# HG changeset patch --
Bitbucket.org
# Project galaxy-dist
# URL
http://bitbucket.org/galaxy/galaxy-dist/overview
# User Dan Blankenberg <dan(a)bx.psu.edu>
# Date 1277740225 14400
# Node ID c37eed98f8c974d7591db0b845a515c731d00787
# Parent 980a38b7f8748e5a852ff06d9cdf59be810f97f7
Update UCSC table browser datasource tools to treat data marked as 'gff' as
'gtf'.
--- a/tools/data_source/ucsc_tablebrowser_archaea.xml
+++ b/tools/data_source/ucsc_tablebrowser_archaea.xml
@@ -30,6 +30,7 @@
<value galaxy_value="interval" remote_value="tab"
/><value galaxy_value="html" remote_value="hyperlinks"
/><value galaxy_value="fasta" remote_value="sequence" />
+ <value galaxy_value="gtf" remote_value="gff"
/></value_translation></request_param></request_param_translation>
--- a/tools/data_source/ucsc_tablebrowser.xml
+++ b/tools/data_source/ucsc_tablebrowser.xml
@@ -30,6 +30,7 @@
<value galaxy_value="interval" remote_value="tab"
/><value galaxy_value="html" remote_value="hyperlinks"
/><value galaxy_value="fasta" remote_value="sequence" />
+ <value galaxy_value="gtf" remote_value="gff"
/></value_translation></request_param></request_param_translation>
--- a/tools/data_source/ucsc_tablebrowser_test.xml
+++ b/tools/data_source/ucsc_tablebrowser_test.xml
@@ -30,6 +30,7 @@
<value galaxy_value="interval" remote_value="tab"
/><value galaxy_value="html" remote_value="hyperlinks"
/><value galaxy_value="fasta" remote_value="sequence" />
+ <value galaxy_value="gtf" remote_value="gff"
/></value_translation></request_param></request_param_translation>