATTTATGAGGCCTTCCTGGTGGGGAAGCCCTCGGACTGCACCCTGGCCTCCGCCCAGTGCAACGAGTACAGTGAGGAGGAGGAGCTGGTGAAGGGCGTGCTGATGGCCGGCCTCTACCCCAACCTCATCCAGGTGAGGCAGGGCAAGGTCACCCGGCAGGGGAAGTTCAAGCCCAACAGCGTCACATATAGGACCAAATCAGGCAACATCCTGCTGCACAAGTCGACCATTAACAGGGAGGCCACACGGTTACGGAGCCGATGGCTGACGTATTTCATGGCAGTCAAGTCCAATGGCAGCGTCTTCGTCCGGGACTCCTCTCAGGTGCACCCGCTAGCTGTGCTGCTGCTGACCGACGGGGACGTGCACATCCGTGATGACGGGCGCCGGGCCACCATCTCACTGAGCGACAGTGACCTGCTGCGGCTGGAGGGTGACTCGCGTACCGTGCGGCTGCTGAAGGAGCTGCGGCGGGCCCTGGGCCGCATGGTGGAGCGGAGCCTGCGCAGCGAGCTGGCTGCACTTCCCCCCAGCGTACAGGAGGAGCACGGGCAGCTGCTTGCGCTACTGGCAGAGCTGCTGCGAGGACCCTGTGGCAGCTTTGATGTGCGCAAGACAGCTGACGACTGA ->chimp -????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????AAAGTCACACTGCACATAAAGTGGCCCAAGAGCGTGGAGGTAGAAGGCTATGGCAGCAAGAAGATCGATGCTGAGCGGCAGGCTGCAGCTGCGGCCTGCCAGCTGTTCAAGGGTTGGGGTCTG??AGGTCCCCGGAATGAGTTGTTTGACGCAGCCAAATACCGAGTGCTAGCTGATCGCTTTGGCTCCCCTGCCGACAGCTGGTGGCGTCCGGAACCCACCATGCCCCCTACTTCCTGGCGGCAGCTGAATCCAGAGAGTATTCGACCAGGGGGACCTGGGGGCCTATCCCGCTCTTTAGGCCGGGAAGAAGAGGAGGACGAGGAGGAAGAGCTAGAAGAAGGGACCATAGATGTTACCGACTTCTTGTCCATGACCCAGCAGGATTCCCACGCTCCACTCAGGGACTCAAGGGGGAGTTCCTTTGAGATGACAGATGACGACAGTGCCATTAGGGCTCTGACCCAGTTTCCACTTCCCAAGAACCTTCTGGCCAAGGTGATTCAGATTGCAACGTCATCCTCCACAGCTAAGAACCTCATGCAGTTCCATACTGTGGGCACCAAGACCAAGCTGTCTACACTCACCCTGCTCTGGCCCTGCCCCATGACCTTTGTTGCCAAAGGGCGCCGCAAAGCAGAGGCTGAGAATAAGGCGGCAGCCTTGGCCTGCAAGAAACTGAAGAGCCTGGGCCTGGTGGACAGGAACAACGAACCGCTTACACACGCCATGTATAACCTGGCCTCTTTGCGTGAGCTGGGTGAGACCCAGCGCCGACCATGCACCATCCAGGTGCCCGAGCCCATCCTCCGCAAGATAGAGACCTTCCTGAACCATTACCCTGTGGAGAGTTCATGGATCGCCCCAGAACTCCGGCTGCAGAGTGATGACATCTTGCCCTTGGGCAAGGACTCAGGGCCTCTGAGTGACCCTATCACAGGCAAGCCCTATGTGCCCCTGTTGGAAGCAGAGGAGGTACGTCTCAGCCAGAGTCTGCTAGAACTGTGGCGGCGGCGAGGGCCGGTCTGGCAGGAGGCCCCCCAGCTACCTGTGGACCCACATCGGGACACCATCCTCAACG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CCTCCCTGCGCCGGAATGTGGGCTTCCAGGTGCGGTTGGAAAGTAAGCCCCCATCCCGAGGCGGGGCCCTGCTCTTCTGCACTGTGGGTATCCTGCTGCGTAAGCTGCAGAGCAACCCCAGCCTGGAGGGCGTGAGCCACGTCATCGTGGATGAGGTGCATGAGCGGGACGTGAACACAGACTTTCTGCTGATCCTGCTCAAGGGCCTGCAGCGGCTCAACCCGGCCCTGCGGCTGGTGCTCATGAGTGCCACAGGGGACAATGAGCGCTTCTCCCGATACTTTGGTGGCTGCCCCGTCATCAAGGTGCCTGGCTTCATGTACCCAGTCAAGGAGCACTACCTAGAGGACATCCTGGCCAAGTTGGGCAAGCACCAGTACCTGCACCGGCACCGGCACCATG?????????????????????????????????????????????????????????????????????????????????????????????????????????GGCAGGAGATCAAAGGAGTGCAGCAGCGCCTCCAGGAGGCCCTGGGCATGCACGAGAGCAAGTACCTCATCCTGCCAGTGCACTCCAACATCCCCATGATGGATCAGAAGGCCATATTCCAGCAGCCTCCAGTTGGGGTGCGCAAGATTGTCTTGGCCACCAACATTGCTGAGACTTCCATCACAATCAATGACATCGTGCATGTGGTGGACAGTGGGCTGCACAAGGAAGAACGCTATGACCTGAAGACCAAGGTGTCCTGCCTGGAGACAGTGTGGGTATCAAGAGCCAATGTGATCCAGCGCCGGGGCCGGGCGGGCCGCTGCCAGTCCGGCTTTGCCTACCACTTGTTCCCTCGAAGCCGGCTGGAGAAAATGGTCCCTTTCCAAGTGCCAGAGATCCTGCGCACACCTCTCGAGAACCTGGTGCTGCAAGCAAAAATCCACATGCCTGAGAAGACGGCGGTGGAGTTCCTGTCCAAGGCTGTGGACAGTCCAAACATCAAGGCAGTGGACGAGGCTGTGATCTTGCTCCAGGAGATCGGGGTGCTGGACC??CGGGAGTACCTGACTACCCTGGGGCAGCGCCTGGCTCACATCTCCACCGACCCCCGGTTGGCCAAGGCCATTGTGTTGGCTGCCATCTTCCGTTGCCTGCA???ACTACTGGTG????TTTCCTGCCTCACCCGGGACCCCTTC????????????????????????????????????GTGAAAGCACTG?TGAGCCATGACAGCGGCAGTGACCACCTGGCCTTTGTGCGGGCTGTCGCCGGCTGGGAGGAGGTGCTGCGTTGGCAGGACCGCAGCTCCCGGGAGAATTACCTGGAGGAAAACCTGCTCTACGCACCCAGCCTGCGCTTCATCCACGGACTCATCAAGCAGTTCTCAGAGAACATTTATGAGGCCTTCCTGGTGGGGAAGCCCTCGGACTGCACCCTGGCCTCCGCCCAGTGCAACGAGTACAGTGAGGAGGAGGAGCTGGTGAAGGGCGTGCTGATGGCCGGCCTCTACCCCAACCTCATCCAGGTGAGGCAGGGCAAGGTCACCCGGCAGGGGAAGTTCAAGCCCAACAGCGTCACATATAGGACCAAATCAGGCAACATCCTGCTGCACAAGTCGACCATTAACAGGGAGGCCACACGGTTACGGAGCCGATGGCTGACGTATTTCATGGCAGTCAAGTCCAATGGCAGCGTCTTCGTCCGGGACTCCTCTCAGGTGCACCCGCTAGCTGTGCTGCTGCTGACCGACGGGGACGTGCACATCCGTG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? ->mouse -?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CTTCTAGGGACCTATTAAAAGAGTTTCCGCAGCCTAAAAACCTTCTCAACAGCGTGATTGGAAGAGCCCTTGGCATCTCACATGCAAAAGACAAGTTAGTCTATGTGCACACGAATGGACCGAAGAAAAAGAAAGTCACCCTGCACATAAAGTGGCCCAAGAGCGTGGAGGTGGAAGGCTATGGCAGCAAGAAGATTGATGCTGAGCGTCAGGCTGCAGCAGCTGCCTGCCAACTCTTCAAGGGCTGGGGTCTGCTGGGACCACGGAATGAGCTGTTTGATGCAGCTAAATACCGAGTGCTAGCTGATCGTTTTGGGTCTCCAGCTGACAGCTGGTGGCGCCCAGAACCCACCATGCCTCCAACTTCCTGGCGGCAGCTGAATCCTGAGAACATTCGGCCAGGGGGTCCTGCAGGACTATCCCGATCCTTAGGCCGAGAGGAAGAGGAAGATGAGGAGGAAGAGCTAGAAGAGGGGACCATTGATGTGACAGAGTTTCTGTCTATGACCCAGCAAGACTCCCACAACCCACTCAGGGACTCAAGGGGGGGCTCCTTTGAAATGACAGATGATGACAGTGCTATCAGAGCTCTGACCCAGTTTCCACTTCCCAAGAACCTCCTGGCCAAAGTGATTCAGATTGCAACCTCCTCCTCCACAGCTAAGAATCTCATGCAGTTCCATACTGTGGGTACCAAGACCAAGCTGGCTACACTCACTCTGCTCTGGCCCTGTCCCATGACCTTTGTTGCCAAAGGGCGACGCAAAGCTGAGGCTGAGAATAAGGCAGCAGCCTTGGCTTGCAAGAAACTGAAGAGCCTTGGCCTTGTGGACAGGAACAATGAGCCGCTTACCCATGCCATGTACAACCTGGCCTCCCTGCGTGAGTTGGGTGAGACCCAGCGCCGGCCATGTACCATCCAGGTGCCTGAGCCCATCCTTCGCAAGATAGAGGCCTTCCTGAGTCATTACCCGGTGGACAGCTCATGGATTTCCCCAGAACTCCGACTGCAGAGTGATGACATCTTGCCCTTAGGCAAGGACTCAGGGCCCTTGAGTGACCCTATCACAGGCAAGCCATACATGCCCCTGTCAGAAGCAGAGGAGGTGCGCTTAAGCCAGAGCCTGCTAGAGCTGTGGCGGAGGAGAGGGCCGATCTGGCAGGAGGCCCCGCAGCTACCTGTAGACCCTCATCGGGACACTATCCTCAGTGCCATTGAACAACACCCAGTGGTAGTCATCTCTGGGGACACAGGCTGTGGGAAGACCACACGTATCCCTCAGCTGCTATTGGAGCGCTATGTGACTGAGGGTCGAGGTGCCCGCTGCAATGTGATCATCACACAACCTCGCCGGATCTCAGCTGTGTCTGTGGCACAGCGGGTCAGCCATGAACTGGGCCCCTCCTTGCGCCGGAATGTGGGCTTCCAGGTACGCTTGGAAAGTAAGCCCCCAGCCCGAGGTGGGGCGCTGCTCTTCTGCACTGTGGGTATCCTGCTTCGGAAGCTGCAGAGCAACCCCAGCCTGGAGGGTGTGAGCCATGTCATTGTGGATGAGGTCCATGAGCGGGATGTGAACACAGACTTCCTGCTGATTCTGCTCAAGGGCCTGCAGCGGCTCAACCCAGCTCTTCGGCTGGTGCTCATGAGTGCTACAGGAGATAATGAGCGCTTTTCCCGATACTTTGGGGGCTGCCCTGTTATCAAGGTACCTGGCTTCATGTATCCCGTCAAGGAACACTACCTGGAGGACATCTTGGCCAAGCTGGGTAAACATCAGTACCCACACCGGCATTGGCACCATGAGTCGGAAGATGAATGTGCACTTGATTTGGACCTTGTGACTGACCTGGTTCTGCATATCGATGCCCGTGGGGAACCAGGTGGGATCCTGTGCTTTCTACCTGGCTGGCAAGAAATCAAAGGAGTGCAACAACGGCTCCAGGAGGCCCTGGGCATGCATGAAAGCAAGTACCTCATCTTACCAGTGCACTCCAATATCCCCATGATGGACCAGAAGGCCATATTCCAACAGCCTCCACTTGGGGTACGCAAGATTGTATTGGCCACCAACATTGCTGAAACCTCCATCACAGTTAACGACATTGTACATGTCGTGGACAGCGGTCTGCACAAGGAGGAACGCTATGACCTGAAGACCAAGGTGTCCTGCCTGGAGACTGTGTGGGTGTCGAGAGCAAATGTCATTCAGCGCCGGGGCAGGGCAGGCCGCTGCCAGTCAGGTTTTGCCTACCACTTGTTCCCGAGGAGCCGGCTGGAGAAAATGGTTCCTTTCCAAGTGCCAGAGATCCTGCGCACACCTCTTGAGAACCTGGTGCTGCAAGCCAAAATCCATATGCCTGAGAAGACGGCAGTGGAGTTCCTCTCTAAGGCTGTGGACAGTCCAAATATCAAGGCAGTGGATGAGGCCGTGATCCTGCTCCAGGAGATTGGGGTGCTGGACCAGCGGGAGTATCTGACCACCTTGGGACAGCGCCTGGCCCACATCTCTACTGACCCCCGACTGGCCAAGGCCATAGTGTTGGCTGCCATCTTCCGTTGCCTGCACCCACTGCTGGTGGTTGTTTCCTGCCTTACCCGGGACCCCTTCAGCAGCAGTTTGCAGAACCGGGCAGAAGTAGACAAGGTGAAGGCATTGCTGAGCCATGACAGTGGCAGTGACCATTTGGCCTTCGTGCGGGCTGTGGCTGGCTGGGAGGAGGTACTGCGCTGGCAGGACCGTACCTCCAGGGAAAACTACCTGGAAGAAAACCTTCTGTATGCCCCCAGCTTGCGCTTCATCCACGGGCTCATCAAGCAGTTCTCAGAGAACATTTATGAGGCTTTCCTAGTGGGGAAGCCCTCTGACTGCACACTGCCCTCTGCTCAGTGCAATGAGTACAGCGAGGAAGAGGAGCTGGTGAAGGGTGTGCTGATGGCTGGCCTCTACCCCAACCTCATCCAGGTGAGACAAGGTAAGGTTACTCGGCAAGGCAAGTTCAAACCCAACAGTGTCACTTACAGGACCAAATCTGGCAACATCTTGCTGCATAAGTCAACCATTAACAGGGAGGCTACCCGGTTACGGAGCCGATGGCTGACATATTTCATGGCCGTCAAGTCCAATGGTAGCGTCTTTGTTCGAGATTCCTCCCAGGTGCACCCACTAGCTGTGTTGCTCCTAACAGATGGGGACGTGCACATCCGAGATGATGGGCGTCGGGCCACCATCTCATTGAGTGACAGCGACCTGCTTCGGCTGGAAGGTGATTCACGAACTGTGCGGTTGCTAAGGGAGTTTCGTCGAGCCCTAGGACGGATGGTGGAGCGGAGCCTCCGCAGCGAGTTAGCTGCACTTCCTCTTAGTGTGCAGCAAGAACACGGGCAGCTGCTTGCACTGCTGGCAGAGTTGCTTCGAGGACCTTGTGGCAGCTTTGATATGCGCAAGACAGCTGATGACTGA - ->human -ATGGAAAACGAGACAGTCAGTGAACTGAACCAAACACAGCTTCAGCCACGAGCAGTGGTGGCCTTAGAATACCAGGTGGTCACCATCTTACTTGTACTCATTATTTGTGGCCTGGGCATTGTAGGCAACATCATGGTAGTCCTGGTTGTCATGAGAACCAAGCACATGAGGACCCCCACAAACTGCTACCTGGTGAGCCTGGCAGTAGCTGATCTCATGGTCTTGGTGGCCGCAGGCCTCCCCAACATAACAGACAGTATCTACGGTTCCTGGGTCTATGGCTATGTTGGATGCCTCTGCATTACTTACCTCCAGTATTTGGGAATTAATGCATCCTCTTGTTCAATAACAGCCTTTACCATTGAGAGGTACATAGCAATCTGTCACCCCATCAAAGCCCAGTTTCTCTGCACATTTTCCAGAGCCAAAAAGATTATCATCTTTGTCTGGGCTTTCACATCTCTTTACTGTATGCTCTGGTTCTTCTTGCTGGATCTCAATATTAGCACCTACAAAGATGCTATTGTGATATCCTGTGGCTACAAGATCTCCAGGAATTACTACTCACCTATTTACCTAATGGACTTTGGTGTCTTTTATGTTGTGCCAATGATCCTGGCTACCGTCCTCTATGGATTCATAGCTAGAATCCTTTTCTTAAATCCCATTCCTTCAGATCCTAAAGAAAACTCTAAGACATGGAAAAATGATTCAACCCATCAGAACACAAATCTGAATGTAAATACCTCTAATAGATGTTTCAACAGCACAGTATCTTCAAGGAAGCAGGTCACCAAGATGCTGGCAGTGGTTGTAATTCTGTTTGCCCTTTTATGGATGCCCTACAGGACTCTAGTGGTTGTCAACTCATTTCTCTCCAGTCCTTTCCAAGAAAATTGGTTTTTGCTCTTTTGCAGAATTTGCATTTATCTCAACAGTGCCATCAACCCGGTGATTTACAATCTCATGTCCCAGAAATTCCGTGCAGCCTTCAGAAAGCTCTGCAACTGCAAGCAGAAGCCAACAGAGAAACCTGCTAACTACAGTGTGGCCCTAAATTACAGCGTCATCAAGGAGTCAGACCATTTCAGCACAGAGCTTGATGATATCACTGTCACTGACACTTACCTGTCTGCCACAAAAGTGTCTTTTGATGACACCTGCTTGGCTTCTGAGGTATCCTTTAGCCAAAGTTGA ->chimp -ATGGAAAACGAGACAGTCAGTGAACTGAACCAAACACAGCTTCAGCCACGAGCAGTGGTGGCCTTAGAATACCAGGTGGTCACCATCTTACTTGTGCTCATTATTTGTGGCCTGGGCATTGTAGGCAACATCATGGTAGTCCTGGTTGTCATGAGAACCAAGCACATGAGGACCCCCACAAACTGCTACCTGGTGAGCCTGGCAGTAGCTGATCTCATGGTCTTGGTGGCCGCAGGCCTCCCCAACATAACAGACAGTATCTACGGTTCCTGGGTCTATGGCTATGTTGGATGCCTCTGCATTACTTACCTCCAGTATTTGGGAATTAATGCATCCTCTTGTTCAATAACAGCCTTTACCATTGAGAGGTACATAGCAATCTGTCACCCCATCAAAGCCCAGTTTCTCT????ATTTTCCAGAGCCAAAAAGATTATCATTTTTGTTTGGGCTTTCACATCTCTTTACTGTATGCTCTGGTTCTTCTTGCTGGATCTCAATATTAGCACCTACAAAGATGCTATTGTGATATCCTGTGGCTACAAGATCTCCAGGAATTACTACTCACCTATTTACCTAATGGACTTTGGTGTCTTTTATGTTGTGCCAATGATCCTGGCTACCGTCCTCTATGGATTCATAGCTAGAATCCTTTTCTTAAATCCCATTCCTTCAGATCCTAAAGAAAACTCTAAGACATGGAAAAATGACTCAACCCATCAGAACACAAATTTGAATGTAAATACTTCTAATAGATGTTTCAACAGCACAGTATCTTCAAGGAAGCAGGTCACCAAGATGCTGGCAGTGGTTGTAATTCTGTTTGCCCTTTTATGGATGCCCTACAGGACTCTGGTGGTTGTCAACTCATTTCTCTCCAGTCCTTTCCAAGAAAATTGGTTTTTGCTCTTTTGCAGAATTTGCATTTATCTCAACAGTGCCATCAACCCGGTGGTTTACAATCTCATGTCCCAGAAATTCCGTGCAGCCTTCAGAAAGCTCTGCAACTGCAAGCAGAAGCCAACAGAGAAACCTGCTAACTACAGTGTGGCCCTAAATTACAGCGTCATCAAGGAGTCAGACCATTTCAGCACAGAGCTTGATGATATCACTGTCACTGACACTTACCTGTCTGCCACAAAAGTGTCTTTTGATGACACCTGCTTGGCTTCTGAGGTATCCTTTAGCCAAAGTTGA ->mouse -ATGGAGAATGATACTGTCAGTGAAATGAACCAAACCGAGCTCCAGCCACAAGCAGCTGTGGCCCTCGAGTACCAGGTGGTTACCATCTTACTTGTGGTCATTATTTGTGGACTGGGCATTGTGGGCAACATCATGGTAGTCCTGGTGGTCATGAGAACAAAGCACATGAGAACCCCTACAAACTGTTACCTGGTAAGTCTGGCTGTGGCAGATCTCATGGTTCTGGTGGCTGCAGGCCTCCCCAACATAACCGACAGTATCTATGGTTCCTGGGTCTATGGCTATGTTGGCTGCCTCTGCATTACATATCTCCAGTACCTAGGCATTAATGCATCTTCATGTTCAATAACGGCCTTTACCATTGAAAGGTACATAGCAATCTGTCACCCCATCAAAGCCCAGTTTCTCTGCACGTTTTCCAGAGCCAAAAAAATCATCATCTTTGTCTGGGCCTTCACATCCATTTACTGTATGCTCTGGTTCTTCCTGCTGGATCTCAACATCAGCACCTACAAAAACGCTGTTGTGGTTTCCTGTGGCTACAAGATCTCCAGGAACTACTACTCACCTATTTACCTAATGGACTTTGGTGTCTTTTATGTTGTGCCAATGATCCTGGCCACTGTGCTTTATGGATTTATAGCTAGAATCCTCTTCTTAAACCCCATTCCTTCAGACCCTAAAGAAAACTCTAAGATGTGGAAAAATGACTCAATCCATCAGAACAAGAATTTGAATTTAAATGCCACCAACAGATGCTTCAACAGCACTGTATCTTCCAGGAAGCAGGTCACCAAGATGCTCGCAGTGGTTGTAATTCTGTTTGCCCTTTTATGGATGCCCTACAGGACTCTTGTGGTTGTCAACTCATTTCTCTCCAGCCCTTTCCAGGAAAATTGGTTCTTGCTCTTTTGCAGAATTTGCATTTATCTCAACAGTGCCATCAACCCAGTGATTTACAACCTCATGTCTCAGAAATTTCGTGCAGCCTTCAGGAAGCTCTGCAATTGCAAGCAGAAGCCCACAGAAAAAGCTGCTAACTACAGTGTGGCCCTAAATTACAGTGTCATCAAGGAGTCAGACCGCTTCAGCACAGAGCTAGAAGATATCACCGTCACCGATACGTATGTGTCAACCACAAAAGTGTCCTTTGATGACACCTGCTTGGCCTCTGAGGTAACCTTTAGTCAGAGCTGA - ->human -ATGACTGAGTTCTGGCTTATATCTGCTCCTGGGGAGAAAACCTGTCAGCAAACATGGGAGAAATTGCATGCGGCAACTTCAAAGAACAATAATCTTGCTGTCACTTCCAAGTTCAATATTCCTGACTTAAAGGTTGGCACGTTGGATGTCTTGGTTGGCTTGTCAGATGAACTGGCTAAACTGGATGCATTTGTAGAAGGAGTGGTTAAGAAAGTAGCTCAATACATGGCTGATGTATTGGAAGATAGCAAAGACAAAGTTCAAGAGAATCTGTTGGCTAATGGAGTGGACTTGGTTACTTATATAACAAGGTTCCAGTGGGACATGGCCAAATATCCAATCAAGCAGTCCCTGAAAAATATTTCTGAAATAATTGCCAAGGGAGTAACTCAGATTGATAATGACCTGAAATCTCGAGCATCTGCATACAATAACCTGAAAGGAAATCTTCAGAATTTGGAACGAAAGAATGCAGGAAGTTTGCTAACTAGAAGTCTAGCAGAAATTGTGAAGAAGGATGACTTTGTTCTTGATTCAGAGTATCTCGTCACATTACTGGTAGTAGTTCCCAAGTTAAACCACAACGACTGGATTAAGCAGTATGAAACACTAGCCGAAATGGTAGTTCCAAGGTCTAGCAATGTTCTTTCAGAGGACCAAGACAGTTACCTGTGTAATGTCACCTTGTTTAGGAAGGCAGTTGATGACTTCAGACACAAAGCCAGAGAAAACAAATTCATTGTTCGTGACTTCCAGTATAATGAAGAGGAGATGAAAGCAGATAAAGAAGAAATGAACAGGCTTTCTACTGATAAGAAAAAACAATTTGGACCACTTGTACGGTGGCTGAAAGTGAATTTTAGTGAAGCATTTATTGCATGGATTCACGTGAAAGCATTACGGGTTTTCGTTGAGTCTGTTTTAAGGTATGGCTTGCCAGTGAACTTCCAAGCAATGCTACTTCAGCCCAATAAGAAAACTTTGAAGAAACTGAGAGAAGTATTACATGAATTGTATAAACATCTAGACAGCAGTGCAGCAGCTATTATTGATGCTCCTATGGATATTCCAGGTTTAAACCTGAGTCAACAAGAATACTACCCCTATGTGTACTACAAGATTGATTGCAACTTGCTGGAATTCAAGTGA ->chimp -ATGACTGAGTTCTGGCTTATATCTGCTCCTGGGGAGAAAACCTGTCAGCAAACATGGGAGAAATTGCATGCGGCAACTTCAAAGAACAATAATCTTGCTGTCACTTCCAAGTTCAATATTCCTGACTTAAAGGTTGGCACGTTGGATGTCTTGGTTGGCTTGTCAGATGAACTGGCTAAACTGGATGCATTTGTAGAAGGAGTGGTTAAGAAAGTAGCTCAATACATGGCTGATGTATTGGAAGATAGCAAAGACAAAGTTCAAGAGAATCTGTTGGCTAATGGAGTGGACTTGGTTACTTATATAACAAGGTTTCAGTGGGACATGGCCAAATATCCAATCAAGCAGTCCCTGAAAAATATTTCTGAAATAATTGCCAAGGGAGTAACTCAGATTGATAATGACCTGAAATCTCGAGCATCTGCATACAATAACCTGAAAGGAAATCTTCAGAATTTGGAACGAAAGAATGCAGGAAGTTTGCTAACTAGAAGTCTAGCAGAAATTGTGAAGAAGGATGACTTTGTTCTTGATTCAGAGTATCTCGTCACATTACTGGTAGTAGTTCCCAAGTTAAACCACAACGACTGGATTAAGCAGTATGAAACACTAGCCGAAATGGTAGTTCCAAGGTCTAGCAATGTTCTTTCAGAGGACCAAGACAGTTACCTGTGTAATGTCACCTTGTTTAGGAAGGCAGTTGATGACTTCAGACACAAAGCCAGAGAAAACAA??????????????????????????ATGAAGAGGAGATGAAAGCAGATAAAGAAGAAATGAACAGG???TCTACTGATAAGAAAAAACAATTTGGACCACTTGTACGGTGGCTGAAAGTGAATTTTAGTGAAGCATTTATTGCATGGATTCACGTGAAAGCATTACGGGTTTTCGTTGAGTCTGTTTTAAGGTATGGCTTGCCAGTGAACTTCCAAGCAAT?CTACTTCAGCCCAATAAGAAAACTTTGAAGAAACTGAGAGAAGTATTACATGAATTGTATAAACATCTAGACAGCAGTGCAGCAGCTATTATTGATGCTCCTATGGATATTCCAGGTTTAAACCTGAGTCAACAAGAATACTACCCCTATGTGTACTACAAGATTGATTGCAACTTGCTGGAATTCAAGTGA ->mouse -ATGACTGAGTTCTGGCTCATATCTGCTCCTGGGGAGAAAACCTGTCAGCAAACATGGGAGAAACTACATGCAGCGACCACCAAGAACAATAATCTTGCCGTCTCTTCCAAGTTCAACATTCCTGACCTAAAGGTTGGCACGTTGGATGTCTTGGTTGGCTTGTCGGATGAACTGGCTAAACTGGATGCATTTGTAGAAGGTGTGGTCAAGAAAGTGGCTCAGTACATGGCTGATGTGCTGGAGGACAGCAAAGATAAAGTTCAGGAGAACTTGCTGGCCAGCGGAGTTGACTTGGTTACTTACATAACAAGGTTCCAGTGGGATATGGCTAAATATCCAATCAAGCAGTCTCTGAAAAATATTTCTGAAATAATTGCCAAGGGAGTGACTCAGATCGATAATGACCTAAAGTCTCGGGCGTCTGCATACAATAACCTGAAAGGGAATCTTCAGAATTTAGAGCGAAAGAACGCGGGAAGTTTGCTAACGCGAAGCCTGGCGGAAATCGTGAAGAAAGATGACTTTGTTCTTGATTCGGAGTATCTTGTCACATTGCTGGTGGTAGTTCCCAAGCTGAACCACAATGACTGGATTAAGCAGTATGAAACGCTCGCAGAAATGGTAGTACCAAGGTCAAGCAATGTTCTTTCAGAGGACCAAGACAGTTATCTTTGTAACGTCACCTTGTTTAGAAAAGCAGTTGATGATTTCAGACACAAAGCCAGAGAAAACAAGTTCATAGTTCGTGACTTCCAGTATAACGAGGAGGAGATGAAAGCAGATAAAGAAGAAATGACCAGGCTGTCTACTGACAAGAAGAAGCAGTTTGGACCACTTGTGCGGTGGCTTAAAGTGAATTTCAGTGAGGCGTTTATTGCGTGGATTCATATAAAAGCATTACGGGTTTTTGTGGAGTCTGTTTTAAGGTATGGCTTGCCGGTGAACTTCCAAGCAATGCTCCTTCAGCCGAATAAGAAGTCAGTGAAGAAGCTAAGAGAAGTGCTGCACGAGTTGTACAAGCATCTGGACAGCAGTGCGGCTGCCATCATTGACGCTCCCATGGATATCCCTGGCCTAAACCTGAGTCAGCAGGAATACTACCCCTATGTGTATTACAAGATTGATTGCAACTTGCTGGAATTCAAGTAA - ->human -ATGCCTTCCAGCGGCAGAGCGCTGCTGGACTCGCCG---CTGGACAGCGGCTCCCTGACCTCCCTGGACTCTAGTGTCTTCTGCAGCGAGGGTGAAGGGGAGCCCTTGGCGCTCGGGGACTGCTTCACGGTCAACGTGGGCGGCAGCCGCTTCGTGCTCTCGCAGCAGGCGCTGTCCTGCTTCCCGCACACGCGCCTTGGCAAGCTGGCCGTGGTGGTGGCTTCCTACCGCCGCCCCGGGGCCCTGGCCGCCGTGCCCAGCCCTCTGGAGCTTTGCGACGATGCCAACCCCGTGGACAACGAGTACTTCTTCGACCGCAGCTCGCAGGCGTTCCGATATGTCCTGCACTACTACCGCACCGGCCGCCTGCATGTCATGGAGCAGCTGTGCGCGCTCTCCTTCCTGCAGGAGATCCAGTACTGGGGCATCGATGAGCTCAGCATCGATTCCTGCTGCAGGGACAG????????????????????????????????????????????????????????????????????????????????????????????????????CCTTGTCCCACTGTTCGCCAGAAGCTCTGGAATATCCTGGAGAAACCTGGATCTTCCACAGCTGCCCGTATCTTTGGCGTCATCTCCATTATCTTCGTGGTGGTGTCCATCATTAACATGGCCCTGATGTCAGCTGAGTTAAGCTGGCTGGACCTGCAGCTGCTGGAAATCCTGGAGTATGTGTGCATTAGCTGGTTCACCGGGGAGTTTGTCCTCCGCTTCCTGTGTGTGCGGGACAGGTGTCGCTTCCTAAGAAAGGTGCCAAACATCATAGACCTCCTTGCCATCTTGCCCTTCTACATCACTCTTCTGGTAGAGAGCCTAAGTGGGAGCCAGACCACGCAGGAGCTGGAGAACGTGGGGCGCATTGTCCAGGTGTTGAGGCTGCTCAGGGCTCTGCGCATGCTAAAGCTGGGCAGACATTCCACAGGATTACGCTCCCTTGGGATGACAATCACCCAGTGTTACGAAGAAGTCGGCCTACTGCTCCTATTTCTATCCGTGGGAATCTCTATATTTTCAACTGTAGAATACTTTGCTGAGCAAAGCATTCCTGACACAACCTTCACAAGTGTCCCTTGTGCATGGTGGTGGGCCACCACCTCTATGACTACTGTGGGATATGGGGACATTAGACCAGACACCACCACAGGCAAAATCGTGGCCTTCATGTGTATATTATCGGGAATTCTTGTCTTGGCCTTGCCTATTGCTATTATTAACGATCGCTTCTCTGCTTGCTACTTCACCTTGAAACTCAAGGAAGCAGCTGTTAGACAGCGTGAAGCCCTAAAGAAGCTTACCAAGAATATAGCCACTGACTCATATATCAGTGTTAACTTGAGAGATGTCTATGCCCGGAGTATCATGGAGATGCTGCGACTGAAAGGCAGAGAAAGAGCAAGTACTAGGAGCAGCGGGGGAGATGATTTCTGGTTTTGA ->chimp -ATGCCTTCCAGCGGCAGAGCGCTGCTGGACTCGCCG---CTGGACAGCGGCTCCCTGACCTCCCTGGACTCTAGTGTCTTCTGCAGCGAGGGTGAAGGGGAGCCCTTGGCGCTCGGGGACTGCTTCACGGTCAACGTGGGCGGCAGCCGCTTCGTGCTCTCGCAGCAGGCGCTGTCCTGCTTCCCGCACACGCGCCTTGGCAAGCTGGCCGTGGTGGTGGCTTCCTACCGCCGCCCCGGGGCCCTGGCCGCCGTGCCCAGCCCTCTGGAGCTTTGCGACGATGCCAACCCCGTGGACAACGAGTACTTCTTCGACCGCAGCTCGCAGGCGTTCCGATATGTCCTGCACTACTACCGCACCGGCCGCCTGCATGTCATGGAGCAGCTGTGCGCGCTCTCCTTCCTGCAGGAGATCCAGTACTGGGGCATCGATGAGCTCAGCATCGATTCCTGCTGCAGGGACAG???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CCTGGAG???CCTGGATCTTCCACAGCTGCCCGTATCTTTGGTGTCATCTCCATTGTCTTCGTGGTGGTGTCCATCATTAACATGGCCCTGATGTCAGCTGAGTTAAGCTGGCTGGACCTGCAGCTGCTGGAAATCCTGGAGTATGTGTGCATTAGCTGGTTCACCGGGGAGTTTGTCCTCCGCTTCCTGTGTGTGCGGGACAGGTGTCGCTTCCTAAGAAAGGTGCCAAACATCATAGACCTCCTTGCCATCTTGCCCTTCTACATCACTCTTCTGGTAGAGAGCCTAAGTGGGAGCCAGACCACGCAGGAGCTGGAGAACGTGGGGCGCATTGTCCAGGTGTTGAGGCTGCTCAGGGCTCTGCGCATGCTAAAGCTGGGCAGACATTCCACAGGATTACGCTCCCTTGGGATGACAATCACCCAGTGTTACGAAGAAGTCGGCCTACTGCTCCTATTTCTATCCGTGGGAATCTCTATATTTTCAACTGTAGAATATTTTGCTGAGCAAAGCATTCCTGACACAACCTTCACAAGTGTCCCTTGTGCATGGTGGTGGGCCACCACCTCTATGACTACTGTGGGATATGGGGACATTAGACCAGACACCACCACAGGCAAAATCGTGGCCTTCATGTGTATATTATCGGGAATTCTTGTCTTGGCCTTGCCTATTGCTATTATTAACGATCGCTTCTCTGCTTGCTACTTCACCTTGAAACTCAAGGAAGCAGCTGTTAGACAGCGTGAAGCCCTAAAGAAGCTTACCAAGAATATAGCCACTGACTCATATATCAGTGTTAACTTGAGAGATGTCTATGCCCGGAGTATCATGGAGATGCTGCGACTGAAAGGCAGAGAAAGAGCAAGTACTAGGAGCAGCGGGGGAGATGATTTCTGGTTTTGA ->mouse -CTGTCACCCCGCAACCGGCCGCTACTGGACTCGTCGTCGCTGGACAGCGGTTCTCTGACCTCACTGGACTCCAGTGTTTTCTGTAGCGAGGGCGAAGGGGAACCCTTGGCTCTGGGGGACTGCTTTACAGTCAACGTGGGCGGTAGCCGCTTCGTGCTCTCGCAGCAAGCTCTGTCCTGCTTCCCGCACACGCGCCTGGGCAAACTGGCCGTAGTGGTGGCCTCCTACCGCCGCCTGGGTGCCCTGGCTGCCGCCCCCAGCCCCCTGGAGCTTTGCGATGATGCGAATCCGGTGGACAACGAGTACTTCTTTGATCGCAGCTCTCAGGCGTTCCGTTATGTCCTGCACTACTATCGCACTGGTCGCCTGCATGTCATGGAGCAGCTCTGTGCGCTCTCCTTTCTTCAGGAGATCCAGTACTGGGGCATAGATGAACTCAGCATTGACTCCTGCTGCAGGGACAGCCTTGTCCCACTGTCCGACAAAAGCTCTGGGATATTCTGGAGAAACCTGGATCTTCCACAGCAGCCCGGATCTTTGGAGTAATCTCCATCATTTTTGTGGCA----------------------------------------------------------------------------------------------------GTGTCCATCGTCAACATGGCCCTGATGTCAGCTGAGCTTAGCTGGCTCAACCTACAGCTGCTGGAGATCTTGGAGTATGTGTGCATCAGCTGGTTCACCGGGGAGTTCGTTCTGCGCTTCCTATGTGTGAAAGACAGGTGCCACTTCCTGAGGAAGGTTCCAAACATCATAGACCTCCTTGCCATCTTGCCCTTCTATATAACTCTTCTGGTGGAAAGCCTGAGCGGCAGCCACACCACACAAGAGCTGGAAAATGTGGGACGTCTGGTCCAGGTCTTGAGGCTCCTCAGAGCTCTGCGCATGCTGAAACTGGGAAGGCATTCTACAGGATTGCGCTCACTTGGGATGACAATCACTCAGTGCTATGAAGAAGTTGGCCTACTGCTCCTGTTTCTATCTGTGGGGATTTCTATATTTTCAACAATAGAATACTTTGCAGAGCAAAGCATTCCTGATACAACCTTCACAAGTGTTCCTTGTGCATGGTGGTGGGCCACAACATCCATGACTACAGTAGGATATGGGGACATTAGACCAGACACCACCACAGGCAAAATCGTGGCCTTCATGTGTATTCTGTCAGGAATCCTTGTCTTGGCCTTGCCTATTGCCATTATTAATGATCGATTCTCTGCTTGCTACTTCACCTTGAAACTCAAGGAAGCAGCTGTGAGACAGCGTGAAGCTCTCAAGAAACTTACCAAGAATATAGCCACTGACTCATATATTAGTGTTAACTTGAGGGATGTCTATGCCCGGAGCATAATGGAGATGCTTCGATTAAAGGGCAGGGAGAGAGCAAGTACTAGAAGCAGTGGTGGAGATGATTTCTGGTTTTAA - ->human -AGGAAAAGAAGCCCATCTGTGTCCAGAGATCAGAATAGAAGATACGACCAAAGGGAAGAAAGAGAGGAATATTCACAGTATGCTACTTCGGATACCGCAATGCCTAGATCTCCATCAGATTATGCTGATAGGCGATCTCAACATGAACCTCAGTTTTATGAAGACTCTGATCATTTAAGTTATAGGGACTCCAACAGGAGAAGTCATAGGCATTCCAAAGAATATATTGTAGATGATGAGGATGTGGAAAGCAGAGATGAATACGAAAGGCAAAGGAGAGAGGAAGAGTACCAGTCACGCTACCGAAGTGATCCGAATTTGGCCCGTTATCCAGTAAAGCCACAACCCTATGAAGAACAAATGCGGATCCATGCTGAAGTGTCCCGAGCACGGCATGAGAGAAGGCATAGTGATGTTTCTTTGGCAAATGCTGATCTGGAAGATTCCAGGATTTCTATGCTAAGGATGGATCGACCATCAAGGCAAAGATCTATATCAGAACGTAGAGCTGCCATGGAAAATCAGCGATCTTATTCAATGGAAAGAACTCGAGAGGCTCAGGGACCAAGTTCTTATGCACAAAGGACCACAAACCATAGTCCTCCTACCCCCAGGAGGAGTCCACTACCCATAGATAGACCAGACTTGAGGCGTACTGACTCACTACGGAAACAGCACCACTTAGATCCTAGCTCTGCTGTAAGAAAAACAAAACGGGAAAAAATGGAAACAATGTTAAGGAATGATTCTCTCAGTTCAGACCAGTCAGAGTCAGTGAGACCTCCACCACCAAAGCCTCATAAATCAAAGAAAGGCGGTAAAATGCGCCAGATTTCGTTGAGCAGTTCAGAGGAGGAATTGGCTTCCACGCCTGAATATACAAGTTGTGATGATGTTGAGATTGAAAGTGAGAGTGTAAGTGAAAAAGGGGACAGTCAAAAGGGAAAAAGAAAAACTAGTGAGCAGGCAGTTTTGTCGGACTCTAACACCAGGTCTGAGAGACAAAAGGAAATGATGTACTTTGGTGGCCACTCTTTGGAAGAGGATTTGGAATGGTCTGAACCTCAGATTAAGGACTCTGGGGTAGATACGTGTAGTAGCACAACCCTTAACGAGGAGCATAGCCATAGTGATAAGCACCCTGTAACCTGGCAACCATCTAAAGATGGAGATCGTTTAATTGGTCGCATTTTATTAAATAAGCGTCTAAAAGATGGAAGTGTACCTCGAGATTCAGGAGCAATGCTTGGCTTGAAGGTTGTAGGAGGAAAGATGACTGAATCAGGTCGGCTTTGTGCATTTATTACTAAAGTAAAAAAAGGAAGTTTAGCTGATACTGTAGGACATCTTAGACCAGGTGATGAAGTATTAGAATGGAATGGAAGACTACTGCAAGGAGCCACATTTGAGGAAGTGTACAACATCATTCTAGAATCCAAACCTGAACCACAAGTAGAACTTGTAGTTTCAAGGCCTATTGG???????????????????????????????????????????????GTTCTAGCTCCTTTGAATCTCAAAAAATGGATCGTCCTTCTATTTCTGTTACCTCTCCCATGAGTCCTGGAATGTTGAGGGATGTCCCA????????????????????????ATAAAACTATGGTTTGACAAGGTTGGTCACCAATTAATAGTTACAATTTTGGGAGCAAAAGATCTCCCTTCCAGGGAAGATGGGAGGCCAAGGAATCCTTATGTTAAAATTTACTTTCTTCCAGACAGAAG????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATTTTAATTGAATTAGAAACAGCATTATTAGATGATGAGCCACATTGGTACAAACTTCAGACGCATGATGTCTCTTCATTGCCACTTCCCCACCCTTCTCCATATATGCCACGAAGACAGCTCCATGGAGAGAGCCCAACACGGAGGTTGCAAAGGTCAAAGAGAATAAGTGATAGTGAAGTCTCTGACTATGACTGTGATGATGGAATTGGTGTAGTATCAGATTATCGACATGATGGTCGAGATCTTCAAAGCTCAACATTATCAGTGCCAGAACAAGTAATGTCATCAAACCACTGTTCACCATCAGGGTCTCCTCATCGAGTAGATGTTATAGGAAGGACTAGATCATGGTCACCCAGTGTCCCTCCTCCACA???TCGGAATGTGGAACAGGGGCTTCGAGGGACCCGCACTATGACCGGACATTATAATACAATTAGCCGAATGGACAGACATCGTGTCATGGATGACCATTATTCTCCAGATAGAGACAGGGATTGTGAAGCAGCAGATAGACAGCCATATCACAGATCCAGATCAACAGAACAACGGCCTCTCCTTGAGCGGACCACCACCCGCTCCAGATCCACTGAACGTCCTGATACAAACCTCATGAGGTCGATGCCTTCATTAATGACTGGAAGATCTGCCCCTCCTTCACCTGCCTTATCGAGGTCTCATCCTCGTACTGGGTCTGTCCAGACAAGCCCATCAAGTACTCCAGTCGCAGGACGAAGGGGCCGACAGCTTCCACAGCTTCCACCAAAGGGAACGTTGGATAGAAAAGCAGGAGGTAAAAAACTAAGGAGCACTGTCCAAAGAAGTACAGAAACAGGCCTGGCCGTGGAAATGAGGAACTGGATGACTCGACAGGCAAGCCGAGAGTCTACAGATGGTAGCATGAACAGCTACAGCTCAGAAGGAAATCTGATTTTCCCTGGTGTTCGCTTGGCCTCTGATAGCCAGTTCAGTGATTTCCTGGATGGCCTTGGCCCTGCTCAGCTAGTGGGACGCCAGACTCTGGCAACACCTGCAATGGGTGACATTCAGGTAGGAATGATGGACAAAAAGGGACAGCTGGAGGTAGAAATCATCCGGGCCCGTGGCCTTGTTGTAAAACCAGGTTCCAAGACACTGCCAGCACCGTATGTAAAAGTGTATCTATTAGATAACGGAGTCTGCATAGCCAAAAAGAAAACAAAAGTGGCAAGAAAAACGCTGGAACCCCTTTACCAGCAGCTATTATCTTTCGAAGAGAGTCCACAAGGAAAAGTTTTACAGATCATCGTCTGGGGAGATTATGGCCGCATGGATCACAAATCTTTTATGGGAGTGGCCCAGATACTTTTAGATGAACTAGAGCTATCCAATATGGTGATCGGATGGTTCAAACTTTTCCCACCTTCCTCCCTAGTAGATCCAACCTTGGCCCCTCTGACAAGAAGAGCTTCCCAATCATCTCTGGAAAGTTCAACTGGACCTTCTTACTCTCGTTCATAG ->chimp -AGGAAAAGAAGCCCATCTGTGTCCAGAGATCAGAATAGAAGATACGACCAAAGGGAAGAAAGAGAGGAATATTCACAGTATGCTACTTCGGATACCGCAATGCCTAGATCTCCATCAGATTATGCTGATAGGCGATCTCAACATGAACCTCAGTTTTATGAAGACTCTGATCATTTAAGTTATAGGGACTCCAACAGGAGAAGTCATAGGCATTCCAAAGAATATATTGTAGATGATGAGGATGTGGAAAGCAGAGATGAATACGAAAGGCAAAGGAGAGAGGAAGAGTACCAGTCACGCTACCGAAGTGATCCGAATTTGGCCCGTTATCCAGTAAAGCCACAACCCTATGAAGAACAAATGCGGATCCATGCTGAAGTGTCCCGAGCACGGCATGAGAGAAGGC?TAGTGATGTTTCTTTGGCAAATGCTGATC??????????????????????????????????????????????????????????ATCAGAACGTAGA?CTGC???GGAAAATCA?C?A???TATTCA??GGAAAGA???????AGGCTCAGGGACCAA?TTCT???GCAC?AAG?AC???A?ACCATAGTCCTCCTACCCCCAGGAGGAGTCCACTACCCATAGATAGACCAGACTTGAGGCGTACTGACTCACTACGGAAACAGCACCACTTAGATCCTAGCTCTGCTGTAAGAAAAACAAAACGGGAAAAAATGGAAACGATGTTAAGGAATGATTCTCTCAGTTCAGACCAGTCAGAGTCAGTGAGACCTCCACCACCAAAGCCTCATAAATCAAAGAAAGGCGGTAAAATGC??????????????????????????????????????????????????????????????????????????????????????????????????????GGGACAGTCAAAAGGGAAAAAGAAAAAC?AGTGAGCAGGCAGTTTTGTCGGAC???AACACCAGG????AGAGACAAAAGGAAATGATGTACTTTG???GCCACTCTTTGGAAGAGGAT??GGAATGGTCTGAACCTCAGATTAAGGACTCTGGGGTAGATACGTGTAGTAGCACAACCC??AACGAGGAGCAT???????????????CACCCTGTAACCTGGCAACCATCTAAAGATGGAGATCGTTTAATTGGTCGCATTTTATTGAATAAGCGTCTAAAAGATGGAAGTGTACCTCGAGATTCAGGAGCAATGCTTGGCTTGAAGGTTGTAGGAGGAAAGATGACTGAATCAGGTCGGCTTTGTGCATTTATTACTAAAGTAAAAAAAGGAAGTTTAGCTGATACTGTAGGACATC?????????GTGATGAAGTATTAGAATGGAATGGAAGACTACTGCAAGGAGCCACATTTGAGGAAGTGTACAACATCATTCTAGAATCCAAACCTGAACCACAAGTAGAACTTGTAGTTTCAAGGCCTATTGG???????????????????????????????????????????????GTTCTAGCTCCTTTGAATCTCAAAAAATGGATCGTCCTTCTATTTCTGTTACCTCTCCCATGAGTCCTGGAATGTTGAGGGATGTCCCA????????????????????????ATAAAACTATGGTTTGACAAGGTTGGTCACCAATTAATAGTTACAATTTTGGGAGCAAAAGATCTCCCTTCCAGGGAAGATGGGAGGCCAAGGAATCCTTATGTTAAAATTTACTTTCTTCCAGACAGAAG????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATTTTAATTGAATTAGAAACAGCATTATTAGATGATGAGCCACATTGGTACAAACTTCAGACGCATGATGTCTCTTCATTGCCACTTCCCCACCCTTCTCCATATATGCCACGAAGACAGCTCCATGGAGAGAGCCCAACACGGAGGTTGCAAA????????????????????????????CTCTGACTATGACTGTGATGATGGAAT?GGTGTA???????ATTATCGACATGATGGTCGAGATCTTCAAAGCTCAACATTATCAGTGCCAGAACAAGTAATGTCATCAAACCACTGTTCACCATCAGGGTCTCCTCATCGAGTAGA????ATAGGAAGGACTAGATCATGGTCACCCAGT?????????????????TCGGAATGTGGAACAGGGGCTTCGAGGGACCCG?ACTACGACCGGACATTATAATACAATTAGCCGAATGGATAGACATCGTGTCATGGATGACCATTATTCTCCAGATAGAGACAG????????????????????GACAGCCATATCA????TCCAGATCAACAGAACAACG???TCTTCTTG???GGACCACCACCCGCTCC???TCCACTGA?CGTCCTGATACAAACCTCA?????????????????????????????????????????????????????????????GTCTCATCCTCGTACTGGGTCTGTCCAGACAAGCCCATCAAGTACTCCAGTGGCAGGACGAAGGGGCCGACAGCTTCCACAGCTTCCACCAAAGGGAACGTTGGATAGAAAAGCAGGAGGTAAAAAACTAAGGAGCACTGTCCAAAGAAGTACAGAAACAGGCCTGGCCGTGGAAATGAGGAACTGGATGACTCGACAGGCAAGCCGAGAGTCTACAGATGGTAGCATGAACAGCTACAGCTCAGAAGGAAA????ATTTTCCCTGGTGTTCGCTTGGCCTCTGATAGCCAGTTCAGTGATTTCCTGGATGGCCTTGGCCCTGCTCAGCTAGTGGGACGCCAGACTCTGGCAACACCTGCAATGG??????????????????????????????????????????????????????????????????????????????????????????????????????CACCGTATGTAAAAGTGTATCTATTAGATAACGGAGTCTGCATAGCCAAAAAGAAAACAAAAGTGGCAAGAAAAACGCTGGAACCCCTTTACCAGCAGCTATTATCTTTCGAAGAGAGTCCACAAGGAAAAGTTTTACAG??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? ->mouse -AGAAAACGAAGTCCATCAGTGTCCAGGGATCAAAATCGAAGATACGAGCAAAGTGAAGAAAGAGAGGACTACTCACAGTATGTTCCTTCAGATGGTACAATGCCAAGATCTCCTTCGGATTATGCTGATAGACGATCTCAGCGTGAGCCTCAATTTTATGAAGAACCTGGTCATTTAAATTACAGGGATTCTAACAGGAGAGGCCATAGACATTCCAAAGAGTATATTGTGGATGATGAAGATGTGGAGAGCAGAGATGAATATGAAAGACAAAGGAGAGAGGAGGAATACCAGGCACGCTACAGAAGTGATCCAAATCTGGCCCGGTATCCCGTAAAGCCACAACCCTACGAAGAACAAATGCGCATCCACGCTGAGGTGTCCAGGGCACGACATGAGAGAAGGCACAGTGATGTTTCTTTGGCAAACGCTGAACTAGAAGATTCCAGGATTTCTCTGCTAAGGATGGATAGACCATCAAGGCAAAGATCTGTATCTGAACGTAGAGCTGCAATGGAAAACCAACGATCGTATTCAATGGAAAGAACTCGAGAGGCTCAGGGACAAAGTTCTTATCCACAAAGGACCTCAAATCATAGTCCTCCCACCCCTCGGCGGAGCCCTATACCGCTTGATAGACCAGACATGAGGCGCGCTGACTCCCTACGGAAACAGCACCACTTAGATCCCAGCTCTGCTGTGAGGAAAACGAAGCGAGAAAAAATGGAAACCATGTTAAGGAATGATTCTTTGAGTTCAGACCAGTCCGAGTCAGTGAGGCCGCCCCCACCAAGGCCTCATAAATCCAAGAAAGGAGGTAAAATGCGCCAGGTTTCACTGAGCAGCTCGGAGGAGGAGCTGGCATCCACACCTGAGTATACAAGCTGTGATGATGTGGAGCTGGAAAGCGAGAGTGTGAGTGAGAAAGGGGACAGTCAAAAGGGAAAAAGAAAAACTAGTGAGCAGGGAGTTTTGTCGGATTCTAACACCAGGTCTGAGAGACAAAAGAAAAGGATGTACTATGGTGGCCACTCTTTGGAAGAGGATTTGGAATGGTCTGAGCCTCAGATTAAGGACTCTGGGGTAGATACCTGTAGTAGCACAACCCTTAACGAGGAGCATAGCCATAGTGATAAGCACCCTGTGACCTGGCAGCCATCCAAAGATGGAGATCGCCTAATTGGTCGTATTTTATTAAATAAGCGTTTAAAAGATGGGAGTGTACCTCGAGACTCAGGAGCAATGCTGGGCTTAAAGGTTGTAGGAGGAAAGATGACTGAATCAGGTCGACTTTGTGCATTTATTACCAAAGTAAAAAAAGGAAGTTTAGCTGATACTGTAGGACATCTTAGACCAGGTGATGAAGTCTTGGAATGGAATGGGAGGCTATTGCAAGGAGCCACATTTGAGGAAGTTTACAACATTATTCTAGAATCCAAACCTGAACCACAAGTTGAGCTTGTTGTTTCAAGGCCAATTGG???????????????????????????????????????????????GTTCTAGCTCATTTGAATCTCAAAAAATGGACCGTCCTTCTATATCCGTTACCTCACCCATGAGTCCTGG------------------------CATGCTGAGGGATGTCCCGATAAAACTATGGTTTGACAAGGTTGGTCACCAGTTGATAGTTACAATTTTGGGAGCAAAGGATCTCCCTTCCAGGGAAGATGGGAGGCCAAGGAATCCTTATGTTAAGATTTACTTCCTTCCAGATAGAAG????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATTTTAATTGAATTGGAAACAGCTCTGCTAGATGATGAGCCGCACTGGTATAAGCTGCAGACCCATGATGTCTCCTCATTGCCACTCCCTCGCCCTTCCCCATATCTGCCCCGGAGGCAGCTCCATGGAGAGAGCCCAACGCGCAGGCTGCAAAGGTCGAAGAGAATAAGTGACAGTGAAGTGTCTGACTACGACTGCGAGGATGGCGTGGGAGTAGTGTCAGATTATCGACACAATGGCCGCGATCTTCAAAGCTCCACGTTGTCGGTGCCAGAACAAGTCATGTCATCAAATCATTGCTCACCATCAGGGTCTCCTCATCGAGTAGATGTTATAGGAAGGACAAGGTCATGGTCGCCTAGTGCCCCTCCTCC---TCATAGGAATGTGGAACAGGGGCACCGAGGGACACGTGCTA---CTGGCCATTACAACACAATTAGCCGAATGGATAGACACCGTGTCATGGATGACCACTACTCTTCAGATAGAGACAGGGATTGTGAAGCAGCAGATAGACAGCCATATCACAGATCCAGATCAACAGAACAACGGCCTCTCCTAGAGCGGACCACCACCCGCTCCAGATCCTCTGAACGTCCTGATACAAACCTCATGAGGTCGATGCCTTCATTAATGACTGGAAGATCTGCCCCTCCTTCACCTGCCTTATCGAGGTCTCACCCTCGTACCGGGTCTGTCCAGACAAGCCCATCAAGTACTCCGGGAACAGGACGAAGGGGCCGACAGCTTCCACAGCTTCCACCAAAGGGAACATTGGAGAGAAAAGGAGGAGGTAAAAAGCTACGGAGCACTGTTCAGAGAAGCACGGAGACCGGGCTAGCAGTGGAGATGAGGAACTGGATGACCCGCCAGGCCAGCCGGGAATCCACAGATGGCAGCATGAACAGCTATAGCTCGGAAGGAAATCTGATCTTCCCTGGGGTCCGCCTGGCCTCTGACAGCCAGTTCAGTGATTTCCTGGATGGCCTGGGCCCTGCTCAGCTAGTGGGACGCCAGACCCTGGCTACTCCTGCAATGGGTGACATTCAGGTGGGAATGATGGATAAAAAGGGACAGCTGGAGGTAGAAATCATCCGGGCGCGCGGCCTTGTGGTAAAACCAGGTTCCAAGACACTGCCAGCACCGTATGTCAAGGTGTATCTGTTAGACAACGGAGTCTGCATAGCCAAAAAGAAAACCAAGGTGGCGAGAAAGACCCTGGAGCCCCTGTACCAGCAGCTCTTGTCCTTCGAGGAGAGCCCCCAGGGGAGGGTGTTACAGATCATTGTCTGGGGAGATTATGGTCGTATGGATCACAAATCCTTTATGGGAGTGGCCCAGATACTCTTAGATGAACTGGAACTATCCAACATGGTGATTGGATGGTTCAAACTCTTCCCTCCTTCCTCCCTAGTAGATCCAACCTTGGCACCTCTGACAAGAAGAGCTTCCCAATCGTCTCTGGAAAGTTCTACCGGACCTTCTTACTCTCGTTCATAG - ->human -???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GGCACCTTCTCTCTGATTATTGAAGCTCTCCACACAGATTCTCCTGATGACCTCGCAACAGAAAACCCAGAAAGACTCATCAGCCGCCTGGCCACCCAGAGGCACCTGACGGTGGGCGAGGAGTGGTCCCAGGACCTGCACAGCAGCGGCCGCACGGACCTCAAGTACTCCTACCGCTTCGTGTGTGACGAACACTACTACGGAGAGGGCTGCTCCGTTTTCTGCCGTCCCCGGGACGATGCCTTCGGCCACTTCACCTGTGGGGAGCGTGGGGAGAAAGTGTGCAACCCTGGCTGGAAAGGGCCCTACTGCACAGAGCCGATCTGCCTGCCTGGATGTGATGAGCAGCATGGATTTTGTGACAAACCAGGGGAATGCAAGTGCAGAGTGGGCTGGCAGGGCCGGTACTGTGACGAGTGTATCCGCTATCCAGGCTGTCTCCATGGCACCTGCCAGCAGCCCTGGCAGTGCAACTGCCAGGAAGGCTGGGGGGGCCTTTTCTGCAACCAGGACCTGAACTACTGCACACACCATAAGCCCTGCAAGAATGGAGCCACCTGCACCAACACGGGCCAGGGGAGCTACACTTGCTCTTGCCGGCCTGGGTACACAGGTGCCACCTGCGAGCTGGGGATTGACGAGTGTGACCCCAGCCCTTGTAAGAACGGAGGGAGCTGCACGGATCTCGAGAACAGCTACTCCTGTACCTGCCCACCCGGCTTCTACGGCAAAATCTGTGAATTGAGTGCCATGACCTGTGCGGACGGCCCTTGCTTTAACGGGGGTCGGTGCTCAGACAGCCCCGATGGAGGGTACAGCTGCCGCTGCCCCGTGGGCTACTCCGGCTTCAACTGTGAGAAGAAAATTGACTACTGCAGCTCTTCACCCTGTTCTAATGGTGCCAAGTGTGTGGACCTCGGTGATGCCTACCTGTGCCGCTGCCAGGCCGGCTTCTCGGGGAGGCACTGTGACGACAACGTGGACGACTGCGCCTCCTCCCCGTGCGCCAACGGGGGCACCTGCCGGGATGGCGTGAACGACTTCTCCTGCACCTGCCCGCCTGGCTACACGGGCAGGAACTGCAGTGCCCCCGTCAGCAGGTGCGAGCACGCACCCTGCCACAATGGGGCCACCTGCCACGAGAGGGGCCACCGCTATGTGTGCGAGTGTGCCCGAGGCTACGGGGGTCCCAACTGCCAGTTCCTGCTCCCCGAGCTGCCCCCGGGCCCAGCGGTGGTGGACCTCACTGAGAAGC---TAGAGGGCCAGGGCGGGCCATTCCCCTGGGTGGCCGTGTGCGCCGGGGTCATCCTTGTCCTCATGCTGCTGCTGGGCTGTGCCGCTGTGGTGGTCTGCGTCCGGCTGAGGCTGCAGAAGCACCGGCCCCCAGCCGACCCCTGCCGGGGGGAGACGGAGACCATGAACAACCTGGCCAACTGCCAGCGTGAGAAGGACATCTCAGTCAGCATCATCGGGGCCACGCAGATCAAGAACACCAACAAGAAGGCGGACTTCCACGGGGACCACAGCGCCGACAAGAATGGCTTCAAGGCCCGCTACCCAGCGGTGGACTATAACCTCGTGCAGGACCTCAAGGGTGACGACACCGCCGTCAGGGACGCGCACAGCAAGCGTGACACCAAGTGCCAGCCCCAGGGCTCCTCAGGGGAGGAGAAGGGGACCCCGACCACACTCAGGGGTGGAGAAGCATCTGAAAGAAAAAGGCCGGACTCGGGCTGTTCAACTTCAAAAGACACCAAGTACCAGTCGGTGTACGTCATATCCGAGGAGAAGGATGAGTGCGTCATAGCAACTGAG?????? ->chimp -???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GGCACCTTCTCTCTGATTATTGAAGCTCTCCACACAGATTCTCCTGATGACCTCGCAACAGAAAACCCAGAAAGACTCATCAGCCGCCTGGCCACCCAGAGGCA?CTGACGGTGGGCGAGGAGTGGTCCCAGGACCTGCACAGCAGCGGCCGCACGGACCTCAAGTACTCCTACCGCTTCGTGTGTGACGAACACTACTACGGAGAGGGCTGCTCCGTTTTCTGCCGTCCCCGGGACGATGCCTTCGGCCACTTCACCTGTGGGGAGCGTGGGGAGAAAGTGTGCAACCCTGGCTGGAAAGGGCCCTACTGCACAGAGCCGATCTGCCTGCCTGGATGTGATGAGCAGCATGGATTTTGTGACAAACCAGGGGAATGCAA???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ACCTGAACTACTGCACACACCATAAGCCCTGCA????TGGGGCCACCTGCACCAACAC??G??A???GAGCTACACTTGCTCTTGCCGGCCTGGGTACAC??????????????????????????????????????????????????????????????????????GATCTCGAGAACAGCTACTCCTGTACCTGCCCACCCGGCTTCTACGGCAAAATCTGTGAATTGAGTGCCATGACCTGTGCGGACGGCCCTTGCTTTAACGGGGGCCGGTGCTCAGACAGCCCCGATGGAGGGTACAGCTGCCGCTGCCCCGTGGGCTACTCCGGCTTCAACTGTGAGAAGAAAATTGACTACTGCAGCTCTTCACCCTGTTCTAATGGTGCCAAGTGTGTGGA??TCGGTGATGCCTACCTGTGCCGCTGCCAGGCCGG???????GGGAGGCACTGTGACGACAACGTGGATG???GCGCCTCCTCCCCGTGCGCCAACGGGGGCACCTGCCGGGATGGCGTGAACGACT?????TGCACCTGCCCGCCCGGCTACACGGGCAGGAACTGCAGTGCCCCCGTCAGCAGGTGCGAGCACGCACCCTGCCACAATGGGGCCACCTGCCACGAGAGGGGCCACCGCTATGTGTGCGAGTGTGCCCGAGGCTACGGGGGTCCCAACTGCCAGTTCCTGCTCCCCGAGCTGCCCCCGGGCCCAGCGGTGGTGGACCTCACTGAGAAGC---TAGAGGGCCAGGGCGGGCCATTCCCCTGGGTGGCCGTGTGCGCCGGGGTCATCCTTGTCCTCATGCTGCTGCTGGGCTGTGCCGCTGTGGTGGTCTGCGTCCGGCTGAGGCTGCAGAAGCACCGGCCCCCAGCCGACCCCTGCCGGGGGGAGACGGAGACCATGAACAACCTGGCCAACTGCCAGCGTGAGAAGGACATCTCAGTCAGCATCATCGGGGCCACGCAGATCAAGAACACCAACAAGAAGGCGGACTTCCACGGGGACCACAGCGCCGACAAGAATGGCTTCAAGGCCCGCTACCCGGCGGTGGACTATAACCTCGTGCAGGACCTCAAGGGTGACGACACCGCCGTCAGGGACGCGCACAGCAAGCGTGACACCAAGTGCCAGCCCCAGGGCTCCTCAGGGGAGGAGAAGGGGACCCCAACCACACTCAGGGGTGGAGAAGCATCTGAAAGAAAAAGGCCGGACTCGGGCTGTTCGACTTCAAAAGACACCAAGTACCAGTCGGTGTACGTCATATCCGAGGAGAAGGATGAGTGCGTCATAGCAACTGAG?????? ->mouse -???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GGTACCTTCTCTCTGATCATTGAAGCCCTCCATACAGACTCTCCCGATGACCTCGCAACAGAAAACCCAGAAAGACTCATCAGCCGCCTGACCACACAGAGGCACCTCACTGTGGGAGAAGAATGGTCTCAGGACCTTCACAGTAGCGGCCGCACAGACCTCCGGTACTCTTACCGGTTTGTGTGTGACGAGCACTACTACGGAGAAGGTTGCTCTGTGTTCTGCCGACCTCGGGATGACGCCTTTGGCCACTTCACCTGCGGGGACAGAGGGGAGAAGATGTGCGACCCTGGCTGGAAAGGCCAGTACTGCACTGACCCAATCTGTCTGCCAGGGTGTGATGACCAACATGGATACTGTGACAAACCAGGGGAGTGCAAGTGCAGAGTTGGCTGGCAGGGCCGCTACTGCGATGAGTGCATCCGATACCCAGGTTGTCTCCATGGCACCTGCCAGCAACCCTGGCAGTGTAACTGCCAGGAAGGCTGGGGGGGCCTTTTCTGCAACCAAGACCTGAACTACTGTACTCACCATAAGCCGTGCAGGAATGGAGCCACCTGCACCAACACGGGCCAGGGGAGCTACACATGTTCCTGCCGACCTGGGTATACAGGTGCCAACTGTGAGCTGGAAGTAGATGAGTGTGCTCCTAGCCCCTGCAAGAACGGAGCGAGCTGCACGGACCTTGAGGACAGCTTCTCTTGCACCTGCCCTCCCGGCTTCTATGGCAAGGTCTGTGAGCTGAGCGCCATGACCTGTGCAGATGGCCCTTGCTTCAATGGAGGACGATGTTCAGATAACCCTGACGGAGGCTACACCTGCCATTGCCCCTTGGGCTTCTCTGGCTTCAACTGTGAGAAGAAGATGGATCTCTGCGGCTCTTCCCCTTGTTCTAACGGTGCCAAGTGTGTGGACCTCGGCAACTCTTACCTGTGCCGGTGCCAGGCTGGCTTCTCCGGGAGGTACTGCGAGGACAATGTGGATGACTGTGCCTCCTCCCCGTGTGCAAATGGGGGCACCTGCCGGGACAGTGTGAACGACTTCTCCTGTACCTGCCCACCTGGCTACACGGGCAAGAACTGCAGCGCCCCTGTCAGCAGGTGTGAGCATGCACCCTGCCATAATGGGGCCACCTGCCACCAGAGGGGCCAGCGCTACATGTGTGAGTGCGCCCAGGGCTATGGCGGCCCCAACTGCCAGTTTCTGCTCCCTGAGCCACCACCAGGGCCCATGGTGGTGGACCTCAGTGAGAGGCATATGGAGAGCCAGGGCGGGCCCTTCCCCTGGGTGGCCGTGTGTGCCGGGGTGGTGCTTGTCCTCCTGCTGCTGCTGGGCTGTGCTGCTGTGGTGGTCTGCGTCCGGCTGAAGCTACAGAAACACCAGCCTCCACCTGAACCCTGTGGGGGAGAGACAGAAACCATGAACAACCTAGCCAATTGCCAGCGCGAGAAGGACGTTTCTGTTAGCATCATTGGGGCTACCCAGATCAAGAACACCAACAAGAAGGCGGACTTTCACGGGGACCATGGAGCCGAGAAGAGCAGCTTTAAGGTCCGATACCCCACTGTGGACTATAACCTCGTTCGAGACCTCAAGGGAGATGAAGCCACGGTCAGGGATACACACAGCAAACGTGACACCAAGTGCCAGTCACAGAGCTCTGCAGGAGAAGAGAAGATCGCCCCAAC---ACTTAGGGGTGGGGAGATTCCTGACAGAAAAAGGCCAGAGTCTGTCTACTCTACTTCAAAGGACACCAAGTACCAGTCGGTGTATGTTCTGTCTGCAGAAAAGGATGAGTGTGTTATAGCGACTGAG?????? - ->human -ATGGTCTGGAGGCTGGTCCTGCTGGCTCTGTGGGTGTGGCCCAGCACGCAAGCTGGTCACCAGGACAAAGACACGACCTTCGACCTTTTCAGTATCAGCAACATCAACCGCAAGACCATTGGCGCCAAGCAGTTCCGCGGGCCCGACCCCGGCGTGCCGGCTTACCGCTTCGTGCGCTTTGACTACATCCCACCGGTGAACGCAGATGACCTCAGCAAGATCACCAAGATCATGCGGCAGAAGGAGGGCTTCTTCCTCACGGCCCAGCTCAAGCAGGACGGCAAGTCCAGGGGCACGCTGTTGGCTCTGGAGGGCCCCGGTCTCTCCCAGAGGCAGTTCGAGATCGTCTCCAACGGCCCCGCGGACACGCTGGATCTCACCTACTGGATTGACGGCACCCGGCATGTGGTCTCCCTGGAGGACGTCGGCCTGGCTGACTCGCAGTGGAAGAACGTCACCGTGCAGGTGGCTGGCGAGACCTACAGCTTGCACGTGGGCTGCGACCTCATAGACAGCTTCGCTCTGGACGAGCCCTTCTACGAGCACCTGCAGGCGGAAAAGAGCCGGATGTACGTGGCCAAAGGCTCTGCCAGAGAGAGTCACTTCAGGGGTTTGCTTCAGAACGTCCACCTAGTGTTTGAAAACTCTGTGGAAGATATTCTAAGCAAGAAGGGTTGCCAGCAAGGCCAGGGAGCTGAGATCAACGCCATCAGTGAGAACACAGAGACGCTGCGCCTGGGTCCGCATGTCACCACCGAGTACGTGGGCCCCAGCTCGGAGAGGAGGCCCGAGGTGTGCGAACGCTCGTGCGAGGAGCTGGGAAACATGGTCCAGGAGCTCTCGGGGCTCCACGTCCTCGTGAACCAGCTCAGCGAGAACCTCAAGAGAGTGTCGAATGATAACCAGTTTCTCTGGGAGCTCATTGGTGGCCCTCCTAAGACAAGGAACATGTCAGCTTGCTGGCAGGATGGCCGGTTCTTTGCGGAAAATGAAACGTGGGTGGTGGACAGCTGCACCACGTGTACCTGCAAGAAATTTAAAACCATTTGCCACCAAATCACCTGCCCGCCTGCAACCTGCGCCAGTCCATCCTTTGTGGAAGGCGAATGCTGCCCTTCCTGCCTCCACTCGGTGGACGGTGAGGAGGGCTGGTCTCCGTGGGCAGAGTGGACCCAGTGCTCCGTGACGTGTGGCTCTGGGACCCAGCAGAGAGGCCGGTCCTGTGACGTCACCAGCAACACCTGCTTGGGGCCCTCCATCCAGACACGGGCTTGCAGTCTGAGCAAGTGTGACACCCGCATCCGGCAGGACGGCGGCTGGAGCCACTGGTCACCTTGGTCTTCATGCTCTGTGACCTGTGGAGTTGGCAATATCACACGCATCCGTCTCTGCAACTCCCCAGTGCCCCAGATGGGGGGCAAGAATTGCAAAGGGAGTGGCCGGGAGACCAAAGCCTGCCAGGGCGCCCCATGCCCAATCGATGGCCGCTGGAGCCCCTGGTCCCCGTGGTCGGCCTGCACTGTCACCTGTGCCGGTGGGATCCGGGAGCGCACCCGGGTCTGCAACAGCCCTGAGCCTCAGTACGGAGGGAAGGCCTGCGTGGGGGATGTGCAGGAGCGTCAGATGTGCAACAAGAGGAGCTGCCCCGTGGATGGCTGTTTATCCAACCCCTGCTTCCCGGGAGCCCAGTGCAGCAGCTTCCCCGATGGGTCCTGGTCATGCGGCTCCTGCCCTGTGGGCTTCTTGGGCAATGGCACCCACTGTGAGGACCTGGACGAGTGTGCCCTGGTCCCCGACATCTGCTTCTCCACCAGCAAGGTGCCTCGCTGTGTCAACACTCAGCCTGGCTTCCACTGCCTGCCCTGCCCGCCCCGATACAGAGGGAACCAGCCCGTCGGGGTCGGCCTGGAAGCAGCCAAGACGGAAAAGCAAGTGTGTGAGCCCGAAAACCCATGCAAGGACAAGACACACAACTGCCACAAGCACGCGGAGTGCATCTACCTGGGCCACTTCAGCGACCCCATGTACAAGTGCGAGTGCCAGACAGGCTACGCGGGCGACGGGCTCATCTGCGGGGAGGACTCGGACCTGGACGGCTGGCCCAACCTCAATCTGGTCTGCGCCACCAACGCCACCTACCACTGCATCAAGGATAACTGCCCCCATCTGCCAAATTCTGGGCAGGAAGACTTTGACAAGGACGGGATTGGCGATGCCTGTGATGATGACGATGACAATGACGGTGTGACCGATGAGAAGGACAACTGCCAGCTCCTCTTCAATCCCCGCCAGGCTGACTATGACAAGGATGAGGTTGGGGACCGCTGTGACAACTGCCCTTACGTGCACAACCCTGCCCAGATCGACACAGACAACAATGGAGAGGGTGACGCCTGCTCCGTGGACATTGATGGGGACGATGTCTTCAATGAACGAGACAATTGTCCCTACGTCTACAACACTGACCAGAGGGACACGGATGGTGACGGTGTGGGGGATCACTGTGACAACTGCCCCCTGGTGCACAACCCTGACCAGACCGACGTGGACAATGACCTTGTTGGGGACCAGTGTGACAACAACGAGGACATAGATGACGACGGCCACCAGAACAACCAGGACAACTGCCCCTACATCTCCAACGCCAACCAGGCTGACCATGACAGAGACGGCCAGGGCGACGCCTGTGACCCTGATGATGACAACGATGGCGTCCCCGATGACAGGGACAACTGCCGGCTTGTGTTCAACCCAGACCAGGAGGACTTGGACGGTGATGGACGGGGTGATATTTGTAAAGATGATTTTGACAATGACAACATCCCAGATATTGATGATGTGTGTCCTGAAAACAATGCCATCAGTGAGACAGACTTCAGGAACTTCCAGATGGTCCCCTTGGATCCCAAAGGGACCACCCAAATTGATCCCAACTGGGTCATTCGCCATCAAGGCAAGGAGCTGGTTCAGACAGCCAACTCGGACCCCGGCATCGCTGTAGGTTTTGACGAGTTTGGGTCTGTGGACTTCAGTGGCACATTCTACGTAAACACTGACCGGGACGACGACTATGCCGGCTTCGTCTTTGGTTACCAGTCAAGCAGCCGCTTCTATGTGGTGATGTGGAAGCAGGTGACGCAGACCTACTGGGAGGACCAGCCCACGCGGGCCTATGGCTACTCCGGCGTGTCCCTCAAGGTGGTGAACTCCACCACGGGGACGGGCGAGCACCTGAGGAACGCGCTGTGGCACACGGGGAACACGCCGGGGCAGGTGCGAACCTTATGGCACGACCCCAGGAACATTGGCTGGAAGGACTACACGGCCTATAGGTGGCACCTGACTCACAGGCCCAAGACTGGCTACATCAG???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? ->chimp -ATGGTCTGGAGGCTGGTCCTGCTGGCTCTGTGGGTGTGGCCCAGCACGCAAG??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GATCACCAAGATCATGCGGCAGAAGGAGGGCTTCTTCCTCACGGCCCAGCTCAAGCAGGACGGCAAGTCCAGGGGCACGCTGTTGGCTCTGGAGGGCCCCGGTCTCTCCCAGAGGCAGTTCGAGATCGTCTCCAATGGCCCCGCGGACACGCTGGATCTCACCTACTGGATTGACGGCACCCGGCACGTGGTCTCCCTGGAGGACGTCGGCCTGGCTGACTCGCAGTGGAAGAACGTCACCGTGCAGGTGGCTGGCGAGACCTACAGCTTGCACGTGGGCTGCGACCTCATAGACAGCTTCGCTCTGGACGAGCCCTTCTACGAGCACCTGCAGGCGGAAAAGAGCCGGATGTACGTGGCCAAAGGCTCTGCCAGAGAGAGTCACTTCAGGGGTTTGCTTCAGAACGTCCACCTAGTGTTTGAAAACTCTCTGGAAGACATTCTAAGCAAGAAGGGTTGCCAGCAAGGCC???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TCGAATGATAACCAGTTTCTCTGGGAGCTCATCGGTGGCCCTCCTAAGACAAGGAACATGTCAGCTTGCTGGCAGGATGGCCGGTTCTTTGCGGAAAATGAAACGTGGGTGGTGGACAGCTGCACCTCGTGTACCTGCAAGAAATTTAAAACCATTTGCCACCAAATCACCTGCCCGCCTGCAACCTGCGCCAGTCCGTCCTTTGTGGAAG???AATGCT???CTTCCTGCCTCCACTCGGTGGACGGTGAGGAGGGCTGGTCTCCGTGGGCAGAGTGGACCCAGTGCTCTGTGACGTGTGGCTCTGGGACCCAGCAGAGAGGCCGGTCCTGTGACGTCACCAGCAACACCTGCTTGGGGCCCTCCATCCAGACACGGGCTTGCAGTCTGAGCAAGTGTGACACCCGCATCCGGCAGGACGGCGG???GAGCCAC??GTCACCTTGGTCTTCATGCT???TGAC?????GAG??GGCA??ATCACACGCATCCGT?TCTGC?????CCCAGTGCCCCAG???GGGGGCAAGAA???CAAAGGGAGTGGCCGGGAGACCAAAGCCTGCCAGGGCGCCCCATGCCCAATCGATGGCCGCTGGAGCCCCTGGTCCCCGTGGTCGGCCTGCACTGTCACCTGTGCCGGTGGGATCCGGGAGCGCACCCGGGTCTGCAACAGCCCTGAGCCTCAGTACGGAGGGAAGGCCTGCGTGGGGGATGTGCAGGAGCGTCAGATGTGCAACAAGAGGAGCTGCCCCGTGG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GTGTGTGAGCCCGAAAACCCATGCAAGGACAAGACACACAACTGCCACAAGCACGCGGAGTGCATCTACCTGGGCCACTTCAGCGACCCCATGTACAAGTGCGAGTGCCAGACAGGCTACGCGGGCGACGGGCTCATCTGCGGGGAGGACTCGGACCTGGACGGCTGGCCCAACCTCAATCTGGTCTGCGCCACCAACGCCACCTACCACTGCATCAAGGATAACTGCCCCCATCTGCCAAATTCTGGGCAGGAAGACTTTGACAAGGACGGGATTGGCGATGCCTGTGATGATGACGATGACAATGACGGTGTGACCGATGAGAAG???????????????????????????????????TGACTATGACAAGGATG???TTGGGGACCGCT???ACAACTGCCCTTAC????????????????????????????????????????????????????????????????????????????ATGTCTTCAATGAACGAGACAATTGTCCCTACGTCTACAACACTGACCAGAGGGACACGGATGGTGACGGTGTGGGGGATC??????????????????????????????????????ACCGACGTGGACAATGACCTTGTTGGGGACCAGTGTGACAACAACGAGGACATAGATGATGACGGCCACCAGAACAACCAGGACAACTGCCCCTACATCTCCAACGCCAACCAGGCTGACCATGACAGAGACGGCCAGGGCGACGCCTGTGACCCCGATGATGACAACGATGGCGTCCCCGATGACAGGGACAACTGCCGGCTTGTGTTCAACCCAGACCAGGAGGACTTGGACGGTGATGGACGGGGTGATATTTGTAAAGATGATTTTGACAATGAC??CATCCC???TATTGATGATGTGTGTCCTGAAAACAATGCCATCAGTGAGACAGACTTCAGGAACTTCCAGATGGTCCCCTTGGATCCCAAAGGGACCACCCAAATTGATCCCAACTGGGTCATTCGCCATCAAGGCAAGGAGCTGGTTCAGACAGCCAACTCGGACCCTGGCATCGCTGTAGGTTTTGACGAGTTTGGGTCTGTGGACTTCAGTGGCACATTCTACGTAAACACTGACCGGGACGACGACTATGCCGGCTTCGTCTTTGGTTACCAGTCAAGCAGCCGCTTCTATGTGGTGATGTGGAAGCAGGTGACGCAGACCTACTGGGAGGACCAGCCCACGCGGGCCTATGGCTACTCCGGCGTGTCCCTCAAGGTGGTGAACTCCACCACAGGGACGGGCGAGCACCTGAGGAACGCGCTGTGGCACACGGGGAACACGCCGGGGCAG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? ->mouse -ATGCTCTGGGCACTGGCCCTGCTGGCTCTGGGCATAGGGCCAAGAGCTTCTGCTGGTGACCACGTCAAGGACACTTCATTTGACCTTTTCAGCATCAGCAACATTAACCGGAAGACCATCGGTGCCAAGCAGTTCCGAGGGCCTGACCCCGGGGTGCCCGCCTACCGTTTTGTACGGTTTGACTACATCCCCCCAGTGAACACAGATGATCTCAACAGGATTGTCAAGCTTGCAAGGAGAAAGGAGGGCTTCTTCCTCACAGCCCAACTGAAGCAGGACCGCAAGTCTCGGGGAACGCTCCTGGTGTTGGAAGGCCCCGGCACCTCCCAGAGGCAGTTTGAGATTGTGTCCAATGGCCCAGGGGACACTTTGGACCTCAACTACTGGGTAGAAGGCAATCAGCATACCAACTTCCTGGAGGATGTGGGCCTGGCTGACTCCCAGTGGAAGAATGTGACTGTGCAGGTGGCCAGTGACACCTATAGCCTGTATGTGGGCTGCGATCTTATCGACAGTGTCACCCTGGAAGAACCATTCTATGAGCAGCTAGAAGTAGACAGGAGCAGGATGTACGTGGCCAAAGGTGCATCTCGAGAGAGTCACTTCAGGGGCTTGCTGCAGAATGTCCATCTCGTATTTGCAGATTCTGTGGAAGATATCTTAAGCAAGAAAGGCTGTCAACACAGCCAGGGAGCTGAAGTCAACACCATCAGTGAACATACAGAGACTCTCCATCTGAGCCCTCACATCACCACAGATCTCGTGGTCCAGGGTGTGGAGAAGGCACAGGAGGTGTGTACGCACTCCTGCGAGGAGTTGAGCAACATGATGAATGAGCTCTCTGGACTGCACGTCATGGTGAACCAGCTGAGCAAGAACCTGGAGAGAGTGTCTAGTGATAACCAGTTCCTTTTGGAGCTCATTGGGGGCCCTCTGAAGACAAGAAACATGTCAGCCTGTGTGCAGGAGGGCCGAATCTTTGCAGAAAATGAAACCTGGGTTGTGGATAGTTGTACCACATGCACCTGCAAGAAATTTAAAACAGTCTGCCATCAGATCACCTGCTCACCTGCAACTTGTGCCAACCCATCTTTTGTGGAAGGCGAGTGCTGTCCATCCTGTTCACACTCTGCAGACAGTGATGAGGGCTGGTCTCCGTGGGCAGAGTGGACCGAGTGTTCTGTCACCTGTGGCTCTGGGACCCAGCAGAGAGGCCGGTCTTGTGATGTCACCAGCAACACCTGCCTGGGCCCCTCCATTCAGACAAGGACATGCAGCCTGGGCAAATGTGATACGAGAATCCGTCAGAATGGAGGCTGGAGTCACTGGTCACCCTGGTCTTCATGCTCCGTGACTTGTGGAGTTGGCAATGTCACCCGCATACGTCTCTGCAACTCACCAGTGCCCCAGATGGGTGGCAAGAACTGCAAGGGCAGCGGCCGGGAAACCAAACCCTGTCAGCGTGATCCGTGCCCAATTGATGGCCGCTGGAGCCCCTGGTCCCCTTGGTCAGCCTGCACAGTTACCTGTGCTGGAGGGATCCGTGAGCGCTCACGTGTTTGCAACAGCCCTGAGCCCCAGTATGGAGGGAAGGACTGTGTCGGGGATGTGACAGAACACCAAATGTGCAACAAGAGAAGCTGCCCTATTGATGGGTGCTTATCCAACCCGTGTTTTCCTGGAGCCAAGTGCAACAGCTTCCCTGATGGGTCCTGGTCCTGTGGCTCCTGCCCAGTGGGCTTTCTGGGCAATGGTACCCACTGTGAGGACCTGGATGAGTGTGCTGTGGTCACAGATATTTGCTTCTCAACTAACAAAGCTCCCCGCTGTGTCAACACCAACCCGGGCTTCCACTGCCTGCCTTGTCCACCACGCTACAAGGGGAACCAACCCTTCGGTGTTGGCCTGGAGGATGCTAGGACAGAAAAACAAGTGTGTGAGCCAGAGAATCCATGTAAGGACAAGACTCACAGCTGCCACAAGAATGCAGAGTGCATCTACCTGGGCCACTTTAGTGACCCCATGTACAAGTGTGAGTGCCAGATTGGCTACGCAGGTGATGGGCTCATCTGCGGGGAGGACTCAGACCTGGATGGCTGGCCCAACAACAACCTGGTGTGTGCTACTAATGCCACCTACCACTGCATCAAGGACAACTGCCCCAAACTGCCAAATTCCGGGCAGGAGGATTTTGATAAGGATGGAATCGGAGATGCTTGTGACGAGGACGATGACAATGACGGTGTGAGCGATGAGAAGGACAATTGCCAGCTTCTCTTCAATCCCCGTCAATTAGACTATGACAAGGATGAGGTTGGAGACCGCTGTGACAACTGCCCCTATGTGCACAACCCAGCACAGATCGACACAGACAACAATGGCGAGGGGGATGCCTGCTCTGTGGACATTGACGGAGACGATGTTTTCAATGAGCGAGACAATTGTCCATATGTCTACAACACTGACCAGAGAGATACGGATGGTGATGGCGTGGGTGACCACTGTGACAATTGTCCTCTGATGCACAACCCAGATCAGATCGATCAGGACAATGATCTCGTTGGAGACCAGTGTGACAACAATGAGGACATAGATGATGACGGCCACCAGAACAACCAAGACAACTGCCCATACATCTCCAACTCCAACCAGGCTGACCATGACAACGACGGCAAGGGCGATGCCTGCGACTCTGATGATGACAATGATGGTGTTCCAGATGACAGGGACAACTGTCGGCTTGTGTTCAACCCAGACCAGGAAGACTCGGACGGTGACGGCCGAGGTGACATTTGTAAAGATGACTTTGACAATGATAATGTCCCAGATATTGATGATGTGTGCCCTGAGAACAATGCCATCACTGAGACAGACTTCAGAAACTTCCAGATGGTCCCTCTGGATCCCAAGGGGACCACACAAATTGATCCCAACTGGGTAATTCGTCACCAAGGCAAAGAGCTGGTGCAGACAGCAAACTCAGACCCTGGCATCGCTGTAGGTTTCGACGAGTTTGGGTCTGTGGACTTCAGTGGCACTTTCTATGTCAACACTGACCGGGATGATGACTACGCTGGCTTTGTCTTTGGCTATCAGTCAAGCAGCCGCTTCTATGTGGTGATGTGGAAGCAGGTGACCCAGACCTACTGGGAAGACAAGCCCAGTCGGGCTTACGGCTACTCTGGTGTGTCACTCAAAGTGGTAAACTCCACGACTGGTACTGGCGAGCACCTGAGGAATGCCCTGTGGCACACGGGAAACACAGAAGGCCAGGTCCGGACTCTATGGCATGACCCCAAAAACATTGGCTGGAAAGACTACACTGCCTACAGGTGGCACCTGATTCACAGGCCTAAGACAGGCTACATGAG???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? - ->human -????????????????TACAAGATATGGAGCAATTTTACGAACTATGGCTCAAGAGTCAAAAAAATGAAAAAAGTGAAGACATAGCCAGTCAGTCAAACAAGGAAAATGGAAAACAAATTCACATGCCAACAGATTATGCTGAAGTTACAGTGGACTTTCACTGCTGGATGTGTGGGAAAAACTGCAACAGTGAGAAGCAGTGGCAGGGCCACATCTCCTCCGAGAAGCACAAAGAGAAGGTTTTCCACACCGAGGACGACCAGTACTGCTGGCAGCACCGCTTCCCAACAGGCTATTTCAGTATTTGTGATAGGTATATGAATGGCACCTGCCCAGAAGGAAACAGCTGTAAATTTGCACATGGAAATGCCGAACTTCATGAATGGGAAGAAAGAAGAGATGCCCTAAAGATGAAGCTCAACAAAGCACGAAAAGATCACTTAATTGGCCCAAATGATAATGACTTTGGAAAATATAGTTTTTTGTTTAAAGATTTAAACTAA ->chimp -??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GTGGACTTTCACTGCTGGATGTGTGGGAAAAACTGCAACAGTGAGAAGCAGTGGCAGGGCCACATCTCCTCCGAGAAGCACAAAGAGAAGGTTTTCCACACCGAGGACGACCAGTACTGCTGGCAGCACCGCTTCCCAACAGGCTATTTCAGTATTTGTGATAGGTATATGAATGGCACCTGCCCAGAAGGAAACAGCTGTAAATTTGCACATGGAAATGCCGAACTTCATGAATGGGAAGAAAGAAGAGATGCCCTAAAGATGAAGCTCAACAAAGCACGAAAAGATCACTTAATTGGCCCAAATGATAATGACTTTGGAAAATATAGTTTTTTGTTTAAAGATTTAAACTAA ->mouse -????????????????TACATGATATAGAGCAATTTTATGAACTCTGGCTGAAGAACCAAAAAACTGAAAAAAGTGATGAGACAGCCAGTCACTGTAGCAAAGAAAACGGGAAGCAGATCCATATGCCAACAGACTATGCTGAAGTCACTGTGGACTTCCACTGCTGGATGTGTGGGAAGAACTGTAACAGTGAGAAGCAATGGCAAGACCACATCTCCTCTGAGAAGCACAAGGAGAAGGTTTTCCACACTGAGGATGACCAGTACTGCTGGCAGCACCGCTTCCCCACTGGGTACTTCAGTATTTGTGAGAGGTATATAAATGGCTCCTGCACAGAAGGAAGCAGCTGTAAATTTGCACATGGAAATGCTGAACTTCATGAATGGGAAGAAAGAAGAAAGGCCCTACAGATGAAATTCAAGAAAGCACGGAAAGATCACTTAATTGCCCCAAATGATAATGACTTTGGAAAATATAGTTTTTTGTTTAAAGATTTAAAGTAA - ->human -????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CGCCTGCGGATTCTACTGGGGGCCCCTGAGCGTGCACGGGGCGCACGAGCGGCTGCGCGCCGAGCCCGTGGGCACCTTCCTGGTGCGCGACAGCCGCCAGCGGAACTGCTTTTTCGCCCTTAGCGTGAAGATGGCCTCGGGACCCACGAGCATCCGCGTGCACTTTCAGGCCGGCCGCTTTCACCTGGATGGCAGCCGCGAGAGCTTCGACTGCCTCTTCGAGCTGCTGGAGCACTACGTGGCGGCGCCGCGCCGCATGCTGGGGGCCCCGCTGCGCCAGCGCCGCGTGCGGCCGCTGCAGGAGCTGTGCCGCCAGCGCATCGTGGCCACCGTGGGCCGCGAGAACCTGGCTCGCATCCCCCTCAACCCCGTCCTCCGCGACTACCTGAGCTCCTTCCCCTTCCAGATTTGA ->chimp -??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CGTGGGCACCTTCCTGGTGCGCGACAGCCGCCA???GAACTGCTT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GGGGCCCCGCTGCGCCAGCGCCGCGTGCGGCCGCTGCAGGAGCTGTGCCGCCAGCGCATCGTGGCTACCGTGGGCCGCGAGAA??????????ATCCCCCTCAACCCCGTCCTCCGCGACTACCTGAGCTCCTTCCCCTTCCAGATTTG? ->mouse ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGGACGCCTGCGGCTTCTATTGGGGACCCCTGAGCGTGCACGGGGCGCACGAGCGGCTGCGTGCCGAGCCCGTGGGCACCTTCTTGGTGCGCGACAGTCGCCAACGGAACTGCTTCTTCGCGCTCAGCGTGAAGATGGCTTCGGGCCCCACGAGCATCCGCGTGCACTTCCAGGCCGGCCGCTTCCACTTGGACGGCAGCCGCGAGACCTTCGACTGCCTTTTCGAGCTGCTGGAGCACTACGTGGCGGCGCCGCGCCGCATGTTGGGGGCCCCGCTGCGCCAGCGCCGCGTGCGGCCGCTGCAGGAGCTGTGTCGCCAGCGCATCGTGGCCGCCGTGGGTCGCGAGAACCTGGCGCGCATCCCTCTTAACCCGGTACTCCGTGACTACCTGAGTTCCTTCCCCTTCCAGATCTGA - ->human -ATGGAGAGGGCTTCTAAGAATCTTAAGGGTCGGTGTACCCGAGAGAACTGCAAGTACCTTCACCCTCCTCCACACTTAAAAACGCAGCTGGAGATTAATGGGCGGAACAATCTGATTCAACAGAAGACTGCCGCAGCCATGTTCGCCCAGCAGATGCAGCTTATGCTCCAAAACGCTCAAATGTCATCACTTGGTTCTTTTCCTATGACTCCATCAATTCCAGCTAATCCTCCCATGGCTTTCAATCCTTACATACCACATCCTGGGATGGGCCTCGTTCCTGCAGAACTTGTACCAAATACACCTGTTCTGATTCCTGGAAACCCACCTCTTGCAATGCCAGGAGCTGTTGGCCCAAAACTGATGCGTTCAGATAAACTGGAGGTTTGCCGAGAATTTCAGCGTGGAAATTGTACCCGTGGGGAGAATGATTGCCGCTATGCTCACCCTACTGATGCTTCCATGATTGAAGCGAGTGATAATACTGTGACAATCTGCATGGATTACATCAAAGGTCGATGCTCGCGGGAGAAATGCAAGTACTTTCATCCTCCTGCACACTTGCAAGCCAGACTCAAGGCAGCTCATCATCAGATGAACCATTCAGCTGCCTCTGCCATGGCCCTGCAGCCTGGTACACTGCAACTGATACCAAAGAGATCAGCACTGGAAAAGCCCAATGGTGCCACCCCGGTCTTTAATCCCACTGTTTTCCACTGCCAACAGGCTCTGACTAACCTGCAGCTCCCACAGCCGGCATTTATCCCTGCAGGGCCAATACTGTGCATGGCACCCGCTTCAAATATTGTGCCCATGATGCACGGTGCTACACCTACCACTGTGTCTGCAGCAACAACACCTGCCACCAGCGTTCCGTTCGCTGCACCAACTACAGGCAATCAG???????????? ->chimp -ATGGAGAGGGCTTCTAAGAATCTTAAGGGTCGGTGTACTCGAGAGAACTGCAAGTACCTTCACCCTCCTCCACACTTAAAAACGCAGCTGGAGATTAATGGGCGGAACAATCTGATTCAACAGAAGACTGCCGCAGCCATGTTCGCCCAGCAGATGCAGCTTATGCTCCAAAACGCTCAAATGTCATCACTT????CTTTTCCTATGACTCCATCACTTC????TAATCCTCCC????????????????????????????????????????????????????????TGTACCAAATACACCTGTTCTGATTCCTGGAAACCCACCTCTTGCAATGCCAGGAGCTGTTGGCCCAAAACTGATGCGTTCAGATAAACTGGAG???????GAGAATTTCAGCGTGGAAATTGTACCCGTGGGGAGAATGATTGCCGCTATGCTCACCCTACTGATGCTTCCATGATTGAAGCGAGTGATAATACTGTGACAATCTGCATGGATTACATCAAAG???GAT?CTCGCGGG??AAAT???AGTACTTTCATCCTCCT???CACTTG??AGCCAGACTCAAGGCAGCTCATCACCAGATGAACCATTCAGCTGCCTCTGCCATG???????????TGGTA?ACTGCAACTGATACCAAAGAGATC?????TGGAAAAGCCCAATGGTGCCACCCCGGTCTTTAATCCCACTGTTTTCCACTGCCAACAG???????????????CAGCTCCCACAGCCGGCATTTATC?????????????????????????????????????????????CCCATGATGCACGGTGCTACACCTACCACTGTGTCTGCAGCAACAACACCTGC???CAGCGTTCCGTTCGC?????????????????????????????????? ->mouse -???????????????????????????GGTCGGTGCACTCGTGAGAACTGCAAGTACCTCCACCCTCCACCGCACTTAAAGTCGCAGCTAGAAGTTAATGGGAGAAACAATCTGATTCAACAGAAGACTGCCGCAGCCATGTTCGCCCAGCACATGCAACTCATGCTGCAGAACGCTCAGATGTCATCTCTTGCGTCTTTTCCTATGAATCCATCACTTGCAGCTAATCCTGCCATGGCTTTCAATCCTTACATGACTCATCCTGGCATGGGCCTGGTTCCTGCTGAGCTTTTACCAAATGGTCCGGTTCTGATTTCTGGAAACCCTCCTCTTGCACTGCCAGGAGTTCCTGGTCCAAAGCCAATTCGTACAGATAGACTGGAGGTTTGCCGTGAATTTCAGCGTGGAAATTGTACCCGTGGGGAGAGCGAGTGCCGCTATGCTCACCCTACGGATGTTTCCATGATTGAAGTCACTGATAATTCTGTGACAATCTGCATGGATTACATTAAAGGCCGATGCTCCCGGGAGAAATGCAAGTACTTTCATCCTCCTCCCCACTTGCAGGCCAAACTCAGGGCAGCTCATCACCAGATGAACCATTCTGCTGCCAATGCAATGGCCCTGCCGCATGGTGCACTTCAACTGATACCAAAGAGGTCAGCCCTTGACAAGGCCAATGGTGCCACTCCAGTCTTTAACCCCAGTGTTTTCCACTGCCAACAGGCTCTGGCTAACATGCAGATTCCTCAGCAGGCTTTTATCCCAACAGGGCAAATACTGTGCATGACTCCTACTTCAACTTTTGTGCCCATGATGCACGGTGCTACACCTTCCACTGTGTCTACAGCAACACCACCTGCCAGCAACGTTCCCTACGTTCCAACAACTACAGGCAACCAG???????????? diff -r 40b9b13ec62b43d83e96d6624edbaea967da82a6 -r f68bd3660813e4d5024a71d84a8a8c0a24ae892a test-data/dnds_out.tabular --- a/test-data/dnds_out.tabular +++ /dev/null @@ -1,12 +0,0 @@ -BLOCK BP S_sites NS_sites Stop_codons LogL omega omega_range AC AT CG CT GT Tree -1 1554 355.669 1129.12 1 -2747.41 0.101091 0.0764852-0.130612 1 1 1 1 1 (human:0,chimp:0.00240807,mouse:0.146665) -2 3795 924.935 2749.35 1 -5781.01 0.0179472 0.0119925-0.0256202 1 1 1 1 1 (human:0.000420081,chimp:0.00148421,mouse:0.144947) -3 1194 272.323 881.914 1 -2043.72 0.0578031 0.0372143-0.084959 1 1 1 1 1 (human:0.00284673,chimp:0.00410898,mouse:0.119894) -4 1146 248.261 850.364 1 -1871.67 0.0127675 0.00548017-0.0247362 1 1 1 1 1 (human:0,chimp:0.000930953,mouse:0.147214) -5 1500 366.374 1086.09 2 -2522.97 0.0331798 0.020375-0.0505273 1 1 1 1 1 (human:0,chimp:0.00225972,mouse:0.15608) -6 3444 824.107 2475.54 1 -5459.18 0.0439794 0.0326464-0.0577021 1 1 1 1 1 (human:0.000511634,chimp:0.00203553,mouse:0.12664) -7 2175 505.186 1587.7 0 -3307.52 0.0711476 0.0563725-0.088397 1 1 1 1 1 (human:0.00229288,chimp:0.00236918,mouse:0.226482) -8 3519 792.702 2601.36 0 -6219.39 0.0669744 0.0568959-0.0782191 1 1 1 1 1 (human:0.00102613,chimp:0.00431639,mouse:0.251285) -9 501 100.22 376.039 1 -834.329 0.130018 0.0833903-0.191879 1 1 1 1 1 (human:0,chimp:0,mouse:0.150605) -10 633 160.252 453.228 1 -618.997 0.0151077 0.00250472-0.0467226 1 1 1 1 1 (human:0,chimp:0.00611289,mouse:0.104294) -11 915 229.705 658.82 0 -1664.02 0.299399 0.227668-0.385279 1 1 1 1 1 (human:0.00457673,chimp:0,mouse:0.145584) diff -r 40b9b13ec62b43d83e96d6624edbaea967da82a6 -r f68bd3660813e4d5024a71d84a8a8c0a24ae892a test-data/encode_1.bed --- a/test-data/encode_1.bed +++ /dev/null @@ -1,568 +0,0 @@ -chr7 26853157 26854215 EarlyRepSeg -chr7 26865558 26956110 EarlyRepSeg -chr7 26956330 26958851 EarlyRepSeg -chr7 26958893 26959464 EarlyRepSeg -chr7 26959504 26959533 EarlyRepSeg -chr7 26960356 26960376 EarlyRepSeg -chr7 26960632 26960801 EarlyRepSeg -chr7 89741530 89743766 EarlyRepSeg -chr7 89743824 89744003 EarlyRepSeg -chr7 89744088 89744106 EarlyRepSeg -chr7 89745480 89968351 EarlyRepSeg -chr7 90542632 90542691 EarlyRepSeg -chr7 113919823 113919871 EarlyRepSeg -chr7 113919935 113920029 EarlyRepSeg -chr7 113920113 113920978 EarlyRepSeg -chr7 113922569 113924554 EarlyRepSeg -chr7 113924746 113924793 EarlyRepSeg -chr7 113924833 113927725 EarlyRepSeg -chr7 113927893 113928509 EarlyRepSeg -chr7 113929396 113929453 EarlyRepSeg -chr7 113933276 114108846 EarlyRepSeg -chr7 114108947 114119346 EarlyRepSeg -chr7 114119404 114119556 EarlyRepSeg -chr7 114119621 114123541 EarlyRepSeg -chr7 114124457 114124490 EarlyRepSeg -chr7 114124634 114136954 EarlyRepSeg -chr7 114142730 114142885 EarlyRepSeg -chr7 114143714 114143737 EarlyRepSeg -chr7 114143779 114144176 EarlyRepSeg -chr7 114144305 114144327 EarlyRepSeg -chr7 114360998 114361020 EarlyRepSeg -chr7 114362526 114363858 EarlyRepSeg -chr7 115404471 116251468 EarlyRepSeg -chr7 116251612 116251638 EarlyRepSeg -chr7 116251693 116251827 EarlyRepSeg -chr7 116251956 116252352 EarlyRepSeg -chr7 116252418 116253165 EarlyRepSeg -chr7 116463012 116463121 EarlyRepSeg -chr7 116474219 116474393 EarlyRepSeg -chr7 116474517 116474771 EarlyRepSeg -chr7 116484623 116561352 EarlyRepSeg -chr7 116561778 116562791 EarlyRepSeg -chr7 116563539 116571400 EarlyRepSeg -chr7 116572311 116572335 EarlyRepSeg -chr7 116572377 116572548 EarlyRepSeg -chr7 116576381 116576667 EarlyRepSeg -chr7 116597894 116597915 EarlyRepSeg -chr7 116598129 116598237 EarlyRepSeg -chr7 116598300 116608071 EarlyRepSeg -chr7 116608165 116608209 EarlyRepSeg -chr7 116608255 116608278 EarlyRepSeg -chr7 116608335 116608527 EarlyRepSeg -chr7 116609208 116609273 EarlyRepSeg -chr7 116630981 116631297 EarlyRepSeg -chr7 116633902 116634213 EarlyRepSeg -chr7 116634270 116641382 EarlyRepSeg -chr7 116694148 116698403 EarlyRepSeg -chr7 116698511 116698606 EarlyRepSeg -chr7 116698648 116698807 EarlyRepSeg -chr7 116699036 116699669 EarlyRepSeg -chr7 116735241 116737872 EarlyRepSeg -chr7 116738045 116738948 EarlyRepSeg -chr7 116739086 116739461 EarlyRepSeg -chr7 116739526 116742149 EarlyRepSeg -chr7 116742220 116744605 EarlyRepSeg -chr7 116746201 116746659 EarlyRepSeg -chr7 116746728 116746820 EarlyRepSeg -chr7 116747018 116758597 EarlyRepSeg -chr7 116763552 116928910 EarlyRepSeg -chr7 116929761 116930077 EarlyRepSeg -chr7 116931422 116931446 EarlyRepSeg -chr6 41867303 41867713 EarlyRepSeg -chr6 41868622 41868636 EarlyRepSeg -chr6 41871084 41871127 EarlyRepSeg -chr6 41871277 41871508 EarlyRepSeg -chr6 41881436 41904567 EarlyRepSeg -chr6 74114855 74115081 EarlyRepSeg -chr6 74115174 74289952 EarlyRepSeg -chr6 108641673 108641689 EarlyRepSeg -chr6 108641837 108645076 EarlyRepSeg -chr6 108645288 108645828 EarlyRepSeg -chr6 108645850 108645872 EarlyRepSeg -chr6 108645893 108647550 EarlyRepSeg -chr6 108655265 108657582 EarlyRepSeg -chr6 108658752 108658815 EarlyRepSeg -chr6 108667835 108668566 EarlyRepSeg -chr6 108675247 108677563 EarlyRepSeg 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-chr21 33581954 33582007 EarlyRepSeg -chr21 33583555 33583569 EarlyRepSeg -chr21 33588909 33696499 EarlyRepSeg -chr21 33701210 33702335 EarlyRepSeg -chr21 33703711 33846043 EarlyRepSeg -chr21 33849912 33850091 EarlyRepSeg -chr21 33850300 33850348 EarlyRepSeg -chr21 33850908 33853290 EarlyRepSeg -chr21 33853477 33853863 EarlyRepSeg -chr21 33854415 33854525 EarlyRepSeg -chr21 33860617 33861553 EarlyRepSeg -chr21 33866117 33867043 EarlyRepSeg -chr21 33867103 33867476 EarlyRepSeg -chr21 33867667 33867813 EarlyRepSeg -chr21 33867890 33867925 EarlyRepSeg -chr21 33868277 33868602 EarlyRepSeg -chr21 34062073 34062141 EarlyRepSeg -chr21 34065246 34066028 EarlyRepSeg -chr21 34083525 34084396 EarlyRepSeg -chr21 34084507 34084731 EarlyRepSeg -chr21 34084771 34084899 EarlyRepSeg -chr21 34084941 34085007 EarlyRepSeg -chr21 34085853 34086015 EarlyRepSeg -chr21 34086163 34086256 EarlyRepSeg -chr21 34086596 34147021 EarlyRepSeg -chr21 34147160 34147200 EarlyRepSeg -chr21 34147243 34166659 EarlyRepSeg 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-chr21 39506003 39506049 EarlyRepSeg -chr21 39506091 39506345 EarlyRepSeg -chr21 39506424 39506484 EarlyRepSeg -chr21 39506703 39507084 EarlyRepSeg -chr21 39507119 39630459 EarlyRepSeg -chr21 39630770 39631537 EarlyRepSeg -chr21 39631609 39632660 EarlyRepSeg -chr21 39634408 39634612 EarlyRepSeg -chr21 39634672 39637021 EarlyRepSeg -chr21 39637718 39637740 EarlyRepSeg -chr21 39638104 39639318 EarlyRepSeg -chr21 39639514 39639764 EarlyRepSeg -chr21 39639832 39640101 EarlyRepSeg -chr21 39640247 39640471 EarlyRepSeg -chr21 39642473 39642490 EarlyRepSeg -chr21 39642699 39643256 EarlyRepSeg -chr21 39643292 39643361 EarlyRepSeg -chr20 33304928 33309185 EarlyRepSeg -chr20 33331535 33662613 EarlyRepSeg -chr20 33663823 33784967 EarlyRepSeg -chr8 119109535 119109779 EarlyRepSeg -chr8 119133176 119314664 EarlyRepSeg -chr8 119314783 119314804 EarlyRepSeg -chr8 119315080 119315854 EarlyRepSeg -chr8 119316284 119317841 EarlyRepSeg -chr8 119317881 119319990 EarlyRepSeg -chr8 119321302 119322430 EarlyRepSeg -chr8 119322628 119322752 EarlyRepSeg This diff is so big that we needed to truncate the remainder. 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