Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 64f8e1cf3c27d86f625736ecd0438df7d329ca2d https://github.com/galaxyproject/galaxy/commit/64f8e1cf3c27d86f625736ecd0438... Author: Nicola Soranzo nicola.soranzo@earlham.ac.uk Date: 2017-03-28 (Tue, 28 Mar 2017)

Changed paths: M lib/galaxy/datatypes/interval.py M lib/galaxy/datatypes/util/gff_util.py

Log Message: ----------- Stricter checks for GFF/GFF3/GTF sniffing

Check frame column in Gff.sniff() and Gtf.sniff() . Parse attributes column in Gff3.sniff() with a specific function to prevent non-compliant GTF files being recognised as GFF3.

Commit: 32e8a2023deef55db60c61910321e366f40396d6 https://github.com/galaxyproject/galaxy/commit/32e8a2023deef55db60c61910321e... Author: Nicola Soranzo nicola.soranzo@earlham.ac.uk Date: 2017-03-28 (Tue, 28 Mar 2017)

Changed paths: M .ci/flake8_lint_include_list.txt M lib/galaxy/datatypes/util/gff_util.py

Log Message: ----------- Fix import order for lib/galaxy/datatypes/util/gff_util.py

Commit: 90ac2f43566220cd82a771afd2040a1410addb4a https://github.com/galaxyproject/galaxy/commit/90ac2f43566220cd82a771afd2040... Author: Dannon Baker dannon.baker@gmail.com Date: 2017-03-30 (Thu, 30 Mar 2017)

Changed paths: M .ci/flake8_lint_include_list.txt M lib/galaxy/datatypes/interval.py M lib/galaxy/datatypes/util/gff_util.py

Log Message: ----------- Merge pull request #3832 from nsoranzo/gff_sniff_fix

Stricter checks for GFF/GFF3/GTF sniffing

Compare: https://github.com/galaxyproject/galaxy/compare/3d2833fdb72b...90ac2f435662