Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 370346ad9e7e828a5048382ccdc048c7bad2152a https://github.com/galaxyproject/galaxy/commit/370346ad9e7e828a5048382ccdc04... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2016-08-08 (Mon, 08 Aug 2016) Changed paths: M lib/galaxy/tools/deps/resolvers/galaxy_packages.py M lib/galaxy/tools/deps/resolvers/tool_shed_packages.py M lib/galaxy/tools/deps/views.py M lib/tool_shed/util/shed_util_common.py Log Message: ----------- List toolshed deps in 'Dependency Resolver Details' This should make it easier to understand/predict for admins how tool dependencies will be resolved during tool execution. Commit: 7f0d323aca5c0ea546f4186d3364d68441217e97 https://github.com/galaxyproject/galaxy/commit/7f0d323aca5c0ea546f4186d3364d... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2016-08-08 (Mon, 08 Aug 2016) Changed paths: M lib/galaxy/tools/__init__.py M lib/galaxy/tools/deps/views.py M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py M lib/tool_shed/util/shed_util_common.py Log Message: ----------- Include toolshed resolved packages in tool requirements API Commit: b0bd9a3326285e20adfa74de891777137766b0c5 https://github.com/galaxyproject/galaxy/commit/b0bd9a3326285e20adfa74de89177... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2016-08-08 (Mon, 08 Aug 2016) Changed paths: M test/unit/tools/test_tool_deps.py Log Message: ----------- Adjust test for new GalaxyPackageDependency signature Commit: 45d357e7c39b6564915dfc037439c546011c9c2b https://github.com/galaxyproject/galaxy/commit/45d357e7c39b6564915dfc037439c... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2016-08-08 (Mon, 08 Aug 2016) Changed paths: M lib/galaxy/tools/deps/resolvers/galaxy_packages.py M lib/galaxy/tools/deps/resolvers/tool_shed_packages.py Log Message: ----------- Introduce ToolShedDependency as subclass of GalaxyPackageDependency Commit: 0bfa56f010f38b4f151c1f3257478a926ea7cc38 https://github.com/galaxyproject/galaxy/commit/0bfa56f010f38b4f151c1f3257478... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2016-08-08 (Mon, 08 Aug 2016) Changed paths: M lib/galaxy/tools/deps/resolvers/galaxy_packages.py Log Message: ----------- Fix list of public objects Commit: f8fef3269729358de20c688d02b3aca339d8eeaa https://github.com/galaxyproject/galaxy/commit/f8fef3269729358de20c688d02b3a... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2016-08-09 (Tue, 09 Aug 2016) Changed paths: M lib/galaxy/tools/deps/resolvers/galaxy_packages.py M lib/galaxy/tools/deps/resolvers/tool_shed_packages.py Log Message: ----------- Change DependencyType class variable to dependency_type Commit: 7e3d7ced81d70ac1544f4d94bdb22a7a8e3986c6 https://github.com/galaxyproject/galaxy/commit/7e3d7ced81d70ac1544f4d94bdb22... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2016-08-09 (Tue, 09 Aug 2016) Changed paths: M lib/galaxy/tools/deps/views.py Log Message: ----------- Avoid changes in requested_requirements Commit: a72f9d88650719ed2c4a149861eee3321c4d6e07 https://github.com/galaxyproject/galaxy/commit/a72f9d88650719ed2c4a149861eee... Author: Nicola Soranzo <nicola.soranzo@tgac.ac.uk> Date: 2016-08-09 (Tue, 09 Aug 2016) Changed paths: M lib/galaxy/tools/deps/views.py Log Message: ----------- Pass installed_tool_dependencies as a parameter Commit: a297a0467116f007dcd7b952fd64c4caa2048492 https://github.com/galaxyproject/galaxy/commit/a297a0467116f007dcd7b952fd64c... Author: Martin Cech <cech.marten@gmail.com> Date: 2016-08-09 (Tue, 09 Aug 2016) Changed paths: M lib/galaxy/tools/__init__.py M lib/galaxy/tools/deps/resolvers/galaxy_packages.py M lib/galaxy/tools/deps/resolvers/tool_shed_packages.py M lib/galaxy/tools/deps/views.py M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py M test/unit/tools/test_tool_deps.py Log Message: ----------- Merge pull request #2750 from mvdbeek/list_resolver_toolshed_packages List resolver toolshed packages Commit: 1d0c37e91a6d9f334698c09caa1f594fb1075874 https://github.com/galaxyproject/galaxy/commit/1d0c37e91a6d9f334698c09caa1f5... Author: Nicola Soranzo <nicola.soranzo@tgac.ac.uk> Date: 2016-08-09 (Tue, 09 Aug 2016) Changed paths: M lib/galaxy/tools/__init__.py M lib/galaxy/tools/deps/resolvers/galaxy_packages.py M lib/galaxy/tools/deps/resolvers/tool_shed_packages.py M lib/galaxy/tools/deps/views.py M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py M test/unit/tools/test_tool_deps.py Log Message: ----------- Merge branch 'release_16.07' into dev Compare: https://github.com/galaxyproject/galaxy/compare/0b98601779e3...1d0c37e91a6d