1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/2aafb7e80253/
Changeset: 2aafb7e80253
User: greg
Date: 2014-08-04 15:17:51
Summary: Add the new builds_file_path to the Tool Shed's config.
Affected #: 2 files
diff -r 1a24c68d1c7f2db103e454e52a40e338db57c4f2 -r
2aafb7e802530d1398a4a217d11744313bbbe732 lib/galaxy/webapps/tool_shed/config.py
--- a/lib/galaxy/webapps/tool_shed/config.py
+++ b/lib/galaxy/webapps/tool_shed/config.py
@@ -53,6 +53,7 @@
self.tool_data_path = resolve_path( kwargs.get( "tool_data_path",
"shed-tool-data" ), os.getcwd() )
self.tool_data_table_config_path = resolve_path( kwargs.get(
'tool_data_table_config_path', 'tool_data_table_conf.xml' ), self.root )
self.shed_tool_data_table_config = resolve_path( kwargs.get(
'shed_tool_data_table_config', 'shed_tool_data_table_conf.xml' ),
self.root )
+ self.builds_file_path = resolve_path( kwargs.get( "builds_file_path",
os.path.join( self.tool_data_path, 'shared', 'ucsc', 'builds.txt')
), self.root )
self.len_file_path = resolve_path( kwargs.get( "len_file_path",
os.path.join( self.tool_data_path, 'shared','ucsc','chrom') ),
self.root )
self.ftp_upload_dir = kwargs.get( 'ftp_upload_dir', None )
# Install and test framework for testing tools contained in repositories.
diff -r 1a24c68d1c7f2db103e454e52a40e338db57c4f2 -r
2aafb7e802530d1398a4a217d11744313bbbe732 tool_shed_wsgi.ini.sample
--- a/tool_shed_wsgi.ini.sample
+++ b/tool_shed_wsgi.ini.sample
@@ -36,6 +36,9 @@
# Temporary storage for additional datasets, this should be shared through the cluster
new_file_path = database/tmp
+# File containing old-style genome builds
+#builds_file_path = tool-data/shared/ucsc/builds.txt
+
# Session support (beaker)
use_beaker_session = True
session_type = memory
Repository URL:
https://bitbucket.org/galaxy/galaxy-central/
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