Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: a1e79b13e1471f73a9ef192c0b7762ec6322fa93 https://github.com/galaxyproject/galaxy/commit/a1e79b13e1471f73a9ef192c0b776... Author: Evgeny Anatskiy <evgeny.anatskiy@gmail.com> Date: 2017-09-03 (Sun, 03 Sep 2017) Changed paths: A test/selenium_tests/test_saved_histories.py Log Message: ----------- add the first test Commit: 29622bba69422389f7bae7dfa2b6f7c9a6542acb https://github.com/galaxyproject/galaxy/commit/29622bba69422389f7bae7dfa2b6f... Author: Evgeny Anatskiy <evgeny.anatskiy@gmail.com> Date: 2017-09-05 (Tue, 05 Sep 2017) Changed paths: M test/selenium_tests/test_saved_histories.py Log Message: ----------- add history rename test Commit: c57b993b456d226da3896633a576013b977eab1b https://github.com/galaxyproject/galaxy/commit/c57b993b456d226da3896633a5760... Author: Evgeny Anatskiy <evgeny.anatskiy@gmail.com> Date: 2017-09-06 (Wed, 06 Sep 2017) Changed paths: M test/selenium_tests/test_saved_histories.py Log Message: ----------- quick fix Commit: 7824fdab6b0001570001b60bc76e3a77da402877 https://github.com/galaxyproject/galaxy/commit/7824fdab6b0001570001b60bc76e3... Author: Evgeny Anatskiy <evgeny.anatskiy@gmail.com> Date: 2017-09-06 (Wed, 06 Sep 2017) Changed paths: M test/selenium_tests/test_saved_histories.py Log Message: ----------- add delete/undelete test Commit: bca6dfefb6946aa5497819a5d80c74f3d2a7210f https://github.com/galaxyproject/galaxy/commit/bca6dfefb6946aa5497819a5d80c7... Author: Evgeny Anatskiy <evgeny.anatskiy@gmail.com> Date: 2017-09-07 (Thu, 07 Sep 2017) Changed paths: M test/selenium_tests/test_saved_histories.py Log Message: ----------- add history switch test Commit: da42c16ae7014723012dccdc17c0d39a32ab5713 https://github.com/galaxyproject/galaxy/commit/da42c16ae7014723012dccdc17c0d... Author: Evgeny Anatskiy <evgeny.anatskiy@gmail.com> Date: 2017-09-07 (Thu, 07 Sep 2017) Changed paths: M test/selenium_tests/test_saved_histories.py Log Message: ----------- add history view test Commit: ff769da9287ddc7f6ad598799a9773d6a2d77c30 https://github.com/galaxyproject/galaxy/commit/ff769da9287ddc7f6ad598799a977... Author: Evgeny Anatskiy <evgeny.anatskiy@gmail.com> Date: 2017-09-07 (Thu, 07 Sep 2017) Changed paths: M test/selenium_tests/test_saved_histories.py Log Message: ----------- add history publish test Commit: 29ed1bec66ddfb5b1a8559a0a6a8f34aeb928c14 https://github.com/galaxyproject/galaxy/commit/29ed1bec66ddfb5b1a8559a0a6a8f... Author: Evgeny Anatskiy <evgeny.anatskiy@gmail.com> Date: 2017-09-07 (Thu, 07 Sep 2017) Changed paths: M test/selenium_tests/test_saved_histories.py Log Message: ----------- add multiple histories delete/undelete test Commit: 5dedd397718166723cdc0bb054565b69e7435d23 https://github.com/galaxyproject/galaxy/commit/5dedd397718166723cdc0bb054565... Author: Evgeny Anatskiy <evgeny.anatskiy@gmail.com> Date: 2017-09-07 (Thu, 07 Sep 2017) Changed paths: M test/selenium_tests/test_saved_histories.py Log Message: ----------- add sort by name test Commit: e6ebc9e022dd184109374f7f30dec3505b9a2c6e https://github.com/galaxyproject/galaxy/commit/e6ebc9e022dd184109374f7f30dec... Author: Evgeny Anatskiy <evgeny.anatskiy@gmail.com> Date: 2017-09-07 (Thu, 07 Sep 2017) Changed paths: M test/selenium_tests/test_saved_histories.py Log Message: ----------- add standard search test Commit: 90f0dfc8bcf04309873e8cd8771840c2c7e9fa8d https://github.com/galaxyproject/galaxy/commit/90f0dfc8bcf04309873e8cd877184... Author: Evgeny Anatskiy <evgeny.anatskiy@gmail.com> Date: 2017-09-07 (Thu, 07 Sep 2017) Changed paths: M test/selenium_tests/test_saved_histories.py Log Message: ----------- add advanced search test Commit: 316eb330bb21b4bd54c340b389217de9f91f0097 https://github.com/galaxyproject/galaxy/commit/316eb330bb21b4bd54c340b389217... Author: Evgeny Anatskiy <evgeny.anatskiy@gmail.com> Date: 2017-09-07 (Thu, 07 Sep 2017) Changed paths: M test/selenium_tests/test_saved_histories.py Log Message: ----------- add permanently delete history test Commit: ca59aaeda017d605f05f6a22b8c6dc09a6f3be3c https://github.com/galaxyproject/galaxy/commit/ca59aaeda017d605f05f6a22b8c6d... Author: Evgeny Anatskiy <evgeny.anatskiy@gmail.com> Date: 2017-09-10 (Sun, 10 Sep 2017) Changed paths: M test/selenium_tests/test_saved_histories.py Log Message: ----------- add the tags test Commit: d78e60186b6138efe45c1b4107254e624d7424f2 https://github.com/galaxyproject/galaxy/commit/d78e60186b6138efe45c1b4107254... Author: Evgeny Anatskiy <evgeny.anatskiy@gmail.com> Date: 2017-09-10 (Sun, 10 Sep 2017) Changed paths: M .ci/flake8_lint_include_list.txt M .ci/jenkins/selenium/docker-compose.yml M client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js M client/galaxy/scripts/mvc/history/options-menu.js M client/galaxy/scripts/mvc/library/library-dataset-view.js M client/galaxy/scripts/mvc/library/library-folder-view.js M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js M client/galaxy/scripts/mvc/library/library-library-view.js M client/galaxy/scripts/mvc/library/library-librarytoolbar-view.js M client/galaxy/scripts/utils/uploadbox.js M config/datatypes_conf.xml.sample M config/dependency_resolvers_conf.xml.sample M config/galaxy.ini.sample A config/lmod_modules_mapping.yml.sample A config/plugins/interactive_environments/hicbrowser/config/allowed_images.yml.sample A config/plugins/interactive_environments/hicbrowser/config/hicbrowser.ini.sample A config/plugins/interactive_environments/hicbrowser/config/hicbrowser.xml A config/plugins/interactive_environments/hicbrowser/static/js/hicbrowser.js A config/plugins/interactive_environments/hicbrowser/templates/hicbrowser.mako A doc/source/dev/finding_and_improving_slow_code.rst M lib/galaxy/config.py M lib/galaxy/datatypes/binary.py A lib/galaxy/datatypes/converters/biom1_to_biom2.xml A lib/galaxy/datatypes/converters/biom2_to_biom1.xml M lib/galaxy/datatypes/registry.py M lib/galaxy/datatypes/sniff.py A lib/galaxy/datatypes/test/biom2_sparse_otu_table_hdf5.biom M lib/galaxy/datatypes/text.py M lib/galaxy/dependencies/__init__.py M lib/galaxy/dependencies/conditional-requirements.txt M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/dependencies/requirements.txt M lib/galaxy/jobs/runners/util/cli/shell/rsh.py M lib/galaxy/managers/libraries.py A lib/galaxy/managers/library_datasets.py M lib/galaxy/managers/workflows.py M lib/galaxy/tools/actions/upload.py M lib/galaxy/tools/actions/upload_common.py A lib/galaxy/tools/deps/resolvers/lmod.py M lib/galaxy/tools/imp_exp/__init__.py M lib/galaxy/tools/xsd/galaxy.xsd M lib/galaxy/util/checkers.py M lib/galaxy/util/compression_utils.py R lib/galaxy/webapps/galaxy/api/lda_datasets.py A lib/galaxy/webapps/galaxy/api/library_datasets.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/controllers/history.py M lib/galaxy/webapps/galaxy/controllers/library_common.py M lib/galaxy/work/context.py M lib/galaxy/workflow/modules.py M lib/tool_shed/galaxy_install/installed_repository_manager.py M lib/tool_shed/util/commit_util.py M lib/tool_shed/util/xml_util.py M scripts/tool_shed/build_ts_whoosh_index.py M static/maps/mvc/history/options-menu.js.map M static/maps/mvc/library/library-dataset-view.js.map M static/maps/mvc/library/library-folder-view.js.map M static/maps/mvc/library/library-foldertoolbar-view.js.map M static/maps/mvc/library/library-library-view.js.map M static/maps/mvc/library/library-librarytoolbar-view.js.map M static/maps/utils/uploadbox.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/collection/list-of-pairs-collection-creator.js M static/scripts/mvc/history/options-menu.js M static/scripts/mvc/library/library-dataset-view.js M static/scripts/mvc/library/library-folder-view.js M static/scripts/mvc/library/library-foldertoolbar-view.js M static/scripts/mvc/library/library-library-view.js M static/scripts/mvc/library/library-librarytoolbar-view.js M static/scripts/utils/uploadbox.js A test-data/joiner_header_in1.tab A test-data/joiner_header_in2.tab A test-data/joiner_out1.bed A test-data/joiner_out2.bed A test-data/joiner_out3.bed A test-data/joiner_out4.bed A test-data/joiner_out5.tab A test-data/joiner_out6.tab A test-data/joiner_out7.tab M test/api/test_histories.py M test/api/test_libraries.py M test/api/test_tools.py M test/base/api.py M test/base/driver_util.py M test/base/interactor.py M test/base/populators.py R test/base/test_db_util.py A test/base/testcase.py M test/base/tool_shed_util.py R test/base/twilltestcase.py R test/functional/database_contexts.py R test/functional/test_library_templates.py M test/functional/test_toolbox.py M test/functional/tools/composite.xml M test/functional/tools/composite_output.xml M test/functional/tools/composite_output_tests.xml M test/functional/tools/metadata.xml A test/functional/twilltestcase.py M test/galaxy_selenium/navigates_galaxy.py M test/integration/test_upload_configuration_options.py M test/selenium_tests/framework.py M test/selenium_tests/test_history_panel.py M test/selenium_tests/test_login.py M test/selenium_tests/test_published_histories_grid.py M test/selenium_tests/test_workflow_management.py M test/shed_functional/base/test_db_util.py M test/shed_functional/base/twilltestcase.py M test/unit/tools/test_tool_deps.py M tools/data_source/upload.py M tools/filters/join.py M tools/filters/joiner.xml M tools/sr_assembly/velvetg.xml Log Message: ----------- Merge branch 'dev' into saved_histories_tests Commit: 8533c717879f7505b8f293c1ba945f3db63addcb https://github.com/galaxyproject/galaxy/commit/8533c717879f7505b8f293c1ba945... Author: Evgeny Anatskiy <evgeny.anatskiy@gmail.com> Date: 2017-09-10 (Sun, 10 Sep 2017) Changed paths: M test/selenium_tests/test_saved_histories.py Log Message: ----------- use the wait_for_and_click_selector function Commit: e2730ca7143f71758d6cd18f129c566447423302 https://github.com/galaxyproject/galaxy/commit/e2730ca7143f71758d6cd18f129c5... Author: John Chilton <jmchilton@gmail.com> Date: 2017-09-10 (Sun, 10 Sep 2017) Changed paths: M test/galaxy_selenium/has_driver.py M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/test_history_panel.py M test/selenium_tests/test_published_histories_grid.py M test/selenium_tests/test_saved_histories.py Log Message: ----------- Reduce duplication, increase robustness in Selenium history tests. - set_tags() appeared in both published and saved history tests, refactored into navigates_galaxy with function name history_panel_add_tags - is_displayed() appeared in both published and saved history tests, refactored into has_driver as selector_is_displayed - Introduced history_panel_rename to reduce duplication across history panel tests and newer published and saved history tests. - Removed custom history click option helper in saved and published history tests and just used the variant in navigates_galaxy. - use wait_for_and_click a couple more places... Commit: dcbe30515f02c3a9f7332f2f3a043132c6cf1fe5 https://github.com/galaxyproject/galaxy/commit/dcbe30515f02c3a9f7332f2f3a043... Author: John Chilton <jmchilton@gmail.com> Date: 2017-09-10 (Sun, 10 Sep 2017) Changed paths: M test/galaxy_selenium/navigates_galaxy.py Log Message: ----------- More robust rename for histories. I think the wait_for_and_click_selector method will prevent errors like this one https://jenkins.galaxyproject.org/job/selenium/249/testReport/selenium_tests.... Commit: dcc18134e79bcae7fb055162ba9f8d5f74e66b65 https://github.com/galaxyproject/galaxy/commit/dcc18134e79bcae7fb055162ba9f8... Author: Evgeny Anatskiy <evgeny.anatskiy@gmail.com> Date: 2017-09-11 (Mon, 11 Sep 2017) Changed paths: M test/selenium_tests/test_saved_histories.py Log Message: ----------- generate random history names Commit: 51464551647635e5a1859b3d42ddf281a4f89ad8 https://github.com/galaxyproject/galaxy/commit/51464551647635e5a1859b3d42ddf... Author: Evgeny Anatskiy <evgeny.anatskiy@gmail.com> Date: 2017-09-11 (Mon, 11 Sep 2017) Changed paths: M test/selenium_tests/test_published_histories_grid.py M test/selenium_tests/test_saved_histories.py Log Message: ----------- generate random history names for the published history grid tests Commit: 31f2168c3d7f321927a20f21baaddcbfec496389 https://github.com/galaxyproject/galaxy/commit/31f2168c3d7f321927a20f21baadd... Author: John Chilton <jmchilton@gmail.com> Date: 2017-09-11 (Mon, 11 Sep 2017) Changed paths: M test/galaxy_selenium/has_driver.py M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/test_history_panel.py M test/selenium_tests/test_published_histories_grid.py A test/selenium_tests/test_saved_histories.py Log Message: ----------- Merge pull request #4587 from anatskiy/saved_histories_tests Add Selenium tests for the Saved Histories Compare: https://github.com/galaxyproject/galaxy/compare/1359965a992f...31f2168c3d7f