Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: c0dca7a44cd12492ec34ad9c7cf2a7aa5ab0d116 https://github.com/galaxyproject/galaxy/commit/c0dca7a44cd12492ec34ad9c7cf2a... Author: Nicola Soranzo nicola.soranzo@earlham.ac.uk Date: 2019-02-04 (Mon, 04 Feb 2019)

Changed paths: M test/unit/tools/test_toolbox.py

Log Message: ----------- Respect `section=False` parameter in `BaseToolBoxTestCase._setup_two_versions_in_config()`

Broken in commit fd1c34b4c9fec55286c3d33e2802062ef393de82

Commit: 87d4904189e42b9263bea70a321bf80ae4549a93 https://github.com/galaxyproject/galaxy/commit/87d4904189e42b9263bea70a321bf... Author: Nicola Soranzo nicola.soranzo@earlham.ac.uk Date: 2019-02-05 (Tue, 05 Feb 2019)

Changed paths: M templates/webapps/tool_shed/common/common.mako

Log Message: ----------- Remove spurious quote

Commit: ab03de44e86a376a4c7d98dad9b683992327aa32 https://github.com/galaxyproject/galaxy/commit/ab03de44e86a376a4c7d98dad9b68... Author: Nicola Soranzo nicola.soranzo@earlham.ac.uk Date: 2019-02-05 (Tue, 05 Feb 2019)

Changed paths: M lib/tool_shed/galaxy_install/tools/tool_panel_manager.py M test/unit/shed_unit/test_tool_panel_manager.py M test/unit/tools/test_toolbox.py

Log Message: ----------- Do not remove tools from other installed revisions when uninstalling TS repo

Multiple installed revisions of a repository can provide the same version of a tool, e.g. for the repository

https://toolshed.g2.bx.psu.edu/view/nilesh/rseqc

only one tool out of 22 has a different version in revision 57 with respect to revision 56.

In this case, when uninstalling one repository, the tools with the same guid were removed also from the other repository revisions in the `shed_tool_conf` file. This can be prevented by checking also the tool path.

Commit: f84a29b9545d544d8d1bbe0a433f3e8dd647cbaf https://github.com/galaxyproject/galaxy/commit/f84a29b9545d544d8d1bbe0a433f3... Author: Marius van den Beek m.vandenbeek@gmail.com Date: 2019-02-05 (Tue, 05 Feb 2019)

Changed paths: M lib/tool_shed/galaxy_install/tools/tool_panel_manager.py M templates/webapps/tool_shed/common/common.mako M test/unit/shed_unit/test_tool_panel_manager.py M test/unit/tools/test_toolbox.py

Log Message: ----------- Merge pull request #7300 from nsoranzo/toolshed_fixes

Do not remove tools from other installed revisions when uninstalling TS repo

Compare: https://github.com/galaxyproject/galaxy/compare/71b01b1be3f7...f84a29b9545d