1 new changeset in galaxy-central:
http://bitbucket.org/galaxy/galaxy-central/changeset/dd3c21ebfa4a/
changeset: r5119:dd3c21ebfa4a
user: kanwei
date: 2011-02-24 18:27:37
summary: Fix debugging output on BLASTX+ failure
affected #: 1 file (164 bytes)
--- a/tools/ncbi_blast_plus/hide_stderr.py Thu Feb 24 12:16:33 2011 -0500
+++ b/tools/ncbi_blast_plus/hide_stderr.py Thu Feb 24 12:27:37 2011 -0500
@@ -23,6 +23,13 @@
#Avoid using shell=True when we call subprocess to ensure if the Python
#script is killed, so too is the BLAST process.
try:
+ words = []
+ for w in sys.argv[1:]:
+ if " " in w:
+ words.append('"%s"' % w)
+ else:
+ words.append(w)
+ cmd = " ".join(words)
child = subprocess.Popen(sys.argv[1:],
stdout=subprocess.PIPE, stderr=subprocess.PIPE)
except Exception, err:
Repository URL:
https://bitbucket.org/galaxy/galaxy-central/
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