1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/77af7639e78d/ Changeset: 77af7639e78d Branch: next-stable User: jgoecks Date: 2014-09-24 14:24:50+00:00 Summary: Better stderr and exit code handling for interal wig-to-bigwig converter. Affected #: 1 file diff -r 30a9650534c3e3743b6303bb2f9326c55ec4c55b -r 77af7639e78dbb57f66c1059789e8d652882459e lib/galaxy/datatypes/converters/wig_to_bigwig_converter.xml --- a/lib/galaxy/datatypes/converters/wig_to_bigwig_converter.xml +++ b/lib/galaxy/datatypes/converters/wig_to_bigwig_converter.xml @@ -3,7 +3,10 @@ <requirements><requirement type="package">ucsc_tools</requirement></requirements> - <command>grep -v "^track" $input | wigToBigWig -clip stdin $chromInfo $output</command> + <command> + grep -v "^track" $input | wigToBigWig -clip stdin $chromInfo $output + 2>&1 || echo "Error running wiggle to bigwig converter." >&2 + </command><inputs><page><param format="wig" name="input" type="data" label="Choose wiggle"/> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.