# HG changeset patch -- Bitbucket.org # Project galaxy-dist # URL http://bitbucket.org/galaxy/galaxy-dist/overview # User Dan Blankenberg dan@bx.psu.edu # Date 1277740225 14400 # Node ID c37eed98f8c974d7591db0b845a515c731d00787 # Parent 980a38b7f8748e5a852ff06d9cdf59be810f97f7 Update UCSC table browser datasource tools to treat data marked as 'gff' as 'gtf'.

--- a/tools/data_source/ucsc_tablebrowser_archaea.xml +++ b/tools/data_source/ucsc_tablebrowser_archaea.xml @@ -30,6 +30,7 @@ <value galaxy_value="interval" remote_value="tab" /><value galaxy_value="html" remote_value="hyperlinks" /><value galaxy_value="fasta" remote_value="sequence" /> + <value galaxy_value="gtf" remote_value="gff" /></value_translation></request_param></request_param_translation>

--- a/tools/data_source/ucsc_tablebrowser.xml +++ b/tools/data_source/ucsc_tablebrowser.xml @@ -30,6 +30,7 @@ <value galaxy_value="interval" remote_value="tab" /><value galaxy_value="html" remote_value="hyperlinks" /><value galaxy_value="fasta" remote_value="sequence" /> + <value galaxy_value="gtf" remote_value="gff" /></value_translation></request_param></request_param_translation>

--- a/tools/data_source/ucsc_tablebrowser_test.xml +++ b/tools/data_source/ucsc_tablebrowser_test.xml @@ -30,6 +30,7 @@ <value galaxy_value="interval" remote_value="tab" /><value galaxy_value="html" remote_value="hyperlinks" /><value galaxy_value="fasta" remote_value="sequence" /> + <value galaxy_value="gtf" remote_value="gff" /></value_translation></request_param></request_param_translation>