9:21 p.m.
2 new commits in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/c4e19939b6a3/
Changeset: c4e19939b6a3
User: dannon
Date: 2014-08-28 23:21:03
Summary: Remove option for the (long since deprecated in favor of Data Managers)
data_admin interface from admin
Affected #: 1 file
diff -r 03e9b373ec42cf727a5d735876f55ab442f73310 -r
c4e19939b6a300c555a9fdab10b7372d8a8a73a1 templates/webapps/galaxy/admin/index.mako
--- a/templates/webapps/galaxy/admin/index.mako
+++ b/templates/webapps/galaxy/admin/index.mako
@@ -66,9 +66,6 @@
<div class="toolTitle"><a
href="${h.url_for( controller='admin', action='quotas' )}"
target="galaxy_main">Manage quotas</a></div>
%endif
<div class="toolTitle"><a
href="${h.url_for( controller='library_admin',
action='browse_libraries' )}" target="galaxy_main">Manage data
libraries</a></div>
- %if trans.app.config.enable_beta_job_managers:
- <div class="toolTitle"><a
href="${h.url_for( controller='data_admin', action='manage_data'
)}" target="galaxy_main">Manage local data</a></div>
- %endif
<div class="toolTitle"><a
href="${h.url_for( controller='data_manager' )}"
target="galaxy_main">Manage local data
(beta)</a></div></div></div>
https://bitbucket.org/galaxy/galaxy-central/commits/11e6f0627812/
Changeset: 11e6f0627812
User: dannon
Date: 2014-08-28 23:21:42
Summary: Merge.
Affected #: 25 files
diff -r c4e19939b6a300c555a9fdab10b7372d8a8a73a1 -r
11e6f06278126edb16c6333e2eddf6dd1a9772b2 .hgtags
--- a/.hgtags
+++ b/.hgtags
@@ -18,4 +18,4 @@
81fbe25bd02edcd53065e8e4476dd1dfb5a72cf2 latest_2013.11.04
2a756ca2cb1826db7796018e77d12e2dd7b67603 latest_2014.02.10
ca45b78adb4152fc6e7395514d46eba6b7d0b838 release_2014.08.11
-7e22f35798522100ff03e1fdd4eced962b292360 latest_2014.08.11
+109b170188e97fbfc2c998ec174aff9546dd1bd8 latest_2014.08.11
diff -r c4e19939b6a300c555a9fdab10b7372d8a8a73a1 -r
11e6f06278126edb16c6333e2eddf6dd1a9772b2 lib/galaxy/dataset_collections/structure.py
--- a/lib/galaxy/dataset_collections/structure.py
+++ b/lib/galaxy/dataset_collections/structure.py
@@ -35,9 +35,9 @@
return self._walk_collections( dict_map( lambda hdca: hdca.collection, hdca_dict
) )
def _walk_collections( self, collection_dict ):
- for ( identifier, substructure ) in self.children:
+ for index, ( identifier, substructure ) in enumerate( self.children ):
def element( collection ):
- return collection[ identifier ]
+ return collection[ index ]
if substructure.is_leaf:
yield dict_map( element, collection_dict )
diff -r c4e19939b6a300c555a9fdab10b7372d8a8a73a1 -r
11e6f06278126edb16c6333e2eddf6dd1a9772b2 lib/galaxy/web/base/controller.py
--- a/lib/galaxy/web/base/controller.py
+++ b/lib/galaxy/web/base/controller.py
@@ -27,7 +27,7 @@
from galaxy.web.form_builder import AddressField, CheckboxField, SelectField, TextArea,
TextField
from galaxy.web.form_builder import build_select_field, HistoryField, PasswordField,
WorkflowField, WorkflowMappingField
from galaxy.workflow.modules import module_factory, WorkflowModuleInjector,
MissingToolException
-from galaxy.model.orm import eagerload, eagerload_all, desc
+from galaxy.model.orm import eagerload, eagerload_all, desc, not_
from galaxy.security.validate_user_input import validate_publicname
from galaxy.util.sanitize_html import sanitize_html
from galaxy.model.item_attrs import Dictifiable, UsesAnnotations
@@ -2683,7 +2683,7 @@
item = self.get_item( trans, id )
if item:
# Only update slug if slug is not already in use.
- if trans.sa_session.query( item.__class__ ).filter_by( user=item.user,
slug=new_slug, importable=True ).count() == 0:
+ if trans.sa_session.query( item.__class__ ).filter_by( user=item.user,
slug=new_slug ).count() == 0:
item.slug = new_slug
trans.sa_session.flush()
@@ -2718,7 +2718,9 @@
# add integer to end.
new_slug = slug_base
count = 1
- while sa_session.query( item.__class__ ).filter_by( user=item.user,
slug=new_slug, importable=True ).count() != 0:
+ # Ensure unique across model class and user and don't include this item
+ # in the check in case it has previously been assigned a valid slug.
+ while sa_session.query( item.__class__ ).filter( item.__class__.user ==
item.user, item.__class__.slug == new_slug, item.__class__.id != item.id).count() != 0:
# Slug taken; choose a new slug based on count. This approach can
# handle numerous items with the same name gracefully.
new_slug = '%s-%i' % ( slug_base, count )
diff -r c4e19939b6a300c555a9fdab10b7372d8a8a73a1 -r
11e6f06278126edb16c6333e2eddf6dd1a9772b2 lib/galaxy/webapps/galaxy/api/libraries.py
--- a/lib/galaxy/webapps/galaxy/api/libraries.py
+++ b/lib/galaxy/webapps/galaxy/api/libraries.py
@@ -342,6 +342,7 @@
raise exceptions.InternalServerError( 'Error loading from the
database.' + str(e))
return role
+
@expose_api
def set_permissions( self, trans, encoded_library_id, **kwd ):
"""
@@ -385,7 +386,11 @@
action = kwd.get( 'action', None )
if action is None:
- raise exceptions.RequestParameterMissingException( 'The mandatory
parameter "action" is missing.' )
+ payload = kwd.get( 'payload', None )
+ if payload is not None:
+ return self.set_permissions_old( trans, library, payload, **kwd )
+ else:
+ raise exceptions.RequestParameterMissingException( 'The mandatory
parameter "action" is missing.' )
elif action == 'remove_restrictions':
trans.app.security_agent.make_library_public( library )
if not trans.app.security_agent.library_is_public( library ):
@@ -397,7 +402,6 @@
invalid_access_roles_names = []
for role_id in new_access_roles_ids:
role = self._load_role( trans, role_id )
- # Check whether role is in the set of allowed roles
valid_roles, total_roles = trans.app.security_agent.get_valid_roles(
trans, library, is_library_access=True )
if role in valid_roles:
valid_access_roles.append( role )
@@ -411,7 +415,6 @@
invalid_add_roles_names = []
for role_id in new_add_roles_ids:
role = self._load_role( trans, role_id )
- # Check whether role is in the set of allowed roles
valid_roles, total_roles = trans.app.security_agent.get_valid_roles(
trans, library )
if role in valid_roles:
valid_add_roles.append( role )
@@ -425,7 +428,6 @@
invalid_manage_roles_names = []
for role_id in new_manage_roles_ids:
role = self._load_role( trans, role_id )
- # Check whether role is in the set of allowed roles
valid_roles, total_roles = trans.app.security_agent.get_valid_roles(
trans, library )
if role in valid_roles:
valid_manage_roles.append( role )
@@ -439,7 +441,6 @@
invalid_modify_roles_names = []
for role_id in new_modify_roles_ids:
role = self._load_role( trans, role_id )
- # Check whether role is in the set of allowed roles
valid_roles, total_roles = trans.app.security_agent.get_valid_roles(
trans, library )
if role in valid_roles:
valid_modify_roles.append( role )
@@ -454,6 +455,9 @@
permissions.update( {
trans.app.security_agent.permitted_actions.LIBRARY_MODIFY : valid_modify_roles } )
trans.app.security_agent.set_all_library_permissions( trans, library,
permissions )
+ trans.sa_session.refresh( library )
+ # Copy the permissions to the root folder
+ trans.app.security_agent.copy_library_permissions( trans, library,
library.root_folder )
else:
raise exceptions.RequestParameterInvalidException( 'The mandatory
parameter "action" has an invalid value.'
'Allowed values are: "remove_restrictions",
set_permissions"' )
@@ -486,3 +490,25 @@
return dict( access_library_role_list=access_library_role_list,
modify_library_role_list=modify_library_role_list,
manage_library_role_list=manage_library_role_list,
add_library_item_role_list=add_library_item_role_list )
+ def set_permissions_old( self, trans, library, payload, **kwd ):
+ """
+ *** old implementation for backward compatibility ***
+
+ POST /api/libraries/{encoded_library_id}/permissions
+ Updates the library permissions.
+ """
+ params = galaxy.util.Params( payload )
+ permissions = {}
+ for k, v in trans.app.model.Library.permitted_actions.items():
+ role_params = params.get( k + '_in', [] )
+ in_roles = [ trans.sa_session.query( trans.app.model.Role ).get(
trans.security.decode_id( x ) ) for x in galaxy.util.listify( role_params ) ]
+ permissions[ trans.app.security_agent.get_action( v.action ) ] = in_roles
+ trans.app.security_agent.set_all_library_permissions( trans, library, permissions
)
+ trans.sa_session.refresh( library )
+ # Copy the permissions to the root folder
+ trans.app.security_agent.copy_library_permissions( trans, library,
library.root_folder )
+ message = "Permissions updated for library '%s'." %
library.name
+
+ item = library.to_dict( view='element', value_mapper={ 'id' :
trans.security.encode_id , 'root_folder_id' : trans.security.encode_id } )
+ return item
+
diff -r c4e19939b6a300c555a9fdab10b7372d8a8a73a1 -r
11e6f06278126edb16c6333e2eddf6dd1a9772b2 lib/galaxy/webapps/galaxy/api/permissions.py
--- a/lib/galaxy/webapps/galaxy/api/permissions.py
+++ /dev/null
@@ -1,52 +0,0 @@
-"""
-API operations on the permissions of a library.
-"""
-import logging, os, string, shutil, urllib, re, socket
-from cgi import escape, FieldStorage
-import galaxy.util
-from galaxy import util, datatypes, jobs, web
-from galaxy.web.base.controller import *
-from galaxy.util.sanitize_html import sanitize_html
-from galaxy.model.orm import *
-
-log = logging.getLogger( __name__ )
-
-
-class PermissionsController( BaseAPIController ):
-
- # Method not ideally named
- @web.expose_api
- def create( self, trans, library_id, payload, **kwd ):
- """
- POST /api/libraries/{encoded_library_id}/permissions
- Updates the library permissions.
- """
- if not trans.user_is_admin():
- trans.response.status = 403
- return "You are not authorized to update library permissions."
-
- params = galaxy.util.Params( payload )
- try:
- decoded_library_id = trans.security.decode_id( library_id )
- except TypeError:
- trans.response.status = 400
- return "Malformed library id ( %s ) specified, unable to decode." %
str( library_id )
-
- try:
- library = trans.sa_session.query( trans.app.model.Library ).get(
decoded_library_id )
- except:
- library = None
-
- permissions = {}
- for k, v in trans.app.model.Library.permitted_actions.items():
- role_params = params.get( k + '_in', [] )
- in_roles = [ trans.sa_session.query( trans.app.model.Role ).get(
trans.security.decode_id( x ) ) for x in galaxy.util.listify( role_params ) ]
- permissions[ trans.app.security_agent.get_action( v.action ) ] = in_roles
- trans.app.security_agent.set_all_library_permissions( trans, library, permissions
)
- trans.sa_session.refresh( library )
- # Copy the permissions to the root folder
- trans.app.security_agent.copy_library_permissions( trans, library,
library.root_folder )
- message = "Permissions updated for library '%s'." %
library.name
-
- item = library.to_dict( view='element', value_mapper={ 'id' :
trans.security.encode_id , 'root_folder_id' : trans.security.encode_id } )
- return item
diff -r c4e19939b6a300c555a9fdab10b7372d8a8a73a1 -r
11e6f06278126edb16c6333e2eddf6dd1a9772b2
static/scripts/mvc/collection/paired-collection-creator.js
--- a/static/scripts/mvc/collection/paired-collection-creator.js
+++ b/static/scripts/mvc/collection/paired-collection-creator.js
@@ -27,11 +27,14 @@
className : 'dataset paired',
initialize : function( attributes ){
+ //console.debug( 'PairView.initialize:', attributes );
this.pair = attributes.pair || {};
},
render : function(){
- this.$el.attr( 'draggable', true )
+ this.$el
+ .attr( 'draggable', true )
+ .data( 'pair', this.pair )
.html( _.template([
'<span class="forward-dataset-name
flex-column"><%= pair.forward.name %></span>',
'<span class="pair-name-column flex-column">',
@@ -40,7 +43,51 @@
'<span class="reverse-dataset-name
flex-column"><%= pair.reverse.name %></span>'
].join(''), { pair: this.pair }))
.addClass( 'flex-column-container' );
+
+//TODO: would be good to get the unpair-btn into this view - but haven't found a way
with css
+
return this;
+ },
+
+ events : {
+ 'dragstart' : '_dragstart',
+ 'dragend' : '_dragend',
+ 'dragover' : '_sendToParent',
+ 'drop' : '_sendToParent'
+ },
+
+ /** dragging pairs for re-ordering */
+ _dragstart : function( ev ){
+ //console.debug( this, '_dragstartPair', ev );
+ ev.currentTarget.style.opacity = '0.4';
+ if( ev.originalEvent ){ ev = ev.originalEvent; }
+
+ ev.dataTransfer.effectAllowed = 'move';
+ ev.dataTransfer.setData( 'text/plain', JSON.stringify( this.pair ) );
+
+ //ev.dataTransfer.setDragImage( null, 0, 0 );
+
+ // the canvas can be used to create the image
+ //ev.dataTransfer.setDragImage( canvasCrossHairs(), 25, 25 );
+
+ //console.debug( 'ev.dataTransfer:', ev.dataTransfer );
+ this.$el.parent().trigger( 'pair.dragstart', [ this ] );
+ },
+ /** dragging pairs for re-ordering */
+ _dragend : function( ev ){
+ //console.debug( this, '_dragendPair', ev );
+ ev.currentTarget.style.opacity = '1.0';
+ this.$el.parent().trigger( 'pair.dragend', [ this ] );
+ },
+
+ /** manually bubble up an event to the parent/container */
+ _sendToParent : function( ev ){
+ this.$el.parent().trigger( ev );
+ },
+
+ /** string rep */
+ toString : function(){
+ return 'PairView(' + this.pair.name + ')';
}
});
@@ -106,6 +153,9 @@
/** is the paired panel shown? */
this.pairedPanelHidden = false;
+ /** DOM elements currently being dragged */
+ this.$dragging = null;
+
this._dataSetUp();
this._setUpBehaviors();
@@ -929,8 +979,17 @@
'mousedown .flexible-partition-drag' :
'_startPartitionDrag',
// paired
'click .paired-columns .dataset.paired' : 'selectPair',
+ 'click .paired-columns' :
'clearSelectedPaired',
'click .paired-columns .pair-name' : '_clickPairName',
'click .unpair-btn' : '_clickUnpair',
+ // paired - drop target
+ //'dragenter .paired-columns' :
'_dragenterPairedColumns',
+ //'dragleave .paired-columns .column-datasets':
'_dragleavePairedColumns',
+ 'dragover .paired-columns .column-datasets' :
'_dragoverPairedColumns',
+ 'drop .paired-columns .column-datasets' :
'_dropPairedColumns',
+
+ 'pair.dragstart .paired-columns .column-datasets' :
'_pairDragstart',
+ 'pair.dragend .paired-columns .column-datasets' :
'_pairDragend',
// footer
'change .remove-extensions' : function( ev ){
this.toggleExtensions(); },
@@ -1226,9 +1285,15 @@
// ........................................................................ paired
/** select a pair when clicked */
selectPair : function( ev ){
+ ev.stopPropagation();
$( ev.currentTarget ).toggleClass( 'selected' );
},
+ /** deselect all pairs */
+ clearSelectedPaired : function( ev ){
+ this.$( '.paired-columns .dataset.selected' ).removeClass(
'selected' );
+ },
+
/** rename a pair when the pair name is clicked */
_clickPairName : function( ev ){
ev.stopPropagation();
@@ -1255,6 +1320,94 @@
this._unpair( this.paired[ pairIndex ] );
},
+ // ........................................................................ paired -
drag and drop re-ordering
+ //_dragenterPairedColumns : function( ev ){
+ // console.debug( '_dragenterPairedColumns:', ev );
+ //},
+ //_dragleavePairedColumns : function( ev ){
+ // //console.debug( '_dragleavePairedColumns:', ev );
+ //},
+ /** track the mouse drag over the paired list adding a placeholder to show where the
drop would occur */
+ _dragoverPairedColumns : function( ev ){
+ //console.debug( '_dragoverPairedColumns:', ev );
+ ev.preventDefault();
+
+ var $list = this.$( '.paired-columns .column-datasets' ),
+ offset = $list.offset();
+ //console.debug( ev.originalEvent.clientX, ev.originalEvent.clientY );
+ var $nearest = this._getNearestPairedDatasetLi( ev.originalEvent.clientY );
+ //console.debug( ev.originalEvent.clientX - offset.left, ev.originalEvent.clientY
- offset.top );
+
+ $( '.paired-drop-placeholder' ).remove();
+ var $placeholder = $( '<div
class="paired-drop-placeholder"></div>')
+ if( !$nearest.size() ){
+ $list.append( $placeholder );
+ } else {
+ $nearest.before( $placeholder );
+ }
+ },
+ /** get the nearest *previous* paired dataset PairView based on the mouse's Y
coordinate.
+ * If the y is at the end of the list, return an empty jQuery object.
+ */
+ _getNearestPairedDatasetLi : function( y ){
+ var WIGGLE = 4,
+ lis = this.$( '.paired-columns .column-datasets li' ).toArray();
+//TODO: better way?
+ for( var i=0; i<lis.length; i++ ){
+ var $li = $( lis[i] ),
+ top = $li.offset().top,
+ halfHeight = Math.floor( $li.outerHeight() / 2 ) + WIGGLE;
+ if( top + halfHeight > y && top - halfHeight < y ){
+ //console.debug( y, top + halfHeight, top - halfHeight )
+ return $li;
+ }
+ }
+ return $();
+ },
+ /** drop (dragged/selected PairViews) onto the list, re-ordering both the DOM and the
internal array of pairs */
+ _dropPairedColumns : function( ev ){
+ // both required for firefox
+ ev.preventDefault();
+ ev.dataTransfer.dropEffect = 'move';
+
+ var $nearest = this._getNearestPairedDatasetLi( ev.originalEvent.clientY );
+ if( $nearest.size() ){
+ this.$dragging.insertBefore( $nearest );
+
+ } else {
+ // no nearest before - insert after last element (unpair button)
+ this.$dragging.insertAfter( this.$( '.paired-columns .unpair-btn'
).last() );
+ }
+ // resync the creator's list of paired based on the new DOM order
+ this._syncPairsToDom();
+ return false;
+ },
+ /** resync the creator's list of paired based on the DOM order of pairs */
+ _syncPairsToDom : function(){
+ var newPaired = [];
+//TODO: ugh
+ this.$( '.paired-columns .dataset.paired' ).each( function(){
+ newPaired.push( $( this ).data( 'pair' ) );
+ });
+ //console.debug( newPaired );
+ this.paired = newPaired;
+ this._renderPaired();
+ },
+ /** drag communication with pair sub-views: dragstart */
+ _pairDragstart : function( ev, pair ){
+ //console.debug( '_pairDragstart', ev, pair )
+ // auto select the pair causing the event and move all selected
+ pair.$el.addClass( 'selected' );
+ var $selected = this.$( '.paired-columns .dataset.selected' );
+ this.$dragging = $selected;
+ },
+ /** drag communication with pair sub-views: dragend - remove the placeholder */
+ _pairDragend : function( ev, pair ){
+ //console.debug( '_pairDragend', ev, pair )
+ $( '.paired-drop-placeholder' ).remove();
+ this.$dragging = null;
+ },
+
// ........................................................................ footer
toggleExtensions : function( force ){
var creator = this;
diff -r c4e19939b6a300c555a9fdab10b7372d8a8a73a1 -r
11e6f06278126edb16c6333e2eddf6dd1a9772b2 static/scripts/mvc/tools/tools-form.js
--- a/static/scripts/mvc/tools/tools-form.js
+++ b/static/scripts/mvc/tools/tools-form.js
@@ -1,8 +1,8 @@
define(['mvc/ui/ui-portlet', 'mvc/ui/ui-misc',
'mvc/citation/citation-model', 'mvc/citation/citation-view',
- 'mvc/tools', 'mvc/tools/tools-template',
'mvc/tools/tools-datasets', 'mvc/tools/tools-section'],
+ 'mvc/tools', 'mvc/tools/tools-template',
'mvc/tools/tools-datasets', 'mvc/tools/tools-section',
'mvc/tools/tools-tree'],
function(Portlet, Ui, CitationModel, CitationView,
- Tools, ToolTemplate, ToolDatasets, ToolSection) {
+ Tools, ToolTemplate, ToolDatasets, ToolSection, ToolTree) {
// create tool model
var Model = Backbone.Model.extend({
@@ -29,6 +29,18 @@
id : options.id
});
+ // creates a tree/json structure from the input form
+ this.tree = new ToolTree(this);
+
+ // reset field list
+ this.field_list = {};
+
+ // reset sequential input definition list
+ this.input_list = {};
+
+ // create data model
+ this.data = new Backbone.Model();
+
// initialize datasets
this.datasets = new ToolDatasets({
success: function() {
@@ -39,13 +51,6 @@
// initialize tool form
_initializeToolForm: function() {
-
- // reset field list
- this.field_list = {};
-
- // reset sequential input definition list
- this.inputs_sequential = {};
-
// fetch model and render form
var self = this;
this.model.fetch({
@@ -67,6 +72,7 @@
title : 'Execute',
floating : 'clear',
onclick : function() {
+ console.log(self.tree.create(self));
}
})
}
@@ -107,8 +113,25 @@
// append tool section
self.portlet.append(self.section.$el);
+
+ // trigger refresh
+ self.refresh();
}
});
+ },
+
+ // refresh
+ refresh: function() {
+ // recreate tree structure
+ this.tree.refresh();
+
+ // trigger change
+ for (var id in this.field_list) {
+ this.field_list[id].trigger('change');
+ }
+
+ // log
+ console.debug('tools-form::refresh() - Recreated tree structure.
Refresh.');
}
});
diff -r c4e19939b6a300c555a9fdab10b7372d8a8a73a1 -r
11e6f06278126edb16c6333e2eddf6dd1a9772b2 static/scripts/mvc/tools/tools-section.js
--- a/static/scripts/mvc/tools/tools-section.js
+++ b/static/scripts/mvc/tools/tools-section.js
@@ -1,4 +1,5 @@
-define(['mvc/ui/ui-table', 'mvc/ui/ui-misc', 'mvc/ui/ui-tabs'],
function(Table, Ui, Tabs) {
+define(['utils/utils', 'mvc/ui/ui-table', 'mvc/ui/ui-misc',
'mvc/ui/ui-tabs'],
+ function(Utils, Table, Ui, Tabs) {
// create form view
var View = Backbone.View.extend({
@@ -13,6 +14,13 @@
// link datasets
this.datasets = app.datasets;
+ // link data model
+ this.data = app.data;
+
+ // add table class for tr tag
+ // this assist in transforming the form into a json structure
+ options.cls_tr = 'form-row';
+
// create table
this.table = new Table.View(options);
@@ -28,98 +36,155 @@
// reset table
this.table.delAll();
- // model
- var data = new Backbone.Model();
-
// load settings elements into table
- for (var id in this.inputs) {
- this._add(this.inputs[id], data);
- }
-
- // trigger change
- for (var id in this.app.field_list) {
- this.app.field_list[id].trigger('change');
+ for (var i in this.inputs) {
+ this._add(this.inputs[i], this.data);
}
},
// add table row
- _add: function(inputs_def, data) {
+ _add: function(input, data) {
// link this
var self = this;
+ // clone definition
+ var input_def = jQuery.extend(true, {}, input);
+
+ // create unique id
+ input_def.id = Utils.uuid();
+
+ // add to sequential list of inputs
+ this.app.input_list[input_def.id] = input_def;
+
// identify field type
- var type = inputs_def.type;
+ var type = input_def.type;
switch(type) {
// conditional field
case 'conditional':
- // add label to input definition root
- inputs_def.label = inputs_def.test_param.label;
-
- // add id to input definition root
- inputs_def.name = inputs_def.test_param.name;
-
- // build options field
- this._addRow('conditional', inputs_def, data);
-
- // add fields
- for (var i in inputs_def.cases) {
- // create sub section
- var sub_section = new View(this.app, {
- inputs : inputs_def.cases[i].inputs,
- cls : 'ui-table-plain'
- });
-
- // append sub section
- this.table.add('');
- this.table.add(sub_section.$el);
- this.table.append(inputs_def.name + '_formsection_' +
i);
- }
+ this._addConditional(input_def, data);
break;
// repeat block
case 'repeat':
- // create tab field
- var tabs = new Tabs.View({
- title_new : 'Add Group',
- onnew : function() {
- // create sub section
- var sub_section = new View(self.app, {
- inputs : inputs_def.inputs,
- cls : 'ui-table-plain'
- });
+ this._addRepeat(input_def);
+ break;
+ // default single element row
+ default:
+ this._addRow(type, input_def, data);
+ }
+ },
+
+ // add conditional block
+ _addConditional: function(input_def, data) {
+ // add label to input definition root
+ input_def.label = input_def.test_param.label;
+
+ // add value to input definition root
+ input_def.value = input_def.test_param.value;
+
+ // build options field
+ this._addRow('conditional', input_def, data);
+
+ // add fields
+ for (var i in input_def.cases) {
+ // create id tag
+ var sub_section_id = input_def.id + '-section-' + i;
+
+ // create sub section
+ var sub_section = new View(this.app, {
+ inputs : input_def.cases[i].inputs,
+ cls : 'ui-table-plain'
+ });
+
+ // append sub section
+ this.table.add('');
+ this.table.add(sub_section.$el);
+ this.table.append(sub_section_id);
+ }
+ },
+
+ // add repeat block
+ _addRepeat: function(input_def) {
+ // link this
+ var self = this;
+
+ //
+ // create tab field
+ //
+ var tabs = new Tabs.View({
+ title_new : 'Add ' + input_def.title,
+ max : input_def.max,
+ onnew : function() {
+ // create id tag
+ var sub_section_id = input_def.id + '-section-' +
Utils.uuid();
+
+ // create sub section
+ var sub_section = new View(self.app, {
+ inputs : input_def.inputs,
+ cls : 'ui-table-plain'
+ });
+
+ // add new tab
+ tabs.add({
+ id : sub_section_id,
+ title : input_def.title,
+ $el : sub_section.$el,
+ ondel : function() {
+ // delete tab
+ tabs.del(sub_section_id);
- // create id tag
- var sub_section_id = inputs_def.name +
'_formsection_' + tabs.size();
-
- // add new tab
- tabs.add({
- id : sub_section_id,
- title : 'Repeat',
- $el : sub_section.$el,
- ondel : function() {
- tabs.del(sub_section_id);
- }
- });
+ // retitle tabs
+ tabs.retitle(input_def.title);
- // show tab
- tabs.show(sub_section_id);
+ // trigger refresh
+ self.app.refresh();
}
});
- // append sub section
- this.table.add(inputs_def.title);
- this.table.add(tabs.$el);
- this.table.append(inputs_def.name);
- break;
- // default single element row
- default:
- this._addRow(type, inputs_def, data);
+ // retitle tabs
+ tabs.retitle(input_def.title);
+
+ // show tab
+ tabs.show(sub_section_id);
+
+ // trigger refresh
+ self.app.refresh();
+ }
+ });
+
+ //
+ // add min number of tabs
+ //
+ for (var i = 0; i < input_def.min; i++) {
+ // create id tag
+ var sub_section_id = input_def.id + '-section-' + Utils.uuid();
+
+ // create sub section
+ var sub_section = new View(self.app, {
+ inputs : input_def.inputs,
+ cls : 'ui-table-plain'
+ });
+
+ // add tab
+ tabs.add({
+ id : sub_section_id,
+ title : input_def.title,
+ $el : sub_section.$el
+ });
}
+
+ // retitle tabs
+ tabs.retitle(input_def.title);
+
+ // append sub section
+ this.table.add('');
+ this.table.add(tabs.$el);
+ this.table.append(input_def.id);
},
// add table row
- _addRow: function(field_type, inputs_def, data) {
+ _addRow: function(field_type, input_def, data) {
// get id
- var id = inputs_def.name;
+ var id = input_def.id;
// field wrapper
var field = null;
@@ -128,37 +193,42 @@
switch(field_type) {
// text input field
case 'text' :
- field = this._field_text(inputs_def, data);
+ field = this._field_text(input_def, data);
break;
// select field
case 'select' :
- field = this._field_select(inputs_def, data);
+ field = this._field_select(input_def, data);
break;
// radiobox field
case 'radiobutton' :
- field = this._field_radio(inputs_def, data);
+ field = this._field_radio(input_def, data);
break;
// dataset
case 'data':
- field = this._field_data(inputs_def, data);
+ field = this._field_data(input_def, data);
break;
// dataset column
case 'data_column':
- field = this._field_column(inputs_def, data);
+ field = this._field_column(input_def, data);
break;
// text area field
case 'textarea' :
- field = this._field_textarea(inputs_def, data);
+ field = this._field_textarea(input_def, data);
break;
// conditional select field
case 'conditional':
- field = this._field_conditional(inputs_def, data);
+ field = this._field_conditional(input_def, data);
+ break;
+
+ // hidden field
+ case 'hidden':
+ field = this._field_hidden(input_def, data);
break;
}
@@ -170,68 +240,37 @@
// set value
if (!data.get(id)) {
- data.set(id, inputs_def.value);
+ data.set(id, input_def.value);
}
field.value(data.get(id));
// add to field list
this.app.field_list[id] = field;
- // add to input definition into sequential list
- this.app.inputs_sequential[id] = inputs_def;
-
// combine field and info
var $input = $('<div/>');
$input.append(field.$el);
- if (inputs_def.help) {
- $input.append('<div class="ui-table-form-info">'
+ inputs_def.help + '</div>');
+ if (input_def.help) {
+ $input.append('<div class="ui-table-form-info">'
+ input_def.help + '</div>');
}
- // add row to table
- this.table.add('<span class="ui-table-form-title">' +
inputs_def.label + '</span>', '25%');
+ // create table row
+ this.table.add('<span class="ui-table-form-title">' +
input_def.label + '</span>', '20%');
this.table.add($input);
- // add to table
+ // append to table
this.table.append(id);
-
- // show/hide
- if (inputs_def.hide) {
- this.table.get(id).hide();
- }
- },
-
- // text input field
- _field_text : function(inputs_def, data) {
- var id = inputs_def.name;
- return new Ui.Input({
- id : 'field-' + id,
- value : data.get(id),
- onchange : function(value) {
- data.set(id, value);
- }
- });
- },
-
- // text area
- _field_textarea : function(inputs_def, data) {
- var id = inputs_def.name;
- return new Ui.Textarea({
- id : 'field-' + id,
- onchange : function() {
- data.set(id, field.value());
- }
- });
},
// conditional input field
- _field_conditional : function(inputs_def, data) {
+ _field_conditional : function(input_def, data) {
// link this
var self = this;
// configure options fields
var options = [];
- for (var i in inputs_def.test_param.options) {
- var option = inputs_def.test_param.options[i];
+ for (var i in input_def.test_param.options) {
+ var option = input_def.test_param.options[i];
options.push({
label: option[0],
value: option[1]
@@ -239,7 +278,7 @@
}
// select field
- var id = inputs_def.name;
+ var id = input_def.id;
return new Ui.Select.View({
id : 'field-' + id,
data : options,
@@ -249,19 +288,29 @@
data.set(id, value);
// check value in order to hide/show options
- for (var i in inputs_def.cases) {
+ for (var i in input_def.cases) {
// get case
- var case_def = inputs_def.cases[i];
+ var case_def = input_def.cases[i];
// identify subsection name
- var section_id = inputs_def.name + '_formsection_' + i;
-
+ var section_id = input_def.id + '-section-' + i;
+
// identify row
var section_row = self.table.get(section_id);
- // check
- if (case_def.value == value) {
- section_row.show();
+ // check if non-hidden elements exist
+ var nonhidden = false;
+ for (var j in case_def.inputs) {
+ var type = case_def.inputs[j].type;
+ if (type && type !== 'hidden') {
+ nonhidden = true;
+ break;
+ }
+ }
+
+ // show/hide sub form
+ if (case_def.value == value && nonhidden) {
+ section_row.fadeIn('fast');
} else {
section_row.hide();
}
@@ -271,12 +320,12 @@
},
// data input field
- _field_data : function(inputs_def, data) {
+ _field_data : function(input_def, data) {
// link this
var self = this;
// get element id
- var id = inputs_def.name;
+ var id = input_def.id;
// get datasets
var datasets = this.datasets.filterType();
@@ -299,11 +348,8 @@
// update value
data.set(id, value);
- // find referenced columns
- var column_list = _.where(self.app.inputs_sequential, {
- data_ref : id,
- type : 'data_column'
- });
+ // get referenced columns
+ var column_list = self.app.tree.findReferences(id);
// find selected dataset
var dataset = self.datasets.filter(value);
@@ -333,10 +379,12 @@
// update referenced columns
for (var i in column_list) {
- var column_field = self.app.field_list[column_list[i].name]
+ var column_field = self.app.field_list[column_list[i]]
if (column_field) {
column_field.update(columns);
- column_field.value(column_field.first());
+ if (!column_field.exists(column_field.value())) {
+ column_field.value(column_field.first());
+ }
}
}
} else {
@@ -348,8 +396,8 @@
},
// column selection field
- _field_column : function (inputs_def, data) {
- var id = inputs_def.name;
+ _field_column : function (input_def, data) {
+ var id = input_def.id;
return new Ui.Select.View({
id : 'field-' + id,
value : data.get(id),
@@ -360,11 +408,11 @@
},
// select field
- _field_select : function (inputs_def, data) {
+ _field_select : function (input_def, data) {
// configure options fields
var options = [];
- for (var i in inputs_def.options) {
- var option = inputs_def.options[i];
+ for (var i in input_def.options) {
+ var option = input_def.options[i];
options.push({
label: option[0],
value: option[1]
@@ -373,12 +421,12 @@
// identify display type
var SelectClass = Ui.Select;
- if (inputs_def.display == 'checkboxes') {
+ if (input_def.display == 'checkboxes') {
SelectClass = Ui.Checkbox;
}
// select field
- var id = inputs_def.name;
+ var id = input_def.id;
return new SelectClass.View({
id : 'field-' + id,
data : options,
@@ -389,17 +437,49 @@
});
},
- // radio field
- _field_radio : function(inputs_def, data) {
- var id = inputs_def.name;
- return new Ui.RadioButton({
+ // text input field
+ _field_text : function(input_def, data) {
+ var id = input_def.id;
+ return new Ui.Input({
id : 'field-' + id,
- data : inputs_def.data,
value : data.get(id),
onchange : function(value) {
data.set(id, value);
}
});
+ },
+
+ // text area
+ _field_textarea : function(input_def, data) {
+ var id = input_def.id;
+ return new Ui.Textarea({
+ id : 'field-' + id,
+ onchange : function() {
+ data.set(id, field.value());
+ }
+ });
+ },
+
+ // radio field
+ _field_radio : function(input_def, data) {
+ var id = input_def.id;
+ return new Ui.RadioButton({
+ id : 'field-' + id,
+ data : input_def.data,
+ value : data.get(id),
+ onchange : function(value) {
+ data.set(id, value);
+ }
+ });
+ },
+
+ // hidden field
+ _field_hidden : function(input_def, data) {
+ var id = input_def.id;
+ return new Ui.Hidden({
+ id : 'field-' + id,
+ value : data.get(id)
+ });
}
});
diff -r c4e19939b6a300c555a9fdab10b7372d8a8a73a1 -r
11e6f06278126edb16c6333e2eddf6dd1a9772b2 static/scripts/mvc/tools/tools-tree.js
--- /dev/null
+++ b/static/scripts/mvc/tools/tools-tree.js
@@ -0,0 +1,142 @@
+// dependencies
+define([], function() {
+
+// tool form tree
+return Backbone.Model.extend({
+ // initialize
+ initialize: function(app) {
+ // link app
+ this.app = app;
+ },
+
+ // creates tree structure
+ refresh: function() {
+ // check if section is available
+ if (!this.app.section) {
+ return {};
+ }
+
+ // create dictionary
+ this.dict = {};
+
+ // create xml object
+ this.xml = $('<div/>');
+
+ // fill dictionary
+ this._iterate(this.app.section.$el, this.dict, this.xml);
+ },
+
+ // iterate
+ _iterate: function(parent, dict, xml) {
+ // get child nodes
+ var self = this;
+ var children = $(parent).children();
+ children.each(function() {
+ // get child element
+ var child = this;
+
+ // get id
+ var id = $(child).attr('id');
+
+ // create new branch
+ if ($(child).hasClass('form-row') ||
$(child).hasClass('tab-pane')) {
+ // create sub dictionary
+ dict[id] = {};
+
+ // add input element if it exists
+ var input = self.app.input_list[id];
+ if (input) {
+ dict[id] = {
+ input : input
+ }
+ }
+
+ // create xml element
+ var $el = $('<div id="' + id + '"/>');
+
+ // append xml
+ xml.append($el);
+
+ // fill sub dictionary
+ self._iterate(child, dict[id], $el);
+ } else {
+ self._iterate(child, dict, xml);
+ }
+ });
+ },
+
+ // find referenced elements
+ findReferences: function(identifier) {
+ // referenced elements
+ var referenced = [];
+
+ // link this
+ var self = this;
+
+ // iterate
+ function search (name, parent) {
+ // get child nodes
+ var children = $(parent).children();
+
+ // create list of referenced elements
+ var list = [];
+
+ // a node level is skipped if a reference of higher priority was found
+ var skip = false;
+
+ // verify that hierarchy level is referenced by target identifier
+ children.each(function() {
+ // get child element
+ var child = this;
+
+ // get id
+ var id = $(child).attr('id');
+
+ // skip target element
+ if (id !== identifier) {
+ // get input element
+ var input = self.app.input_list[id];
+ if (input) {
+ // check for new reference definition with higher priority
+ if (input.name == name) {
+ // skip iteration for this branch
+ skip = true;
+ return false;
+ }
+
+ // check for referenced element
+ if (input.data_ref == name) {
+ list.push(id);
+ }
+ }
+ }
+ });
+
+ // skip iteration
+ if (!skip) {
+ // merge temporary list with result
+ referenced = referenced.concat(list);
+
+ // continue iteration
+ children.each(function() {
+ search(name, this);
+ });
+ }
+ }
+
+ // get initial node
+ var node = this.xml.find('#' + identifier);
+ if (node.length > 0) {
+ // get parent input element
+ var input = this.app.input_list[identifier];
+ if (input) {
+ search(input.name, node.parent());
+ }
+ }
+
+ // return
+ return referenced;
+ }
+});
+
+});
\ No newline at end of file
diff -r c4e19939b6a300c555a9fdab10b7372d8a8a73a1 -r
11e6f06278126edb16c6333e2eddf6dd1a9772b2 static/scripts/mvc/ui.js
--- a/static/scripts/mvc/ui.js
+++ b/static/scripts/mvc/ui.js
@@ -574,6 +574,8 @@
self.show = function( msg, speed, callback ){
msg = msg || 'loading...';
speed = speed || 'fast';
+ // remove previous
+ $where.parent().find( '.loading-indicator' ).remove();
// since position is fixed - we insert as sibling
self.$indicator = render().insertBefore( $where );
self.message( msg );
diff -r c4e19939b6a300c555a9fdab10b7372d8a8a73a1 -r
11e6f06278126edb16c6333e2eddf6dd1a9772b2 static/scripts/mvc/ui/ui-misc.js
--- a/static/scripts/mvc/ui/ui-misc.js
+++ b/static/scripts/mvc/ui/ui-misc.js
@@ -409,6 +409,35 @@
}
});
+// plugin
+var Hidden = Backbone.View.extend({
+ // options
+ optionsDefault: {
+ value : ''
+ },
+
+ // initialize
+ initialize : function(options) {
+ // configure options
+ this.options = Utils.merge(options, this.optionsDefault);
+
+ // create new element
+ this.setElement(this._template(this.options));
+ },
+
+ // value
+ value : function (new_val) {
+ if (new_val !== undefined) {
+ this.$el.val(new_val);
+ }
+ return this.$el.val();
+ },
+
+ // element
+ _template: function(options) {
+ return '<hidden id="' + options.id + '"
value="' + options.value + '"/>';
+ }
+});
// return
return {
@@ -426,6 +455,7 @@
Checkbox : Checkbox,
Searchbox : Searchbox,
Select : Select,
- Textarea : Textarea
+ Textarea : Textarea,
+ Hidden : Hidden
}
});
diff -r c4e19939b6a300c555a9fdab10b7372d8a8a73a1 -r
11e6f06278126edb16c6333e2eddf6dd1a9772b2 static/scripts/mvc/ui/ui-table.js
--- a/static/scripts/mvc/ui/ui-table.js
+++ b/static/scripts/mvc/ui/ui-table.js
@@ -17,7 +17,8 @@
onchange : null,
ondblclick : null,
onconfirm : null,
- cls : 'ui-table'
+ cls : 'ui-table',
+ cls_tr : ''
},
// events
@@ -43,7 +44,7 @@
this.setElement($el);
// initialize row
- this.row = $('<tr></tr>');
+ this.row = this._row();
},
// add header cell
@@ -156,13 +157,18 @@
}
// row
- this.row = $('<tr></tr>');
+ this.row = this._row();
// row count
this.row_count++;
this._refresh();
},
+ // create new row
+ _row: function() {
+ return $('<tr class="' + this.options.cls_tr +
'"></tr>');
+ },
+
// onclick
_onclick: function(e) {
// get values
diff -r c4e19939b6a300c555a9fdab10b7372d8a8a73a1 -r
11e6f06278126edb16c6333e2eddf6dd1a9772b2 static/scripts/mvc/ui/ui-tabs.js
--- a/static/scripts/mvc/ui/ui-tabs.js
+++ b/static/scripts/mvc/ui/ui-tabs.js
@@ -7,7 +7,9 @@
optionsDefault: {
title_new : '',
operations : null,
- onnew : null
+ onnew : null,
+ min : null,
+ max : null
},
// initialize
@@ -96,12 +98,17 @@
this.$content.append($tab_content);
// activate this tab if this is the first tab
- if (_.size(this.list) == 1) {
+ if (this.size() == 1) {
$tab_title.addClass('active');
$tab_content.addClass('active');
this.first_tab = id;
}
+ // hide add tab
+ if (this.options.max && this.size() >= this.options.max) {
+ this.$el.find('#new-tab').hide();
+ }
+
// add click event to remove tab
if (options.ondel) {
var $del_icon = $tab_title.find('#delete');
@@ -132,7 +139,7 @@
del: function(id) {
// delete tab from dom
this.$el.find('#tab-' + id).remove();
- this.$el.find('#tab-content-' + id).remove();
+ this.$el.find('#' + id).remove();
// check if first tab has been deleted
if (this.first_tab == id) {
@@ -143,14 +150,22 @@
if (this.first_tab != null) {
this.show(this.first_tab);
}
+
+ // delete from list
+ if (this.list[id]) {
+ delete this.list[id];
+ }
+
+ // show add tab
+ if (this.size() < this.options.max) {
+ this.$el.find('#new-tab').show();
+ }
},
// delete tab
delRemovable: function() {
for (var id in this.list) {
- if (this.list[id]) {
- this.del(id);
- }
+ this.del(id);
}
},
@@ -165,7 +180,7 @@
this.$el.find('.tab-element').removeClass('active');
this.$el.find('.tab-pane').removeClass('active');
this.$el.find('#tab-' + id).addClass('active');
- this.$el.find('#tab-content-' + id).addClass('active');
+ this.$el.find('#' + id).addClass('active');
}
},
@@ -201,6 +216,14 @@
return $el.html();
},
+ // retitle
+ retitle: function(new_title) {
+ var index = 0;
+ for (var id in this.list) {
+ this.title(id, ++index + ': ' + new_title);
+ }
+ },
+
// fill template
_template: function(options) {
return '<div class="ui-tabs tabbable tabs-left">' +
@@ -224,8 +247,8 @@
// fill template tab
_template_tab: function(options) {
var tmpl = '<li id="tab-' + options.id + '"
class="tab-element">' +
- '<a id="tab-title-link-' + options.id +
'" title="" href="#tab-content-' + options.id + '"
data-original-title="">' +
- '<span id="tab-title-text-' + options.id +
'">' + options.title + '</span>';
+ '<a id="tab-title-link-' + options.id +
'" title="" href="#' + options.id + '"
data-original-title="">' +
+ '<span id="tab-title-text-' + options.id +
'" class="tab-title-text">' + options.title +
'</span>';
if (options.ondel) {
tmpl += '<i id="delete" class="ui-tabs-delete
fa fa-minus-circle"/>';
@@ -239,7 +262,7 @@
// fill template tab content
_template_tab_content: function(options) {
- return '<div id="tab-content-' + options.id + '"
class="tab-pane"/>';
+ return '<div id="' + options.id + '"
class="tab-pane"/>';
}
});
diff -r c4e19939b6a300c555a9fdab10b7372d8a8a73a1 -r
11e6f06278126edb16c6333e2eddf6dd1a9772b2
static/scripts/packed/mvc/collection/paired-collection-creator.js
--- a/static/scripts/packed/mvc/collection/paired-collection-creator.js
+++ b/static/scripts/packed/mvc/collection/paired-collection-creator.js
@@ -1,1 +1,1 @@
-define(["utils/levenshtein","mvc/base-mvc","utils/localization"],function(g,a,d){var
f=Backbone.View.extend(a.LoggableMixin).extend({tagName:"li",className:"dataset
paired",initialize:function(h){this.pair=h.pair||{}},render:function(){this.$el.attr("draggable",true).html(_.template(['<span
class="forward-dataset-name flex-column"><%= pair.forward.name
%></span>','<span class="pair-name-column
flex-column">','<span class="pair-name"><%= pair.name
%></span>',"</span>",'<span
class="reverse-dataset-name flex-column"><%= pair.reverse.name
%></span>'].join(""),{pair:this.pair})).addClass("flex-column-container");return
this}});var
e=Backbone.View.extend(a.LoggableMixin).extend({className:"collection-creator
flex-row-container",initialize:function(h){h=_.defaults(h,{datasets:[],filters:this.DEFAULT_FILTERS,automaticallyPair:true,matchPercentage:1,strategy:"lcs"});this.initialList=h.datasets;this.historyId=h.historyId;this.filters=this.commonFilters[h.filters]||this.commonFilters[this.DEFAULT_FILTERS];if(_.isArray(h.filters)){this.filters=h.filters}this.automaticallyPair=h.automaticallyPair;this.matchPercentage=h.matchPercentage;this.strategy=this.strategies[h.strategy]||this.strategies[this.DEFAULT_STRATEGY];if(_.isFunction(h.strategy)){this.strategy=h.strategy}this.removeExtensions=true;this.oncancel=h.oncancel;this.oncreate=h.oncreate;this.unpairedPanelHidden=false;this.pairedPanelHidden=false;this._dataSetUp();this._setUpBehaviors()},commonFilters:{none:["",""],illumina:["_1","_2"]},DEFAULT_FILTERS:"illumina",strategies:{lcs:"autoPairLCSs",levenshtein:"autoPairLevenshtein"},DEFAULT_STRATEGY:"lcs",_dataSetUp:function(){this.paired=[];this.unpaired=[];this.selectedIds=[];this._sortInitialList();this._ensureIds();this.unpaired=this.initialList.slice(0);if(this.automaticallyPair){this.autoPair()}},_sortInitialList:function(){this._sortDatasetList(this.initialList)},_sortDatasetList:function(h){h.sort(function(j,i){return
naturalSort(j.name,i.name)});return
h},_ensureIds:function(){this.initialList.forEach(function(h){if(!h.hasOwnProperty("id")){h.id=_.uniqueId()}});return
this.initialList},_splitByFilters:function(j){var
i=[],h=[];this.unpaired.forEach(function(k){if(this._filterFwdFn(k)){i.push(k)}if(this._filterRevFn(k)){h.push(k)}}.bind(this));return[i,h]},_filterFwdFn:function(i){var
h=new RegExp(this.filters[0]);return h.test(i.name)},_filterRevFn:function(i){var h=new
RegExp(this.filters[1]);return h.test(i.name)},_addToUnpaired:function(i){var
h=function(j,l){if(j===l){return j}var
k=Math.floor((l-j)/2)+j,m=naturalSort(i.name,this.unpaired[k].name);if(m<0){return
h(j,k)}else{if(m>0){return
h(k+1,l)}}while(this.unpaired[k]&&this.unpaired[k].name===i.name){k++}return
k}.bind(this);this.unpaired.splice(h(0,this.unpaired.length),0,i)},autoPair:function(h){h=h||this.strategy;this.simpleAutoPair();return
this[h].call(this)},simpleAutoPair:function(){var
n=0,l,r=this._splitByFilters(),h=r[0],q=r[1],p,s,k=false;while(n<h.length){var
m=h[n];p=m.name.replace(this.filters[0],"");k=false;for(l=0;l<q.length;l++){var
o=q[l];s=o.name.replace(this.filters[1],"");if(m!==o&&p===s){k=true;this._pair(h.splice(n,1)[0],q.splice(l,1)[0],{silent:true});break}}if(!k){n+=1}}},autoPairLevenshtein:function(){var
o=0,m,t=this._splitByFilters(),h=t[0],r=t[1],q,v,k,s,l;while(o<h.length){var
n=h[o];q=n.name.replace(this.filters[0],"");l=Number.MAX_VALUE;for(m=0;m<r.length;m++){var
p=r[m];v=p.name.replace(this.filters[1],"");if(n!==p){if(q===v){s=m;l=0;break}k=levenshteinDistance(q,v);if(k<l){s=m;l=k}}}var
u=1-(l/(Math.max(q.length,v.length)));if(u>=this.matchPercentage){this._pair(h.splice(o,1)[0],r.splice(s,1)[0],{silent:true});if(h.length<=0||r.length<=0){return}}else{o+=1}}},autoPairLCSs:function(){var
m=0,k,t=this._splitByFilters(),h=t[0],r=t[1],q,w,v,s,o;if(!h.length||!r.length){return}while(m<h.length){var
l=h[m];q=l.name.replace(this.filters[0],"");o=0;for(k=0;k<r.length;k++){var
p=r[k];w=p.name.replace(this.filters[1],"");if(l!==p){if(q===w){s=k;o=q.length;break}var
n=this._naiveStartingAndEndingLCS(q,w);v=n.length;if(v>o){s=k;o=v}}}var
u=o/(Math.min(q.length,w.length));if(u>=this.matchPercentage){this._pair(h.splice(m,1)[0],r.splice(s,1)[0],{silent:true});if(h.length<=0||r.length<=0){return}}else{m+=1}}},_naiveStartingAndEndingLCS:function(m,k){var
n="",o="",l=0,h=0;while(l<m.length&&l<k.length){if(m[l]!==k[l]){break}n+=m[l];l+=1}if(l===m.length){return
m}if(l===k.length){return
k}l=(m.length-1);h=(k.length-1);while(l>=0&&h>=0){if(m[l]!==k[h]){break}o=[m[l],o].join("");l-=1;h-=1}return
n+o},_pair:function(j,h,i){i=i||{};var
k=this._createPair(j,h,i.name);this.paired.push(k);this.unpaired=_.without(this.unpaired,j,h);if(!i.silent){this.trigger("pair:new",k)}return
k},_createPair:function(j,h,i){if(!(j&&h)||(j===h)){throw new Error("Bad
pairing:
"+[JSON.stringify(j),JSON.stringify(h)])}i=i||this._guessNameForPair(j,h);return{forward:j,name:i,reverse:h}},_guessNameForPair:function(j,h,k){k=(k!==undefined)?(k):(this.removeExtensions);var
i=this._naiveStartingAndEndingLCS(j.name.replace(this.filters[0],""),h.name.replace(this.filters[1],""));if(k){var
l=i.lastIndexOf(".");if(l>0){i=i.slice(0,l)}}return i||(j.name+" &
"+h.name)},_unpair:function(i,h){h=h||{};if(!i){throw new Error("Bad pair:
"+JSON.stringify(i))}this.paired=_.without(this.paired,i);this._addToUnpaired(i.forward);this._addToUnpaired(i.reverse);if(!h.silent){this.trigger("pair:unpair",[i])}return
i},unpairAll:function(){var
h=[];while(this.paired.length){h.push(this._unpair(this.paired[0],{silent:true}))}this.trigger("pair:unpair",h)},_pairToJSON:function(h){return{collection_type:"paired",src:"new_collection",name:h.name,element_identifiers:[{name:"forward",id:h.forward.id,src:"hda"},{name:"reverse",id:h.reverse.id,src:"hda"}]}},createList:function(){var
j=this,i;if(j.historyId){i="/api/histories/"+this.historyId+"/contents/dataset_collections"}var
h={type:"dataset_collection",collection_type:"list:paired",name:_.escape(j.$(".collection-name").val()),element_identifiers:j.paired.map(function(k){return
j._pairToJSON(k)})};return
jQuery.ajax(i,{type:"POST",contentType:"application/json",dataType:"json",data:JSON.stringify(h)}).fail(function(m,k,l){j._ajaxErrHandler(m,k,l)}).done(function(k,l,m){j.trigger("collection:created",k,l,m);if(typeof
j.oncreate==="function"){j.oncreate.call(this,k,l,m)}})},_ajaxErrHandler:function(k,h,j){this.error(k,h,j);var
i=d("An error occurred while creating this
collection");if(k){if(k.readyState===0&&k.status===0){i+=":
"+d("Galaxy could not be reached and may be updating.")+d(" Try again
in a few minutes.")}else{if(k.responseJSON){i+="<br
/><pre>"+JSON.stringify(k.responseJSON)+"</pre>"}else{i+=":
"+j}}}creator._showAlert(i,"alert-danger")},render:function(h,i){this.$el.empty().html(e.templates.main());this._renderHeader(h);this._renderMiddle(h);this._renderFooter(h);this._addPluginComponents();return
this},_renderHeader:function(i,j){var
h=this.$(".header").empty().html(e.templates.header()).find(".help-content").prepend($(e.templates.helpContent()));this._renderFilters();return
h},_renderFilters:function(){return this.$(".forward-column .column-header
input").val(this.filters[0]).add(this.$(".reverse-column .column-header
input").val(this.filters[1]))},_renderMiddle:function(i,j){var
h=this.$(".middle").empty().html(e.templates.middle());if(this.unpairedPanelHidden){this.$(".unpaired-columns").hide()}else{if(this.pairedPanelHidden){this.$(".paired-columns").hide()}}this._renderUnpaired();this._renderPaired();return
h},_renderUnpaired:function(m,n){var
k=this,l,i,h=[],j=this._splitByFilters();this.$(".forward-column
.title").text([j[0].length,d("unpaired forward")].join("
"));this.$(".forward-column
.unpaired-info").text(this._renderUnpairedDisplayStr(this.unpaired.length-j[0].length));this.$(".reverse-column
.title").text([j[1].length,d("unpaired reverse")].join("
"));this.$(".reverse-column
.unpaired-info").text(this._renderUnpairedDisplayStr(this.unpaired.length-j[1].length));this.$(".unpaired-columns
.column-datasets").empty();this.$(".autopair-link").toggle(this.unpaired.length!==0);if(this.unpaired.length===0){this._renderUnpairedEmpty();return}i=j[1].map(function(p,o){if((j[0][o]!==undefined)&&(j[0][o]!==p)){h.push(k._renderPairButton())}return
k._renderUnpairedDataset(p)});l=j[0].map(function(o){return
k._renderUnpairedDataset(o)});if(!l.length&&!i.length){this._renderUnpairedNotShown();return}this.$(".unpaired-columns
.forward-column .column-datasets").append(l).add(this.$(".unpaired-columns
.paired-column .column-datasets").append(h)).add(this.$(".unpaired-columns
.reverse-column
.column-datasets").append(i));this._adjUnpairedOnScrollbar()},_renderUnpairedDisplayStr:function(h){return["(",h,"
",d("filtered
out"),")"].join("")},_renderUnpairedDataset:function(h){return
$("<li/>").attr("id","dataset-"+h.id).addClass("dataset
unpaired").attr("draggable",true).addClass(h.selected?"selected":"").append($("<span/>").addClass("dataset-name").text(h.name)).data("dataset",h)},_renderPairButton:function(){return
$("<li/>").addClass("dataset
unpaired").append($("<span/>").addClass("dataset-name").text(d("Pair
these datasets")))},_renderUnpairedEmpty:function(){var h=$('<div
class="empty-message"></div>').text("("+d("no
remaining unpaired datasets")+")");this.$(".unpaired-columns
.paired-column .column-datasets").empty().prepend(h);return
h},_renderUnpairedNotShown:function(){var h=$('<div
class="empty-message"></div>').text("("+d("no
datasets were found matching the current
filters")+")");this.$(".unpaired-columns .paired-column
.column-datasets").empty().prepend(h);return
h},_adjUnpairedOnScrollbar:function(){var
k=this.$(".unpaired-columns").last(),l=this.$(".unpaired-columns
.reverse-column .dataset").first();if(!l.size()){return}var
h=k.offset().left+k.outerWidth(),j=l.offset().left+l.outerWidth(),i=Math.floor(h)-Math.floor(j);this.$(".unpaired-columns
.forward-column").css("margin-left",(i>0)?i:0)},_renderPaired:function(i,j){this.$(".paired-column-title
.title").text([this.paired.length,d("paired")].join("
"));this.$(".unpair-all-link").toggle(this.paired.length!==0);if(this.paired.length===0){this._renderPairedEmpty();return}else{this.$(".remove-extensions-link").show()}this.$(".paired-columns
.column-datasets").empty();var h=this;this.paired.forEach(function(m,k){var l=new
f({pair:m});h.$(".paired-columns
.column-datasets").append(l.render().$el).append(['<button
class="unpair-btn">','<span class="fa fa-unlink"
title="',d("Unpair"),'"></span>',"</button>"].join(""))})},_renderPairedEmpty:function(){var
h=$('<div
class="empty-message"></div>').text("("+d("no paired
datasets yet")+")");this.$(".paired-columns
.column-datasets").empty().prepend(h);return h},_renderFooter:function(i,j){var
h=this.$(".footer").empty().html(e.templates.footer());this.$(".remove-extensions").prop("checked",this.removeExtensions);if(typeof
this.oncancel==="function"){this.$(".cancel-create.btn").show()}return
h},_addPluginComponents:function(){this._chooseFiltersPopover(".choose-filters-link");this.$(".help-content
i").hoverhighlight(".collection-creator","rgba( 64, 255, 255, 1.0
)")},_chooseFiltersPopover:function(h){function i(l,k){return['<button
class="filter-choice btn" ','data-forward="',l,'"
data-reverse="',k,'">',d("Forward"),":
",l,", ",d("Reverse"),":
",k,"</button>"].join("")}var j=$(_.template(['<div
class="choose-filters">','<div
class="help">',d("Choose from the following filters to change which
unpaired reads are shown in the
display"),":</div>",i("_1","_2"),i("_R1","_R2"),"</div>"].join(""),{}));return
this.$(h).popover({container:".collection-creator",placement:"bottom",html:true,content:j})},_validationWarning:function(i,h){var
j="validation-warning";if(i==="name"){i=this.$(".collection-name").add(this.$(".collection-name-prompt"));this.$(".collection-name").focus().select()}if(h){i=i||this.$("."+j);i.removeClass(j)}else{i.addClass(j)}},_setUpBehaviors:function(){this.on("pair:new",function(){this._renderUnpaired();this._renderPaired();this.$(".paired-columns").scrollTop(8000000)});this.on("pair:unpair",function(h){this._renderUnpaired();this._renderPaired();this.splitView()});this.on("filter-change",function(){this.filters=[this.$(".forward-unpaired-filter
input").val(),this.$(".reverse-unpaired-filter
input").val()];this._renderFilters();this._renderUnpaired()});this.on("autopair",function(){this._renderUnpaired();this._renderPaired();var
h,i=null;if(this.paired.length){i="alert-success";h=this.paired.length+"
"+d("pairs created");if(!this.unpaired.length){h+=":
"+d("all datasets have been successfully
paired");this.hideUnpaired()}}else{h=d("Could not automatically create any pairs
from the given dataset names")}this._showAlert(h,i)});return
this},events:{"click .more-help":"_clickMoreHelp","click
.less-help":"_clickLessHelp","click .header .alert
button":"_hideAlert","click .forward-column
.column-title":"_clickShowOnlyUnpaired","click .reverse-column
.column-title":"_clickShowOnlyUnpaired","click
.unpair-all-link":"_clickUnpairAll","change .forward-unpaired-filter
input":function(h){this.trigger("filter-change")},"focus
.forward-unpaired-filter input":function(h){$(h.currentTarget).select()},"click
.autopair-link":"_clickAutopair","click .choose-filters
.filter-choice":"_clickFilterChoice","click
.clear-filters-link":"_clearFilters","change .reverse-unpaired-filter
input":function(h){this.trigger("filter-change")},"focus
.reverse-unpaired-filter input":function(h){$(h.currentTarget).select()},"click
.forward-column .dataset.unpaired":"_clickUnpairedDataset","click
.reverse-column .dataset.unpaired":"_clickUnpairedDataset","click
.paired-column .dataset.unpaired":"_clickPairRow","click
.unpaired-columns":"clearSelectedUnpaired","mousedown
.unpaired-columns .dataset":"_mousedownUnpaired","click
.paired-column-title":"_clickShowOnlyPaired","mousedown
.flexible-partition-drag":"_startPartitionDrag","click .paired-columns
.dataset.paired":"selectPair","click .paired-columns
.pair-name":"_clickPairName","click
.unpair-btn":"_clickUnpair","change
.remove-extensions":function(h){this.toggleExtensions()},"change
.collection-name":"_changeName","click
.cancel-create":function(h){if(typeof
this.oncancel==="function"){this.oncancel.call(this)}},"click
.create-collection":"_clickCreate"},_clickMoreHelp:function(h){this.$(".main-help").addClass("expanded");this.$(".more-help").hide()},_clickLessHelp:function(h){this.$(".main-help").removeClass("expanded");this.$(".more-help").show()},_showAlert:function(i,h){h=h||"alert-danger";this.$(".main-help").hide();this.$(".header
.alert").attr("class","alert
alert-dismissable").addClass(h).show().find(".alert-message").html(i)},_hideAlert:function(h){this.$(".main-help").show();this.$(".header
.alert").hide()},_clickShowOnlyUnpaired:function(h){if(this.$(".paired-columns").is(":visible")){this.hidePaired()}else{this.splitView()}},_clickShowOnlyPaired:function(h){if(this.$(".unpaired-columns").is(":visible")){this.hideUnpaired()}else{this.splitView()}},hideUnpaired:function(h,i){this.unpairedPanelHidden=true;this.pairedPanelHidden=false;this._renderMiddle(h,i)},hidePaired:function(h,i){this.unpairedPanelHidden=false;this.pairedPanelHidden=true;this._renderMiddle(h,i)},splitView:function(h,i){this.unpairedPanelHidden=this.pairedPanelHidden=false;this._renderMiddle(h,i);return
this},_clickUnpairAll:function(h){this.unpairAll()},_clickAutopair:function(i){var
h=this.autoPair();this.trigger("autopair",h)},_clickFilterChoice:function(i){var
h=$(i.currentTarget);this.$(".forward-unpaired-filter
input").val(h.data("forward"));this.$(".reverse-unpaired-filter
input").val(h.data("reverse"));this._hideChooseFilters();this.trigger("filter-change")},_hideChooseFilters:function(){this.$(".choose-filters-link").popover("hide");this.$(".popover").css("display","none")},_clearFilters:function(h){this.$(".forward-unpaired-filter
input").val("");this.$(".reverse-unpaired-filter
input").val("");this.trigger("filter-change")},_clickUnpairedDataset:function(h){h.stopPropagation();return
this.toggleSelectUnpaired($(h.currentTarget))},toggleSelectUnpaired:function(j,i){i=i||{};var
k=j.data("dataset"),h=i.force!==undefined?i.force:!j.hasClass("selected");if(!j.size()||k===undefined){return
j}if(h){j.addClass("selected");if(!i.waitToPair){this.pairAllSelected()}}else{j.removeClass("selected")}return
j},pairAllSelected:function(i){i=i||{};var
j=this,k=[],h=[],l=[];j.$(".unpaired-columns .forward-column
.dataset.selected").each(function(){k.push($(this).data("dataset"))});j.$(".unpaired-columns
.reverse-column
.dataset.selected").each(function(){h.push($(this).data("dataset"))});k.length=h.length=Math.min(k.length,h.length);k.forEach(function(n,m){try{l.push(j._pair(n,h[m],{silent:true}))}catch(o){j.error(o)}});if(l.length&&!i.silent){this.trigger("pair:new",l)}return
l},clearSelectedUnpaired:function(){this.$(".unpaired-columns
.dataset.selected").removeClass("selected")},_mousedownUnpaired:function(j){if(j.shiftKey){var
i=this,h=$(j.target).addClass("selected"),k=function(l){i.$(l.target).filter(".dataset").addClass("selected")};h.parent().on("mousemove",k);$(document).one("mouseup",function(l){h.parent().off("mousemove",k);i.pairAllSelected()})}},_clickPairRow:function(j){var
k=$(j.currentTarget).index(),i=$(".unpaired-columns .forward-column
.dataset").eq(k).data("dataset"),h=$(".unpaired-columns
.reverse-column
.dataset").eq(k).data("dataset");this._pair(i,h)},_startPartitionDrag:function(i){var
h=this,l=i.pageY;$("body").css("cursor","ns-resize");h.$(".flexible-partition-drag").css("color","black");function
k(m){h.$(".flexible-partition-drag").css("color","");$("body").css("cursor","").unbind("mousemove",j)}function
j(m){var
n=m.pageY-l;if(!h.adjPartition(n)){$("body").trigger("mouseup")}h._adjUnpairedOnScrollbar();l+=n}$("body").mousemove(j);$("body").one("mouseup",k)},adjPartition:function(i){var
h=this.$(".unpaired-columns"),j=this.$(".paired-columns"),k=parseInt(h.css("height"),10),l=parseInt(j.css("height"),10);k=Math.max(10,k+i);l=l-i;var
m=i<0;if(m){if(this.unpairedPanelHidden){return
false}else{if(k<=10){this.hideUnpaired();return
false}}}else{if(this.unpairedPanelHidden){h.show();this.unpairedPanelHidden=false}}if(!m){if(this.pairedPanelHidden){return
false}else{if(l<=15){this.hidePaired();return
false}}}else{if(this.pairedPanelHidden){j.show();this.pairedPanelHidden=false}}h.css({height:k+"px",flex:"0
0 auto"});return
true},selectPair:function(h){$(h.currentTarget).toggleClass("selected")},_clickPairName:function(j){j.stopPropagation();var
i=$(j.currentTarget),k=this.paired[i.parent().index()],h=prompt("Enter a new name for
the
pair:",k.name);if(h){k.name=h;k.customizedName=true;i.text(k.name)}},_clickUnpair:function(i){var
h=Math.floor($(i.currentTarget).index()/2);this._unpair(this.paired[h])},toggleExtensions:function(i){var
h=this;h.removeExtensions=(i!==undefined)?(i):(!h.removeExtensions);_.each(h.paired,function(j){if(j.customizedName){return}j.name=h._guessNameForPair(j.forward,j.reverse)});h._renderPaired();h._renderFooter()},_changeName:function(h){this._validationWarning("name",!!this._getName())},_getName:function(){return
_.escape(this.$(".collection-name").val())},_clickCreate:function(i){var
h=this._getName();if(!h){this._validationWarning("name")}else{this.createList()}},_printList:function(i){var
h=this;_.each(i,function(j){if(i===h.paired){h._printPair(j)}else{}})},_printPair:function(h){this.debug(h.forward.name,h.reverse.name,":
->",h.name)},toString:function(){return"PairedCollectionCreator"}});e.templates=e.templates||{main:_.template(['<div
class="header flex-row no-flex"></div>','<div
class="middle flex-row flex-row-container"></div>','<div
class="footer flex-row
no-flex">'].join("")),header:_.template(['<div
class="main-help well clear">','<a class="more-help"
href="javascript:void(0);">',d("More
help"),"</a>",'<div
class="help-content">','<a class="less-help"
href="javascript:void(0);">',d("Less"),"</a>","</div>","</div>",'<div
class="alert alert-dismissable">','<button type="button"
class="close" data-dismiss="alert"
aria-hidden="true">×</button>','<span
class="alert-message"></span>',"</div>",'<div
class="column-headers vertically-spaced
flex-column-container">','<div class="forward-column flex-column
column">','<div class="column-header">','<div
class="column-title">','<span
class="title">',d("Unpaired
forward"),"</span>",'<span class="title-info
unpaired-info"></span>',"</div>",'<div
class="unpaired-filter forward-unpaired-filter
pull-left">','<input class="search-query"
placeholder="',d("Filter this list"),'"
/>',"</div>","</div>","</div>",'<div
class="paired-column flex-column no-flex column">','<div
class="column-header">','<a class="choose-filters-link"
href="javascript:void(0)">',d("Choose
filters"),"</a>",'<a class="clear-filters-link"
href="javascript:void(0);">',d("Clear
filters"),"</a><br />",'<a
class="autopair-link"
href="javascript:void(0);">',d("Auto-pair"),"</a>","</div>","</div>",'<div
class="reverse-column flex-column column">','<div
class="column-header">','<div
class="column-title">','<span
class="title">',d("Unpaired
reverse"),"</span>",'<span class="title-info
unpaired-info"></span>',"</div>",'<div
class="unpaired-filter reverse-unpaired-filter
pull-left">','<input class="search-query"
placeholder="',d("Filter this list"),'"
/>',"</div>","</div>","</div>","</div>"].join("")),middle:_.template(['<div
class="unpaired-columns flex-column-container scroll-container
flex-row">','<div class="forward-column flex-column
column">','<ol
class="column-datasets"></ol>',"</div>",'<div
class="paired-column flex-column no-flex column">','<ol
class="column-datasets"></ol>',"</div>",'<div
class="reverse-column flex-column column">','<ol
class="column-datasets"></ol>',"</div>","</div>",'<div
class="flexible-partition">','<div
class="flexible-partition-drag" title="',d("Drag to
change"),'"></div>','<div
class="column-header">','<div class="column-title
paired-column-title">','<span
class="title"></span>',"</div>",'<a
class="unpair-all-link"
href="javascript:void(0);">',d("Unpair
all"),"</a>","</div>","</div>",'<div
class="paired-columns flex-column-container scroll-container
flex-row">','<ol
class="column-datasets"></ol>',"</div>"].join("")),footer:_.template(['<div
class="attributes clear">','<div
class="clear">','<label class="remove-extensions-prompt
pull-right">',d("Remove file extensions from pair
names"),"?",'<input class="remove-extensions pull-right"
type="checkbox"
/>',"</label>","</div>",'<div
class="clear">','<input class="collection-name form-control
pull-right" ','placeholder="',d("Enter a name for your new
list"),'" />','<div class="collection-name-prompt
pull-right">',d("Name"),":</div>","</div>","</div>",'<div
class="actions clear vertically-spaced">','<div
class="other-options pull-left">','<button
class="cancel-create btn"
tabindex="-1">',d("Cancel"),"</button>",'<div
class="create-other btn-group dropup">','<button class="btn
btn-default dropdown-toggle" data-toggle="dropdown">',d("Create
a different kind of collection"),' <span
class="caret"></span>',"</button>",'<ul
class="dropdown-menu" role="menu">','<li><a
href="#">',d("Create a <i>single</i>
pair"),"</a></li>",'<li><a
href="#">',d("Create a list of <i>unpaired</i>
datasets"),"</a></li>","</ul>","</div>","</div>",'<div
class="main-options pull-right">','<button
class="create-collection btn btn-primary">',d("Create
list"),"</button>","</div>","</div>"].join("")),helpContent:_.template(["<p>",d(["Collections
of paired datasets are ordered lists of dataset pairs (often forward and reverse reads).
","These collections can be passed to tools and workflows in order to have
analyses done on each member of ","the entire group. This interface allows you
to create a collection, choose which datasets are paired, ","and re-order the
final
collection."].join("")),"</p>","<p>",d(['Unpaired
datasets are shown in the <i data-target=".unpaired-columns">unpaired
section</i> ',"(hover over the underlined words to highlight below).
",'Paired datasets are shown in the <i
data-target=".paired-columns">paired
section</i>.',"<ul>To pair datasets, you
can:","<li>Click a dataset in the ",'<i
data-target=".unpaired-columns .forward-column
.column-datasets,','.unpaired-columns .forward-column">forward
column</i> ',"to select it then click a dataset in the ",'<i
data-target=".unpaired-columns .reverse-column
.column-datasets,','.unpaired-columns .reverse-column">reverse
column</i>.',"</li>",'<li>Click one of the "Pair
these datasets" buttons in the ','<i data-target=".unpaired-columns
.paired-column .column-datasets,','.unpaired-columns
.paired-column">middle column</i> ',"to pair the datasets in a
particular row.","</li>",'<li>Click <i
data-target=".autopair-link">"Auto-pair"</i> ',"to
have your datasets automatically paired based on
name.","</li>","</ul>"].join("")),"</p>","<p>",d(["<ul>You
can filter what is shown in the unpaired sections by:","<li>Entering
partial dataset names in either the ",'<i
data-target=".forward-unpaired-filter input">forward filter</i> or
','<i data-target=".reverse-unpaired-filter input">reverse
filter</i>.',"</li>","<li>Choosing from a list of
preset filters by clicking the ",'<i
data-target=".choose-filters-link">"Choose filters"
link</i>.',"</li>","<li>Entering regular expressions
to match dataset names. See: ",'<a
href="https://developer.mozilla.org/en-US/docs/Web/JavaScript/Guide/...
target="_blank">MDN\'s JavaScript Regular Expression Tutorial</a>.
',"Note: forward slashes (\\) are not
needed.","</li>","<li>Clearing the filters by clicking the
",'<i data-target=".clear-filters-link">"Clear filters"
link</i>.',"</li>","</ul>"].join("")),"</p>","<p>",d(["To
unpair individual dataset pairs, click the ",'<i
data-target=".unpair-btn">unpair buttons ( <span class="fa
fa-unlink"></span> )</i>. ','Click the <i
data-target=".unpair-all-link">"Unpair all" link</i> to
unpair all
pairs.'].join("")),"</p>","<p>",d(['You
can include or remove the file extensions (e.g. ".fastq") from your pair names
by toggling the ','<i
data-target=".remove-extensions-prompt">"Remove file extensions from
pair names?"</i>
control.'].join("")),"</p>","<p>",d(['Once
your collection is complete, enter a <i
data-target=".collection-name">name</i> and ','click <i
data-target=".create-collection">"Create list"</i>.
',"(Note: you do not have to pair all unpaired datasets to
finish.)"].join("")),"</p>"].join(""))};(function(){jQuery.fn.extend({hoverhighlight:function
h(j,i){j=j||"body";if(!this.size()){return this}$(this).each(function(){var
l=$(this),k=l.data("target");if(k){l.mouseover(function(m){$(k,j).css({background:i})}).mouseout(function(m){$(k).css({background:""})})}});return
this}})}());var b=function
c(j,h){h=_.defaults(h||{},{datasets:j,oncancel:function(){Galaxy.modal.hide()},oncreate:function(){Galaxy.modal.hide();Galaxy.currHistoryPanel.refreshContents()}});if(!window.Galaxy||!Galaxy.modal){throw
new Error("Galaxy or Galaxy.modal not found")}var i=new
e(h).render();Galaxy.modal.show({title:"Create a collection of paired
datasets",body:i.$el,width:"80%",height:"800px",closing_events:true});window.PCC=i;return
i};return{PairedCollectionCreator:e,pairedCollectionCreatorModal:b}});
\ No newline at end of file
+define(["utils/levenshtein","mvc/base-mvc","utils/localization"],function(g,a,d){var
f=Backbone.View.extend(a.LoggableMixin).extend({tagName:"li",className:"dataset
paired",initialize:function(h){this.pair=h.pair||{}},render:function(){this.$el.attr("draggable",true).data("pair",this.pair).html(_.template(['<span
class="forward-dataset-name flex-column"><%= pair.forward.name
%></span>','<span class="pair-name-column
flex-column">','<span class="pair-name"><%= pair.name
%></span>',"</span>",'<span
class="reverse-dataset-name flex-column"><%= pair.reverse.name
%></span>'].join(""),{pair:this.pair})).addClass("flex-column-container");return
this},events:{dragstart:"_dragstart",dragend:"_dragend",dragover:"_sendToParent",drop:"_sendToParent"},_dragstart:function(h){h.currentTarget.style.opacity="0.4";if(h.originalEvent){h=h.originalEvent}h.dataTransfer.effectAllowed="move";h.dataTransfer.setData("text/plain",JSON.stringify(this.pair));this.$el.parent().trigger("pair.dragstart",[this])},_dragend:function(h){h.currentTarget.style.opacity="1.0";this.$el.parent().trigger("pair.dragend",[this])},_sendToParent:function(h){this.$el.parent().trigger(h)},toString:function(){return"PairView("+this.pair.name+")"}});var
e=Backbone.View.extend(a.LoggableMixin).extend({className:"collection-creator
flex-row-container",initialize:function(h){h=_.defaults(h,{datasets:[],filters:this.DEFAULT_FILTERS,automaticallyPair:true,matchPercentage:1,strategy:"lcs"});this.initialList=h.datasets;this.historyId=h.historyId;this.filters=this.commonFilters[h.filters]||this.commonFilters[this.DEFAULT_FILTERS];if(_.isArray(h.filters)){this.filters=h.filters}this.automaticallyPair=h.automaticallyPair;this.matchPercentage=h.matchPercentage;this.strategy=this.strategies[h.strategy]||this.strategies[this.DEFAULT_STRATEGY];if(_.isFunction(h.strategy)){this.strategy=h.strategy}this.removeExtensions=true;this.oncancel=h.oncancel;this.oncreate=h.oncreate;this.unpairedPanelHidden=false;this.pairedPanelHidden=false;this.$dragging=null;this._dataSetUp();this._setUpBehaviors()},commonFilters:{none:["",""],illumina:["_1","_2"]},DEFAULT_FILTERS:"illumina",strategies:{lcs:"autoPairLCSs",levenshtein:"autoPairLevenshtein"},DEFAULT_STRATEGY:"lcs",_dataSetUp:function(){this.paired=[];this.unpaired=[];this.selectedIds=[];this._sortInitialList();this._ensureIds();this.unpaired=this.initialList.slice(0);if(this.automaticallyPair){this.autoPair()}},_sortInitialList:function(){this._sortDatasetList(this.initialList)},_sortDatasetList:function(h){h.sort(function(j,i){return
naturalSort(j.name,i.name)});return
h},_ensureIds:function(){this.initialList.forEach(function(h){if(!h.hasOwnProperty("id")){h.id=_.uniqueId()}});return
this.initialList},_splitByFilters:function(j){var
i=[],h=[];this.unpaired.forEach(function(k){if(this._filterFwdFn(k)){i.push(k)}if(this._filterRevFn(k)){h.push(k)}}.bind(this));return[i,h]},_filterFwdFn:function(i){var
h=new RegExp(this.filters[0]);return h.test(i.name)},_filterRevFn:function(i){var h=new
RegExp(this.filters[1]);return h.test(i.name)},_addToUnpaired:function(i){var
h=function(j,l){if(j===l){return j}var
k=Math.floor((l-j)/2)+j,m=naturalSort(i.name,this.unpaired[k].name);if(m<0){return
h(j,k)}else{if(m>0){return
h(k+1,l)}}while(this.unpaired[k]&&this.unpaired[k].name===i.name){k++}return
k}.bind(this);this.unpaired.splice(h(0,this.unpaired.length),0,i)},autoPair:function(h){h=h||this.strategy;this.simpleAutoPair();return
this[h].call(this)},simpleAutoPair:function(){var
n=0,l,r=this._splitByFilters(),h=r[0],q=r[1],p,s,k=false;while(n<h.length){var
m=h[n];p=m.name.replace(this.filters[0],"");k=false;for(l=0;l<q.length;l++){var
o=q[l];s=o.name.replace(this.filters[1],"");if(m!==o&&p===s){k=true;this._pair(h.splice(n,1)[0],q.splice(l,1)[0],{silent:true});break}}if(!k){n+=1}}},autoPairLevenshtein:function(){var
o=0,m,t=this._splitByFilters(),h=t[0],r=t[1],q,v,k,s,l;while(o<h.length){var
n=h[o];q=n.name.replace(this.filters[0],"");l=Number.MAX_VALUE;for(m=0;m<r.length;m++){var
p=r[m];v=p.name.replace(this.filters[1],"");if(n!==p){if(q===v){s=m;l=0;break}k=levenshteinDistance(q,v);if(k<l){s=m;l=k}}}var
u=1-(l/(Math.max(q.length,v.length)));if(u>=this.matchPercentage){this._pair(h.splice(o,1)[0],r.splice(s,1)[0],{silent:true});if(h.length<=0||r.length<=0){return}}else{o+=1}}},autoPairLCSs:function(){var
m=0,k,t=this._splitByFilters(),h=t[0],r=t[1],q,w,v,s,o;if(!h.length||!r.length){return}while(m<h.length){var
l=h[m];q=l.name.replace(this.filters[0],"");o=0;for(k=0;k<r.length;k++){var
p=r[k];w=p.name.replace(this.filters[1],"");if(l!==p){if(q===w){s=k;o=q.length;break}var
n=this._naiveStartingAndEndingLCS(q,w);v=n.length;if(v>o){s=k;o=v}}}var
u=o/(Math.min(q.length,w.length));if(u>=this.matchPercentage){this._pair(h.splice(m,1)[0],r.splice(s,1)[0],{silent:true});if(h.length<=0||r.length<=0){return}}else{m+=1}}},_naiveStartingAndEndingLCS:function(m,k){var
n="",o="",l=0,h=0;while(l<m.length&&l<k.length){if(m[l]!==k[l]){break}n+=m[l];l+=1}if(l===m.length){return
m}if(l===k.length){return
k}l=(m.length-1);h=(k.length-1);while(l>=0&&h>=0){if(m[l]!==k[h]){break}o=[m[l],o].join("");l-=1;h-=1}return
n+o},_pair:function(j,h,i){i=i||{};var
k=this._createPair(j,h,i.name);this.paired.push(k);this.unpaired=_.without(this.unpaired,j,h);if(!i.silent){this.trigger("pair:new",k)}return
k},_createPair:function(j,h,i){if(!(j&&h)||(j===h)){throw new Error("Bad
pairing:
"+[JSON.stringify(j),JSON.stringify(h)])}i=i||this._guessNameForPair(j,h);return{forward:j,name:i,reverse:h}},_guessNameForPair:function(j,h,k){k=(k!==undefined)?(k):(this.removeExtensions);var
i=this._naiveStartingAndEndingLCS(j.name.replace(this.filters[0],""),h.name.replace(this.filters[1],""));if(k){var
l=i.lastIndexOf(".");if(l>0){i=i.slice(0,l)}}return i||(j.name+" &
"+h.name)},_unpair:function(i,h){h=h||{};if(!i){throw new Error("Bad pair:
"+JSON.stringify(i))}this.paired=_.without(this.paired,i);this._addToUnpaired(i.forward);this._addToUnpaired(i.reverse);if(!h.silent){this.trigger("pair:unpair",[i])}return
i},unpairAll:function(){var
h=[];while(this.paired.length){h.push(this._unpair(this.paired[0],{silent:true}))}this.trigger("pair:unpair",h)},_pairToJSON:function(h){return{collection_type:"paired",src:"new_collection",name:h.name,element_identifiers:[{name:"forward",id:h.forward.id,src:"hda"},{name:"reverse",id:h.reverse.id,src:"hda"}]}},createList:function(){var
j=this,i;if(j.historyId){i="/api/histories/"+this.historyId+"/contents/dataset_collections"}var
h={type:"dataset_collection",collection_type:"list:paired",name:_.escape(j.$(".collection-name").val()),element_identifiers:j.paired.map(function(k){return
j._pairToJSON(k)})};return
jQuery.ajax(i,{type:"POST",contentType:"application/json",dataType:"json",data:JSON.stringify(h)}).fail(function(m,k,l){j._ajaxErrHandler(m,k,l)}).done(function(k,l,m){j.trigger("collection:created",k,l,m);if(typeof
j.oncreate==="function"){j.oncreate.call(this,k,l,m)}})},_ajaxErrHandler:function(k,h,j){this.error(k,h,j);var
i=d("An error occurred while creating this
collection");if(k){if(k.readyState===0&&k.status===0){i+=":
"+d("Galaxy could not be reached and may be updating.")+d(" Try again
in a few minutes.")}else{if(k.responseJSON){i+="<br
/><pre>"+JSON.stringify(k.responseJSON)+"</pre>"}else{i+=":
"+j}}}creator._showAlert(i,"alert-danger")},render:function(h,i){this.$el.empty().html(e.templates.main());this._renderHeader(h);this._renderMiddle(h);this._renderFooter(h);this._addPluginComponents();return
this},_renderHeader:function(i,j){var
h=this.$(".header").empty().html(e.templates.header()).find(".help-content").prepend($(e.templates.helpContent()));this._renderFilters();return
h},_renderFilters:function(){return this.$(".forward-column .column-header
input").val(this.filters[0]).add(this.$(".reverse-column .column-header
input").val(this.filters[1]))},_renderMiddle:function(i,j){var
h=this.$(".middle").empty().html(e.templates.middle());if(this.unpairedPanelHidden){this.$(".unpaired-columns").hide()}else{if(this.pairedPanelHidden){this.$(".paired-columns").hide()}}this._renderUnpaired();this._renderPaired();return
h},_renderUnpaired:function(m,n){var
k=this,l,i,h=[],j=this._splitByFilters();this.$(".forward-column
.title").text([j[0].length,d("unpaired forward")].join("
"));this.$(".forward-column
.unpaired-info").text(this._renderUnpairedDisplayStr(this.unpaired.length-j[0].length));this.$(".reverse-column
.title").text([j[1].length,d("unpaired reverse")].join("
"));this.$(".reverse-column
.unpaired-info").text(this._renderUnpairedDisplayStr(this.unpaired.length-j[1].length));this.$(".unpaired-columns
.column-datasets").empty();this.$(".autopair-link").toggle(this.unpaired.length!==0);if(this.unpaired.length===0){this._renderUnpairedEmpty();return}i=j[1].map(function(p,o){if((j[0][o]!==undefined)&&(j[0][o]!==p)){h.push(k._renderPairButton())}return
k._renderUnpairedDataset(p)});l=j[0].map(function(o){return
k._renderUnpairedDataset(o)});if(!l.length&&!i.length){this._renderUnpairedNotShown();return}this.$(".unpaired-columns
.forward-column .column-datasets").append(l).add(this.$(".unpaired-columns
.paired-column .column-datasets").append(h)).add(this.$(".unpaired-columns
.reverse-column
.column-datasets").append(i));this._adjUnpairedOnScrollbar()},_renderUnpairedDisplayStr:function(h){return["(",h,"
",d("filtered
out"),")"].join("")},_renderUnpairedDataset:function(h){return
$("<li/>").attr("id","dataset-"+h.id).addClass("dataset
unpaired").attr("draggable",true).addClass(h.selected?"selected":"").append($("<span/>").addClass("dataset-name").text(h.name)).data("dataset",h)},_renderPairButton:function(){return
$("<li/>").addClass("dataset
unpaired").append($("<span/>").addClass("dataset-name").text(d("Pair
these datasets")))},_renderUnpairedEmpty:function(){var h=$('<div
class="empty-message"></div>').text("("+d("no
remaining unpaired datasets")+")");this.$(".unpaired-columns
.paired-column .column-datasets").empty().prepend(h);return
h},_renderUnpairedNotShown:function(){var h=$('<div
class="empty-message"></div>').text("("+d("no
datasets were found matching the current
filters")+")");this.$(".unpaired-columns .paired-column
.column-datasets").empty().prepend(h);return
h},_adjUnpairedOnScrollbar:function(){var
k=this.$(".unpaired-columns").last(),l=this.$(".unpaired-columns
.reverse-column .dataset").first();if(!l.size()){return}var
h=k.offset().left+k.outerWidth(),j=l.offset().left+l.outerWidth(),i=Math.floor(h)-Math.floor(j);this.$(".unpaired-columns
.forward-column").css("margin-left",(i>0)?i:0)},_renderPaired:function(i,j){this.$(".paired-column-title
.title").text([this.paired.length,d("paired")].join("
"));this.$(".unpair-all-link").toggle(this.paired.length!==0);if(this.paired.length===0){this._renderPairedEmpty();return}else{this.$(".remove-extensions-link").show()}this.$(".paired-columns
.column-datasets").empty();var h=this;this.paired.forEach(function(m,k){var l=new
f({pair:m});h.$(".paired-columns
.column-datasets").append(l.render().$el).append(['<button
class="unpair-btn">','<span class="fa fa-unlink"
title="',d("Unpair"),'"></span>',"</button>"].join(""))})},_renderPairedEmpty:function(){var
h=$('<div
class="empty-message"></div>').text("("+d("no paired
datasets yet")+")");this.$(".paired-columns
.column-datasets").empty().prepend(h);return h},_renderFooter:function(i,j){var
h=this.$(".footer").empty().html(e.templates.footer());this.$(".remove-extensions").prop("checked",this.removeExtensions);if(typeof
this.oncancel==="function"){this.$(".cancel-create.btn").show()}return
h},_addPluginComponents:function(){this._chooseFiltersPopover(".choose-filters-link");this.$(".help-content
i").hoverhighlight(".collection-creator","rgba( 64, 255, 255, 1.0
)")},_chooseFiltersPopover:function(h){function i(l,k){return['<button
class="filter-choice btn" ','data-forward="',l,'"
data-reverse="',k,'">',d("Forward"),":
",l,", ",d("Reverse"),":
",k,"</button>"].join("")}var j=$(_.template(['<div
class="choose-filters">','<div
class="help">',d("Choose from the following filters to change which
unpaired reads are shown in the
display"),":</div>",i("_1","_2"),i("_R1","_R2"),"</div>"].join(""),{}));return
this.$(h).popover({container:".collection-creator",placement:"bottom",html:true,content:j})},_validationWarning:function(i,h){var
j="validation-warning";if(i==="name"){i=this.$(".collection-name").add(this.$(".collection-name-prompt"));this.$(".collection-name").focus().select()}if(h){i=i||this.$("."+j);i.removeClass(j)}else{i.addClass(j)}},_setUpBehaviors:function(){this.on("pair:new",function(){this._renderUnpaired();this._renderPaired();this.$(".paired-columns").scrollTop(8000000)});this.on("pair:unpair",function(h){this._renderUnpaired();this._renderPaired();this.splitView()});this.on("filter-change",function(){this.filters=[this.$(".forward-unpaired-filter
input").val(),this.$(".reverse-unpaired-filter
input").val()];this._renderFilters();this._renderUnpaired()});this.on("autopair",function(){this._renderUnpaired();this._renderPaired();var
h,i=null;if(this.paired.length){i="alert-success";h=this.paired.length+"
"+d("pairs created");if(!this.unpaired.length){h+=":
"+d("all datasets have been successfully
paired");this.hideUnpaired()}}else{h=d("Could not automatically create any pairs
from the given dataset names")}this._showAlert(h,i)});return
this},events:{"click .more-help":"_clickMoreHelp","click
.less-help":"_clickLessHelp","click .header .alert
button":"_hideAlert","click .forward-column
.column-title":"_clickShowOnlyUnpaired","click .reverse-column
.column-title":"_clickShowOnlyUnpaired","click
.unpair-all-link":"_clickUnpairAll","change .forward-unpaired-filter
input":function(h){this.trigger("filter-change")},"focus
.forward-unpaired-filter input":function(h){$(h.currentTarget).select()},"click
.autopair-link":"_clickAutopair","click .choose-filters
.filter-choice":"_clickFilterChoice","click
.clear-filters-link":"_clearFilters","change .reverse-unpaired-filter
input":function(h){this.trigger("filter-change")},"focus
.reverse-unpaired-filter input":function(h){$(h.currentTarget).select()},"click
.forward-column .dataset.unpaired":"_clickUnpairedDataset","click
.reverse-column .dataset.unpaired":"_clickUnpairedDataset","click
.paired-column .dataset.unpaired":"_clickPairRow","click
.unpaired-columns":"clearSelectedUnpaired","mousedown
.unpaired-columns .dataset":"_mousedownUnpaired","click
.paired-column-title":"_clickShowOnlyPaired","mousedown
.flexible-partition-drag":"_startPartitionDrag","click .paired-columns
.dataset.paired":"selectPair","click
.paired-columns":"clearSelectedPaired","click .paired-columns
.pair-name":"_clickPairName","click
.unpair-btn":"_clickUnpair","dragover .paired-columns
.column-datasets":"_dragoverPairedColumns","drop .paired-columns
.column-datasets":"_dropPairedColumns","pair.dragstart .paired-columns
.column-datasets":"_pairDragstart","pair.dragend .paired-columns
.column-datasets":"_pairDragend","change
.remove-extensions":function(h){this.toggleExtensions()},"change
.collection-name":"_changeName","click
.cancel-create":function(h){if(typeof
this.oncancel==="function"){this.oncancel.call(this)}},"click
.create-collection":"_clickCreate"},_clickMoreHelp:function(h){this.$(".main-help").addClass("expanded");this.$(".more-help").hide()},_clickLessHelp:function(h){this.$(".main-help").removeClass("expanded");this.$(".more-help").show()},_showAlert:function(i,h){h=h||"alert-danger";this.$(".main-help").hide();this.$(".header
.alert").attr("class","alert
alert-dismissable").addClass(h).show().find(".alert-message").html(i)},_hideAlert:function(h){this.$(".main-help").show();this.$(".header
.alert").hide()},_clickShowOnlyUnpaired:function(h){if(this.$(".paired-columns").is(":visible")){this.hidePaired()}else{this.splitView()}},_clickShowOnlyPaired:function(h){if(this.$(".unpaired-columns").is(":visible")){this.hideUnpaired()}else{this.splitView()}},hideUnpaired:function(h,i){this.unpairedPanelHidden=true;this.pairedPanelHidden=false;this._renderMiddle(h,i)},hidePaired:function(h,i){this.unpairedPanelHidden=false;this.pairedPanelHidden=true;this._renderMiddle(h,i)},splitView:function(h,i){this.unpairedPanelHidden=this.pairedPanelHidden=false;this._renderMiddle(h,i);return
this},_clickUnpairAll:function(h){this.unpairAll()},_clickAutopair:function(i){var
h=this.autoPair();this.trigger("autopair",h)},_clickFilterChoice:function(i){var
h=$(i.currentTarget);this.$(".forward-unpaired-filter
input").val(h.data("forward"));this.$(".reverse-unpaired-filter
input").val(h.data("reverse"));this._hideChooseFilters();this.trigger("filter-change")},_hideChooseFilters:function(){this.$(".choose-filters-link").popover("hide");this.$(".popover").css("display","none")},_clearFilters:function(h){this.$(".forward-unpaired-filter
input").val("");this.$(".reverse-unpaired-filter
input").val("");this.trigger("filter-change")},_clickUnpairedDataset:function(h){h.stopPropagation();return
this.toggleSelectUnpaired($(h.currentTarget))},toggleSelectUnpaired:function(j,i){i=i||{};var
k=j.data("dataset"),h=i.force!==undefined?i.force:!j.hasClass("selected");if(!j.size()||k===undefined){return
j}if(h){j.addClass("selected");if(!i.waitToPair){this.pairAllSelected()}}else{j.removeClass("selected")}return
j},pairAllSelected:function(i){i=i||{};var
j=this,k=[],h=[],l=[];j.$(".unpaired-columns .forward-column
.dataset.selected").each(function(){k.push($(this).data("dataset"))});j.$(".unpaired-columns
.reverse-column
.dataset.selected").each(function(){h.push($(this).data("dataset"))});k.length=h.length=Math.min(k.length,h.length);k.forEach(function(n,m){try{l.push(j._pair(n,h[m],{silent:true}))}catch(o){j.error(o)}});if(l.length&&!i.silent){this.trigger("pair:new",l)}return
l},clearSelectedUnpaired:function(){this.$(".unpaired-columns
.dataset.selected").removeClass("selected")},_mousedownUnpaired:function(j){if(j.shiftKey){var
i=this,h=$(j.target).addClass("selected"),k=function(l){i.$(l.target).filter(".dataset").addClass("selected")};h.parent().on("mousemove",k);$(document).one("mouseup",function(l){h.parent().off("mousemove",k);i.pairAllSelected()})}},_clickPairRow:function(j){var
k=$(j.currentTarget).index(),i=$(".unpaired-columns .forward-column
.dataset").eq(k).data("dataset"),h=$(".unpaired-columns
.reverse-column
.dataset").eq(k).data("dataset");this._pair(i,h)},_startPartitionDrag:function(i){var
h=this,l=i.pageY;$("body").css("cursor","ns-resize");h.$(".flexible-partition-drag").css("color","black");function
k(m){h.$(".flexible-partition-drag").css("color","");$("body").css("cursor","").unbind("mousemove",j)}function
j(m){var
n=m.pageY-l;if(!h.adjPartition(n)){$("body").trigger("mouseup")}h._adjUnpairedOnScrollbar();l+=n}$("body").mousemove(j);$("body").one("mouseup",k)},adjPartition:function(i){var
h=this.$(".unpaired-columns"),j=this.$(".paired-columns"),k=parseInt(h.css("height"),10),l=parseInt(j.css("height"),10);k=Math.max(10,k+i);l=l-i;var
m=i<0;if(m){if(this.unpairedPanelHidden){return
false}else{if(k<=10){this.hideUnpaired();return
false}}}else{if(this.unpairedPanelHidden){h.show();this.unpairedPanelHidden=false}}if(!m){if(this.pairedPanelHidden){return
false}else{if(l<=15){this.hidePaired();return
false}}}else{if(this.pairedPanelHidden){j.show();this.pairedPanelHidden=false}}h.css({height:k+"px",flex:"0
0 auto"});return
true},selectPair:function(h){h.stopPropagation();$(h.currentTarget).toggleClass("selected")},clearSelectedPaired:function(h){this.$(".paired-columns
.dataset.selected").removeClass("selected")},_clickPairName:function(j){j.stopPropagation();var
i=$(j.currentTarget),k=this.paired[i.parent().index()],h=prompt("Enter a new name for
the
pair:",k.name);if(h){k.name=h;k.customizedName=true;i.text(k.name)}},_clickUnpair:function(i){var
h=Math.floor($(i.currentTarget).index()/2);this._unpair(this.paired[h])},_dragoverPairedColumns:function(k){k.preventDefault();var
i=this.$(".paired-columns .column-datasets"),l=i.offset();var
j=this._getNearestPairedDatasetLi(k.originalEvent.clientY);$(".paired-drop-placeholder").remove();var
h=$('<div
class="paired-drop-placeholder"></div>');if(!j.size()){i.append(h)}else{j.before(h)}},_getNearestPairedDatasetLi:function(o){var
l=4,j=this.$(".paired-columns .column-datasets li").toArray();for(var
k=0;k<j.length;k++){var
n=$(j[k]),m=n.offset().top,h=Math.floor(n.outerHeight()/2)+l;if(m+h>o&&m-h<o){return
n}}return
$()},_dropPairedColumns:function(i){i.preventDefault();i.dataTransfer.dropEffect="move";var
h=this._getNearestPairedDatasetLi(i.originalEvent.clientY);if(h.size()){this.$dragging.insertBefore(h)}else{this.$dragging.insertAfter(this.$(".paired-columns
.unpair-btn").last())}this._syncPairsToDom();return
false},_syncPairsToDom:function(){var h=[];this.$(".paired-columns
.dataset.paired").each(function(){h.push($(this).data("pair"))});this.paired=h;this._renderPaired()},_pairDragstart:function(i,j){j.$el.addClass("selected");var
h=this.$(".paired-columns
.dataset.selected");this.$dragging=h},_pairDragend:function(h,i){$(".paired-drop-placeholder").remove();this.$dragging=null},toggleExtensions:function(i){var
h=this;h.removeExtensions=(i!==undefined)?(i):(!h.removeExtensions);_.each(h.paired,function(j){if(j.customizedName){return}j.name=h._guessNameForPair(j.forward,j.reverse)});h._renderPaired();h._renderFooter()},_changeName:function(h){this._validationWarning("name",!!this._getName())},_getName:function(){return
_.escape(this.$(".collection-name").val())},_clickCreate:function(i){var
h=this._getName();if(!h){this._validationWarning("name")}else{this.createList()}},_printList:function(i){var
h=this;_.each(i,function(j){if(i===h.paired){h._printPair(j)}else{}})},_printPair:function(h){this.debug(h.forward.name,h.reverse.name,":
->",h.name)},toString:function(){return"PairedCollectionCreator"}});e.templates=e.templates||{main:_.template(['<div
class="header flex-row no-flex"></div>','<div
class="middle flex-row flex-row-container"></div>','<div
class="footer flex-row
no-flex">'].join("")),header:_.template(['<div
class="main-help well clear">','<a class="more-help"
href="javascript:void(0);">',d("More
help"),"</a>",'<div
class="help-content">','<a class="less-help"
href="javascript:void(0);">',d("Less"),"</a>","</div>","</div>",'<div
class="alert alert-dismissable">','<button type="button"
class="close" data-dismiss="alert"
aria-hidden="true">×</button>','<span
class="alert-message"></span>',"</div>",'<div
class="column-headers vertically-spaced
flex-column-container">','<div class="forward-column flex-column
column">','<div class="column-header">','<div
class="column-title">','<span
class="title">',d("Unpaired
forward"),"</span>",'<span class="title-info
unpaired-info"></span>',"</div>",'<div
class="unpaired-filter forward-unpaired-filter
pull-left">','<input class="search-query"
placeholder="',d("Filter this list"),'"
/>',"</div>","</div>","</div>",'<div
class="paired-column flex-column no-flex column">','<div
class="column-header">','<a class="choose-filters-link"
href="javascript:void(0)">',d("Choose
filters"),"</a>",'<a class="clear-filters-link"
href="javascript:void(0);">',d("Clear
filters"),"</a><br />",'<a
class="autopair-link"
href="javascript:void(0);">',d("Auto-pair"),"</a>","</div>","</div>",'<div
class="reverse-column flex-column column">','<div
class="column-header">','<div
class="column-title">','<span
class="title">',d("Unpaired
reverse"),"</span>",'<span class="title-info
unpaired-info"></span>',"</div>",'<div
class="unpaired-filter reverse-unpaired-filter
pull-left">','<input class="search-query"
placeholder="',d("Filter this list"),'"
/>',"</div>","</div>","</div>","</div>"].join("")),middle:_.template(['<div
class="unpaired-columns flex-column-container scroll-container
flex-row">','<div class="forward-column flex-column
column">','<ol
class="column-datasets"></ol>',"</div>",'<div
class="paired-column flex-column no-flex column">','<ol
class="column-datasets"></ol>',"</div>",'<div
class="reverse-column flex-column column">','<ol
class="column-datasets"></ol>',"</div>","</div>",'<div
class="flexible-partition">','<div
class="flexible-partition-drag" title="',d("Drag to
change"),'"></div>','<div
class="column-header">','<div class="column-title
paired-column-title">','<span
class="title"></span>',"</div>",'<a
class="unpair-all-link"
href="javascript:void(0);">',d("Unpair
all"),"</a>","</div>","</div>",'<div
class="paired-columns flex-column-container scroll-container
flex-row">','<ol
class="column-datasets"></ol>',"</div>"].join("")),footer:_.template(['<div
class="attributes clear">','<div
class="clear">','<label class="remove-extensions-prompt
pull-right">',d("Remove file extensions from pair
names"),"?",'<input class="remove-extensions pull-right"
type="checkbox"
/>',"</label>","</div>",'<div
class="clear">','<input class="collection-name form-control
pull-right" ','placeholder="',d("Enter a name for your new
list"),'" />','<div class="collection-name-prompt
pull-right">',d("Name"),":</div>","</div>","</div>",'<div
class="actions clear vertically-spaced">','<div
class="other-options pull-left">','<button
class="cancel-create btn"
tabindex="-1">',d("Cancel"),"</button>",'<div
class="create-other btn-group dropup">','<button class="btn
btn-default dropdown-toggle" data-toggle="dropdown">',d("Create
a different kind of collection"),' <span
class="caret"></span>',"</button>",'<ul
class="dropdown-menu" role="menu">','<li><a
href="#">',d("Create a <i>single</i>
pair"),"</a></li>",'<li><a
href="#">',d("Create a list of <i>unpaired</i>
datasets"),"</a></li>","</ul>","</div>","</div>",'<div
class="main-options pull-right">','<button
class="create-collection btn btn-primary">',d("Create
list"),"</button>","</div>","</div>"].join("")),helpContent:_.template(["<p>",d(["Collections
of paired datasets are ordered lists of dataset pairs (often forward and reverse reads).
","These collections can be passed to tools and workflows in order to have
analyses done on each member of ","the entire group. This interface allows you
to create a collection, choose which datasets are paired, ","and re-order the
final
collection."].join("")),"</p>","<p>",d(['Unpaired
datasets are shown in the <i data-target=".unpaired-columns">unpaired
section</i> ',"(hover over the underlined words to highlight below).
",'Paired datasets are shown in the <i
data-target=".paired-columns">paired
section</i>.',"<ul>To pair datasets, you
can:","<li>Click a dataset in the ",'<i
data-target=".unpaired-columns .forward-column
.column-datasets,','.unpaired-columns .forward-column">forward
column</i> ',"to select it then click a dataset in the ",'<i
data-target=".unpaired-columns .reverse-column
.column-datasets,','.unpaired-columns .reverse-column">reverse
column</i>.',"</li>",'<li>Click one of the "Pair
these datasets" buttons in the ','<i data-target=".unpaired-columns
.paired-column .column-datasets,','.unpaired-columns
.paired-column">middle column</i> ',"to pair the datasets in a
particular row.","</li>",'<li>Click <i
data-target=".autopair-link">"Auto-pair"</i> ',"to
have your datasets automatically paired based on
name.","</li>","</ul>"].join("")),"</p>","<p>",d(["<ul>You
can filter what is shown in the unpaired sections by:","<li>Entering
partial dataset names in either the ",'<i
data-target=".forward-unpaired-filter input">forward filter</i> or
','<i data-target=".reverse-unpaired-filter input">reverse
filter</i>.',"</li>","<li>Choosing from a list of
preset filters by clicking the ",'<i
data-target=".choose-filters-link">"Choose filters"
link</i>.',"</li>","<li>Entering regular expressions
to match dataset names. See: ",'<a
href="https://developer.mozilla.org/en-US/docs/Web/JavaScript/Guide/...
target="_blank">MDN\'s JavaScript Regular Expression Tutorial</a>.
',"Note: forward slashes (\\) are not
needed.","</li>","<li>Clearing the filters by clicking the
",'<i data-target=".clear-filters-link">"Clear filters"
link</i>.',"</li>","</ul>"].join("")),"</p>","<p>",d(["To
unpair individual dataset pairs, click the ",'<i
data-target=".unpair-btn">unpair buttons ( <span class="fa
fa-unlink"></span> )</i>. ','Click the <i
data-target=".unpair-all-link">"Unpair all" link</i> to
unpair all
pairs.'].join("")),"</p>","<p>",d(['You
can include or remove the file extensions (e.g. ".fastq") from your pair names
by toggling the ','<i
data-target=".remove-extensions-prompt">"Remove file extensions from
pair names?"</i>
control.'].join("")),"</p>","<p>",d(['Once
your collection is complete, enter a <i
data-target=".collection-name">name</i> and ','click <i
data-target=".create-collection">"Create list"</i>.
',"(Note: you do not have to pair all unpaired datasets to
finish.)"].join("")),"</p>"].join(""))};(function(){jQuery.fn.extend({hoverhighlight:function
h(j,i){j=j||"body";if(!this.size()){return this}$(this).each(function(){var
l=$(this),k=l.data("target");if(k){l.mouseover(function(m){$(k,j).css({background:i})}).mouseout(function(m){$(k).css({background:""})})}});return
this}})}());var b=function
c(j,h){h=_.defaults(h||{},{datasets:j,oncancel:function(){Galaxy.modal.hide()},oncreate:function(){Galaxy.modal.hide();Galaxy.currHistoryPanel.refreshContents()}});if(!window.Galaxy||!Galaxy.modal){throw
new Error("Galaxy or Galaxy.modal not found")}var i=new
e(h).render();Galaxy.modal.show({title:"Create a collection of paired
datasets",body:i.$el,width:"80%",height:"800px",closing_events:true});window.PCC=i;return
i};return{PairedCollectionCreator:e,pairedCollectionCreatorModal:b}});
\ No newline at end of file
diff -r c4e19939b6a300c555a9fdab10b7372d8a8a73a1 -r
11e6f06278126edb16c6333e2eddf6dd1a9772b2 static/scripts/packed/mvc/tools/tools-form.js
--- a/static/scripts/packed/mvc/tools/tools-form.js
+++ b/static/scripts/packed/mvc/tools/tools-form.js
@@ -1,1 +1,1 @@
-define(["mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-datasets","mvc/tools/tools-section"],function(f,j,h,a,e,c,g,i){var
d=Backbone.Model.extend({initialize:function(k){this.url=galaxy_config.root+"api/tools/"+k.id+"?io_details=true"}});var
b=Backbone.View.extend({main_el:"body",initialize:function(l){var
k=this;this.options=l;this.model=new d({id:l.id});this.datasets=new
g({success:function(){k._initializeToolForm()}})},_initializeToolForm:function(){this.field_list={};this.inputs_sequential={};var
k=this;this.model.fetch({error:function(l){console.debug("tools-form::_initializeToolForm()
: Attempt to fetch tool model
failed.")},success:function(){k.inputs=k.model.get("inputs");k.portlet=new
f.View({icon:"fa-wrench",title:"<b>"+k.model.get("name")+"</b>
"+k.model.get("description"),buttons:{execute:new
j.ButtonIcon({icon:"fa-check",tooltip:"Execute the
tool",title:"Execute",floating:"clear",onclick:function(){}})}});k.message=new
j.Message();k.portlet.append(k.message.$el);$(k.main_el).append(k.portlet.$el);if(k.options.help!=""){$(k.main_el).append(c.help(k.options.help))}if(k.options.citations){$(k.main_el).append(c.citations());var
l=new h.ToolCitationCollection();l.tool_id=k.options.id;var m=new
a.CitationListView({collection:l});m.render();l.fetch()}k.setElement(k.portlet.content());k.section=new
i.View(k,{inputs:k.model.get("inputs")});k.portlet.append(k.section.$el)}})}});return{View:b}});
\ No newline at end of file
+define(["mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-datasets","mvc/tools/tools-section","mvc/tools/tools-tree"],function(g,k,i,a,f,d,h,j,c){var
e=Backbone.Model.extend({initialize:function(l){this.url=galaxy_config.root+"api/tools/"+l.id+"?io_details=true"}});var
b=Backbone.View.extend({main_el:"body",initialize:function(m){var
l=this;this.options=m;this.model=new e({id:m.id});this.tree=new
c(this);this.field_list={};this.input_list={};this.data=new
Backbone.Model();this.datasets=new
h({success:function(){l._initializeToolForm()}})},_initializeToolForm:function(){var
l=this;this.model.fetch({error:function(m){console.debug("tools-form::_initializeToolForm()
: Attempt to fetch tool model
failed.")},success:function(){l.inputs=l.model.get("inputs");l.portlet=new
g.View({icon:"fa-wrench",title:"<b>"+l.model.get("name")+"</b>
"+l.model.get("description"),buttons:{execute:new
k.ButtonIcon({icon:"fa-check",tooltip:"Execute the
tool",title:"Execute",floating:"clear",onclick:function(){console.log(l.tree.create(l))}})}});l.message=new
k.Message();l.portlet.append(l.message.$el);$(l.main_el).append(l.portlet.$el);if(l.options.help!=""){$(l.main_el).append(d.help(l.options.help))}if(l.options.citations){$(l.main_el).append(d.citations());var
m=new i.ToolCitationCollection();m.tool_id=l.options.id;var n=new
a.CitationListView({collection:m});n.render();m.fetch()}l.setElement(l.portlet.content());l.section=new
j.View(l,{inputs:l.model.get("inputs")});l.portlet.append(l.section.$el);l.refresh()}})},refresh:function(){this.tree.refresh();for(var
l in
this.field_list){this.field_list[l].trigger("change")}console.debug("tools-form::refresh()
- Recreated tree structure. Refresh.")}});return{View:b}});
\ No newline at end of file
diff -r c4e19939b6a300c555a9fdab10b7372d8a8a73a1 -r
11e6f06278126edb16c6333e2eddf6dd1a9772b2 static/scripts/packed/mvc/tools/tools-section.js
--- a/static/scripts/packed/mvc/tools/tools-section.js
+++ b/static/scripts/packed/mvc/tools/tools-section.js
@@ -1,1 +1,1 @@
-define(["mvc/ui/ui-table","mvc/ui/ui-misc","mvc/ui/ui-tabs"],function(b,d,a){var
c=Backbone.View.extend({initialize:function(f,e){this.app=f;this.inputs=e.inputs;this.datasets=f.datasets;this.table=new
b.View(e);this.setElement(this.table.$el);this.render()},render:function(){this.table.delAll();var
e=new Backbone.Model();for(var f in this.inputs){this._add(this.inputs[f],e)}for(var f in
this.app.field_list){this.app.field_list[f].trigger("change")}},_add:function(f,k){var
e=this;var
j=f.type;switch(j){case"conditional":f.label=f.test_param.label;f.name=f.test_param.name;this._addRow("conditional",f,k);for(var
h in f.cases){var l=new
c(this.app,{inputs:f.cases[h].inputs,cls:"ui-table-plain"});this.table.add("");this.table.add(l.$el);this.table.append(f.name+"_formsection_"+h)}break;case"repeat":var
g=new a.View({title_new:"Add Group",onnew:function(){var m=new
c(e.app,{inputs:f.inputs,cls:"ui-table-plain"});var
i=f.name+"_formsection_"+g.size();g.add({id:i,title:"Repeat",$el:m.$el,ondel:function(){g.del(i)}});g.show(i)}});this.table.add(f.title);this.table.add(g.$el);this.table.append(f.name);break;default:this._addRow(j,f,k)}},_addRow:function(h,e,f){var
j=e.name;var
g=null;switch(h){case"text":g=this._field_text(e,f);break;case"select":g=this._field_select(e,f);break;case"radiobutton":g=this._field_radio(e,f);break;case"data":g=this._field_data(e,f);break;case"data_column":g=this._field_column(e,f);break;case"textarea":g=this._field_textarea(e,f);break;case"conditional":g=this._field_conditional(e,f);break}if(!g){console.debug("tools-form::_addRow()
: Unmatched field type
("+h+").");return}if(!f.get(j)){f.set(j,e.value)}g.value(f.get(j));this.app.field_list[j]=g;this.app.inputs_sequential[j]=e;var
i=$("<div/>");i.append(g.$el);if(e.help){i.append('<div
class="ui-table-form-info">'+e.help+"</div>")}this.table.add('<span
class="ui-table-form-title">'+e.label+"</span>","25%");this.table.add(i);this.table.append(j);if(e.hide){this.table.get(j).hide()}},_field_text:function(e,f){var
g=e.name;return new
d.Input({id:"field-"+g,value:f.get(g),onchange:function(h){f.set(g,h)}})},_field_textarea:function(e,f){var
g=e.name;return new
d.Textarea({id:"field-"+g,onchange:function(){f.set(g,field.value())}})},_field_conditional:function(g,k){var
e=this;var f=[];for(var h in g.test_param.options){var
j=g.test_param.options[h];f.push({label:j[0],value:j[1]})}var l=g.name;return new
d.Select.View({id:"field-"+l,data:f,value:k.get(l),onchange:function(q){k.set(l,q);for(var
p in g.cases){var n=g.cases[p];var o=g.name+"_formsection_"+p;var
m=e.table.get(o);if(n.value==q){m.show()}else{m.hide()}}}})},_field_data:function(g,k){var
e=this;var l=g.name;var j=this.datasets.filterType();var f=[];for(var h in
j){f.push({label:j[h].get("name"),value:j[h].get("id")})}return new
d.Select.View({id:"field-"+l,data:f,value:f[0].value,onchange:function(r){k.set(l,r);var
n=_.where(e.app.inputs_sequential,{data_ref:l,type:"data_column"});var
t=e.datasets.filter(r);if(t&&n.length>0){console.debug("tool-form::field_data()
- Selected dataset "+r+".");var
s=t.get("metadata_column_types");if(!s){console.debug("tool-form::field_data()
- FAILED: Could not find metadata for dataset "+r+".")}var q=[];for(var p
in s){q.push({label:"Column: "+(parseInt(p)+1)+"
["+s[p]+"]",value:p})}for(var o in n){var
m=e.app.field_list[n[o].name];if(m){m.update(q);m.value(m.first())}}}else{console.debug("tool-form::field_data()
- FAILED: Could not find dataset
"+r+".")}}})},_field_column:function(e,f){var g=e.name;return new
d.Select.View({id:"field-"+g,value:f.get(g),onchange:function(h){f.set(g,h)}})},_field_select:function(f,k){var
e=[];for(var g in f.options){var h=f.options[g];e.push({label:h[0],value:h[1]})}var
j=d.Select;if(f.display=="checkboxes"){j=d.Checkbox}var l=f.name;return new
j.View({id:"field-"+l,data:e,value:k.get(l),onchange:function(i){k.set(l,i)}})},_field_radio:function(e,f){var
g=e.name;return new
d.RadioButton({id:"field-"+g,data:e.data,value:f.get(g),onchange:function(h){f.set(g,h)}})}});return{View:c}});
\ No newline at end of file
+define(["utils/utils","mvc/ui/ui-table","mvc/ui/ui-misc","mvc/ui/ui-tabs"],function(c,b,e,a){var
d=Backbone.View.extend({initialize:function(g,f){this.app=g;this.inputs=f.inputs;this.datasets=g.datasets;this.data=g.data;f.cls_tr="form-row";this.table=new
b.View(f);this.setElement(this.table.$el);this.render()},render:function(){this.table.delAll();for(var
f in this.inputs){this._add(this.inputs[f],this.data)}},_add:function(h,j){var g=this;var
f=jQuery.extend(true,{},h);f.id=c.uuid();this.app.input_list[f.id]=f;var
i=f.type;switch(i){case"conditional":this._addConditional(f,j);break;case"repeat":this._addRepeat(f);break;default:this._addRow(i,f,j)}},_addConditional:function(f,j){f.label=f.test_param.label;f.value=f.test_param.value;this._addRow("conditional",f,j);for(var
h in f.cases){var g=f.id+"-section-"+h;var k=new
d(this.app,{inputs:f.cases[h].inputs,cls:"ui-table-plain"});this.table.add("");this.table.add(k.$el);this.table.append(g)}},_addRepeat:function(f){var
g=this;var k=new a.View({title_new:"Add "+f.title,max:f.max,onnew:function(){var
i=f.id+"-section-"+c.uuid();var m=new
d(g.app,{inputs:f.inputs,cls:"ui-table-plain"});k.add({id:i,title:f.title,$el:m.$el,ondel:function(){k.del(i);k.retitle(f.title);g.app.refresh()}});k.retitle(f.title);k.show(i);g.app.refresh()}});for(var
j=0;j<f.min;j++){var h=f.id+"-section-"+c.uuid();var l=new
d(g.app,{inputs:f.inputs,cls:"ui-table-plain"});k.add({id:h,title:f.title,$el:l.$el})}k.retitle(f.title);this.table.add("");this.table.add(k.$el);this.table.append(f.id)},_addRow:function(i,f,g){var
k=f.id;var
h=null;switch(i){case"text":h=this._field_text(f,g);break;case"select":h=this._field_select(f,g);break;case"radiobutton":h=this._field_radio(f,g);break;case"data":h=this._field_data(f,g);break;case"data_column":h=this._field_column(f,g);break;case"textarea":h=this._field_textarea(f,g);break;case"conditional":h=this._field_conditional(f,g);break;case"hidden":h=this._field_hidden(f,g);break}if(!h){console.debug("tools-form::_addRow()
: Unmatched field type
("+i+").");return}if(!g.get(k)){g.set(k,f.value)}h.value(g.get(k));this.app.field_list[k]=h;var
j=$("<div/>");j.append(h.$el);if(f.help){j.append('<div
class="ui-table-form-info">'+f.help+"</div>")}this.table.add('<span
class="ui-table-form-title">'+f.label+"</span>","20%");this.table.add(j);this.table.append(k)},_field_conditional:function(f,l){var
g=this;var h=[];for(var j in f.test_param.options){var
k=f.test_param.options[j];h.push({label:k[0],value:k[1]})}var m=f.id;return new
e.Select.View({id:"field-"+m,data:h,value:l.get(m),onchange:function(u){l.set(m,u);for(var
s in f.cases){var o=f.cases[s];var r=f.id+"-section-"+s;var n=g.table.get(r);var
q=false;for(var p in o.inputs){var
t=o.inputs[p].type;if(t&&t!=="hidden"){q=true;break}}if(o.value==u&&q){n.fadeIn("fast")}else{n.hide()}}}})},_field_data:function(f,l){var
g=this;var m=f.id;var k=this.datasets.filterType();var h=[];for(var j in
k){h.push({label:k[j].get("name"),value:k[j].get("id")})}return new
e.Select.View({id:"field-"+m,data:h,value:h[0].value,onchange:function(s){l.set(m,s);var
o=g.app.tree.findReferences(m);var
u=g.datasets.filter(s);if(u&&o.length>0){console.debug("tool-form::field_data()
- Selected dataset "+s+".");var
t=u.get("metadata_column_types");if(!t){console.debug("tool-form::field_data()
- FAILED: Could not find metadata for dataset "+s+".")}var r=[];for(var q
in t){r.push({label:"Column: "+(parseInt(q)+1)+"
["+t[q]+"]",value:q})}for(var p in o){var
n=g.app.field_list[o[p]];if(n){n.update(r);if(!n.exists(n.value())){n.value(n.first())}}}}else{console.debug("tool-form::field_data()
- FAILED: Could not find dataset
"+s+".")}}})},_field_column:function(f,g){var h=f.id;return new
e.Select.View({id:"field-"+h,value:g.get(h),onchange:function(i){g.set(h,i)}})},_field_select:function(f,l){var
g=[];for(var h in f.options){var j=f.options[h];g.push({label:j[0],value:j[1]})}var
k=e.Select;if(f.display=="checkboxes"){k=e.Checkbox}var m=f.id;return new
k.View({id:"field-"+m,data:g,value:l.get(m),onchange:function(i){l.set(m,i)}})},_field_text:function(f,g){var
h=f.id;return new
e.Input({id:"field-"+h,value:g.get(h),onchange:function(i){g.set(h,i)}})},_field_textarea:function(f,g){var
h=f.id;return new
e.Textarea({id:"field-"+h,onchange:function(){g.set(h,field.value())}})},_field_radio:function(f,g){var
h=f.id;return new
e.RadioButton({id:"field-"+h,data:f.data,value:g.get(h),onchange:function(i){g.set(h,i)}})},_field_hidden:function(f,g){var
h=f.id;return new e.Hidden({id:"field-"+h,value:g.get(h)})}});return{View:d}});
\ No newline at end of file
diff -r c4e19939b6a300c555a9fdab10b7372d8a8a73a1 -r
11e6f06278126edb16c6333e2eddf6dd1a9772b2 static/scripts/packed/mvc/tools/tools-tree.js
--- /dev/null
+++ b/static/scripts/packed/mvc/tools/tools-tree.js
@@ -0,0 +1,1 @@
+define([],function(){return
Backbone.Model.extend({initialize:function(a){this.app=a},refresh:function(){if(!this.app.section){return{}}this.dict={};this.xml=$("<div/>");this._iterate(this.app.section.$el,this.dict,this.xml)},_iterate:function(d,e,b){var
a=this;var c=$(d).children();c.each(function(){var i=this;var
h=$(i).attr("id");if($(i).hasClass("form-row")||$(i).hasClass("tab-pane")){e[h]={};var
f=a.app.input_list[h];if(f){e[h]={input:f}}var g=$('<div
id="'+h+'"/>');b.append(g);a._iterate(i,e[h],g)}else{a._iterate(i,e,b)}})},findReferences:function(c){var
f=[];var b=this;function d(g,i){var h=$(i).children();var k=[];var
j=false;h.each(function(){var n=this;var m=$(n).attr("id");if(m!==c){var
l=b.app.input_list[m];if(l){if(l.name==g){j=true;return
false}if(l.data_ref==g){k.push(m)}}}});if(!j){f=f.concat(k);h.each(function(){d(g,this)})}}var
e=this.xml.find("#"+c);if(e.length>0){var
a=this.app.input_list[c];if(a){d(a.name,e.parent())}}return f}})});
\ No newline at end of file
diff -r c4e19939b6a300c555a9fdab10b7372d8a8a73a1 -r
11e6f06278126edb16c6333e2eddf6dd1a9772b2 static/scripts/packed/mvc/ui.js
--- a/static/scripts/packed/mvc/ui.js
+++ b/static/scripts/packed/mvc/ui.js
@@ -1,1 +1,1 @@
-var
IconButton=Backbone.Model.extend({defaults:{title:"",icon_class:"",on_click:null,menu_options:null,is_menu_button:true,id:null,href:null,target:null,enabled:true,visible:true,tooltip_config:{}}});var
IconButtonView=Backbone.View.extend({initialize:function(){this.model.attributes.tooltip_config={placement:"bottom"};this.model.bind("change",this.render,this)},render:function(){this.$el.tooltip("hide");var
a=this.template(this.model.toJSON());a.tooltip(this.model.get("tooltip_config"));this.$el.replaceWith(a);this.setElement(a);return
this},events:{click:"click"},click:function(a){if(_.isFunction(this.model.get("on_click"))){this.model.get("on_click")(a);return
false}return true},template:function(b){var a='title="'+b.title+'"
class="icon-button';if(b.is_menu_button){a+=" menu-button"}a+="
"+b.icon_class;if(!b.enabled){a+="_disabled"}a+='"';if(b.id){a+='
id="'+b.id+'"'}a+='
href="'+b.href+'"';if(b.target){a+='
target="'+b.target+'"'}if(!b.visible){a+=' style="display:
none;"'}if(b.enabled){a="<a
"+a+"/>"}else{a="<span "+a+"/>"}return
$(a)}});var IconButtonCollection=Backbone.Collection.extend({model:IconButton});var
IconButtonMenuView=Backbone.View.extend({tagName:"div",initialize:function(){this.render()},render:function(){var
a=this;this.collection.each(function(d){var
b=$("<a/>").attr("href","javascript:void(0)").attr("title",d.attributes.title).addClass("icon-button
menu-button").addClass(d.attributes.icon_class).appendTo(a.$el).click(d.attributes.on_click);if(d.attributes.tooltip_config){b.tooltip(d.attributes.tooltip_config)}var
c=d.get("options");if(c){make_popupmenu(b,c)}});return this}});var
create_icon_buttons_menu=function(b,a){if(!a){a={}}var c=new
IconButtonCollection(_.map(b,function(d){return new IconButton(_.extend(d,a))}));return
new IconButtonMenuView({collection:c})};var Grid=Backbone.Collection.extend({});var
GridView=Backbone.View.extend({});var
PopupMenu=Backbone.View.extend({initialize:function(b,a){this.$button=b;if(!this.$button.size()){this.$button=$("<div/>")}this.options=a||[];var
c=this;this.$button.click(function(d){$(".popmenu-wrapper").remove();c._renderAndShow(d);return
false})},_renderAndShow:function(a){this.render();this.$el.appendTo("body").css(this._getShownPosition(a)).show();this._setUpCloseBehavior()},render:function(){this.$el.addClass("popmenu-wrapper").hide().css({position:"absolute"}).html(this.template(this.$button.attr("id"),this.options));if(this.options.length){var
a=this;this.$el.find("li").each(function(c,b){var
d=a.options[c];if(d.func){$(this).children("a.popupmenu-option").click(function(e){d.func.call(a,e,d)})}})}return
this},template:function(b,a){return['<ul id="',b,'-menu"
class="dropdown-menu">',this._templateOptions(a),"</ul>"].join("")},_templateOptions:function(a){if(!a.length){return"<li>(no
options)</li>"}return _.map(a,function(d){if(d.divider){return'<li
class="divider"></li>'}else{if(d.header){return['<li
class="head"><a
href="javascript:void(0);">',d.html,"</a></li>"].join("")}}var
c=d.href||"javascript:void(0);",e=(d.target)?('
target="'+d.target+'"'):(""),b=(d.checked)?('<span
class="fa
fa-check"></span>'):("");return['<li><a
class="popupmenu-option"
href="',c,'"',e,">",b,d.html,"</a></li>"].join("")}).join("")},_getShownPosition:function(b){var
c=this.$el.width();var
a=b.pageX-c/2;a=Math.min(a,$(document).scrollLeft()+$(window).width()-c-5);a=Math.max(a,$(document).scrollLeft()+5);return{top:b.pageY,left:a}},_setUpCloseBehavior:function(){var
c=this;function
a(e){$(document).off("click.close_popup");if(window.parent!==window){try{$(window.parent.document).off("click.close_popup")}catch(d){}}else{try{$("iframe#galaxy_main").contents().off("click.close_popup")}catch(d){}}c.remove()}$("html").one("click.close_popup",a);if(window.parent!==window){try{$(window.parent.document).find("html").one("click.close_popup",a)}catch(b){}}else{try{$("iframe#galaxy_main").contents().one("click.close_popup",a)}catch(b){}}},addItem:function(b,a){a=(a>=0)?a:this.options.length;this.options.splice(a,0,b);return
this},removeItem:function(a){if(a>=0){this.options.splice(a,1)}return
this},findIndexByHtml:function(b){for(var
a=0;a<this.options.length;a++){if(_.has(this.options[a],"html")&&(this.options[a].html===b)){return
a}}return null},findItemByHtml:function(a){return
this.options[(this.findIndexByHtml(a))]},toString:function(){return"PopupMenu"}});PopupMenu.create=function
_create(b,a){return new PopupMenu(b,a)};PopupMenu.make_popupmenu=function(b,c){var
a=[];_.each(c,function(f,d){var
e={html:d};if(f===null){e.header=true}else{if(jQuery.type(f)==="function"){e.func=f}}a.push(e)});return
new
PopupMenu($(b),a)};PopupMenu.convertLinksToOptions=function(c,a){c=$(c);a=a||"a";var
b=[];c.find(a).each(function(g,e){var
f={},d=$(g);f.html=d.text();if(d.attr("href")){var
j=d.attr("href"),k=d.attr("target"),h=d.attr("confirm");f.func=function(){if((h)&&(!confirm(h))){return}switch(k){case"_parent":window.parent.location=j;break;case"_top":window.top.location=j;break;default:window.location=j}}}b.push(f)});return
b};PopupMenu.fromExistingDom=function(d,c,a){d=$(d);c=$(c);var
b=PopupMenu.convertLinksToOptions(c,a);c.remove();return new
PopupMenu(d,b)};PopupMenu.make_popup_menus=function(c,b,d){c=c||document;b=b||"div[popupmenu]";d=d||function(e,f){return"#"+e.attr("popupmenu")};var
a=[];$(c).find(b).each(function(){var
e=$(this),f=$(c).find(d(e,c));a.push(PopupMenu.fromDom(f,e));f.addClass("popup")});return
a};var
faIconButton=function(a){a=a||{};a.tooltipConfig=a.tooltipConfig||{placement:"bottom"};a.classes=["icon-btn"].concat(a.classes||[]);if(a.disabled){a.classes.push("disabled")}var
b=['<a class="',a.classes.join("
"),'"',((a.title)?('
title="'+a.title+'"'):("")),((!a.disabled&&a.target)?('
target="'+a.target+'"'):("")),'
href="',((!a.disabled&&a.href)?(a.href):("javascript:void(0);")),'">','<span
class="fa
',a.faIcon,'"></span>',"</a>"].join("");var
c=$(b).tooltip(a.tooltipConfig);if(_.isFunction(a.onclick)){c.click(a.onclick)}return
c};function LoadingIndicator(a,c){var b=this;c=jQuery.extend({cover:false},c||{});function
d(){var e=['<div class="loading-indicator">','<div
class="loading-indicator-text">','<span class="fa fa-spinner
fa-spin fa-lg"></span>','<span
class="loading-indicator-message">loading...</span>',"</div>","</div>"].join("\n");var
g=$(e).hide().css(c.css||{position:"fixed"}),f=g.children(".loading-indicator-text");if(c.cover){g.css({"z-index":2,top:a.css("top"),bottom:a.css("bottom"),left:a.css("left"),right:a.css("right"),opacity:0.5,"background-color":"white","text-align":"center"});f=g.children(".loading-indicator-text").css({"margin-top":"20px"})}else{f=g.children(".loading-indicator-text").css({margin:"12px
0px 0px
10px",opacity:"0.85",color:"grey"});f.children(".loading-indicator-message").css({margin:"0px
8px 0px 0px","font-style":"italic"})}return
g}b.show=function(f,e,g){f=f||"loading...";e=e||"fast";b.$indicator=d().insertBefore(a);b.message(f);b.$indicator.fadeIn(e,g);return
b};b.message=function(e){b.$indicator.find("i").text(e)};b.hide=function(e,f){e=e||"fast";if(b.$indicator&&b.$indicator.size()){b.$indicator.fadeOut(e,function(){b.$indicator.remove();if(f){f()}})}else{if(f){f()}}return
b};return b}(function(){var b=window._l||function(d){return d};function a(k,q){var
e=27,n=13,d=$(k),f=true,h={initialVal:"",name:"search",placeholder:"search",classes:"",onclear:function(){},onfirstsearch:null,onsearch:function(r){},minSearchLen:0,escWillClear:true,oninit:function(){}};function
j(r){var
s=$(this).parent().children("input");s.val("");s.trigger("clear:searchInput");q.onclear()}function
p(s,r){$(this).trigger("search:searchInput",r);if(typeof
q.onfirstsearch==="function"&&f){f=false;q.onfirstsearch(r)}else{q.onsearch(r)}}function
g(){return['<input type="text" name="',q.name,'"
placeholder="',q.placeholder,'" ','class="search-query
',q.classes,'" ',"/>"].join("")}function
m(){return
$(g()).focus(function(r){$(this).select()}).keyup(function(s){s.preventDefault();s.stopPropagation();if(!$(this).val()){$(this).blur()}if(s.which===e&&q.escWillClear){j.call(this,s)}else{var
r=$(this).val();if((s.which===n)||(q.minSearchLen&&r.length>=q.minSearchLen)){p.call(this,s,r)}else{if(!r.length){j.call(this,s)}}}}).val(q.initialVal)}function
l(){return $(['<span class="search-clear fa fa-times-circle"
','title="',b("clear search
(esc)"),'"></span>'].join("")).tooltip({placement:"bottom"}).click(function(r){j.call(this,r)})}function
o(){return $(['<span class="search-loading fa fa-spinner fa-spin"
','title="',b("loading..."),'"></span>'].join("")).hide().tooltip({placement:"bottom"})}function
i(){d.find(".search-loading").toggle();d.find(".search-clear").toggle()}if(jQuery.type(q)==="string"){if(q==="toggle-loading"){i()}return
d}if(jQuery.type(q)==="object"){q=jQuery.extend(true,{},h,q)}return
d.addClass("search-input").prepend([m(),l(),o()])}jQuery.fn.extend({searchInput:function
c(d){return this.each(function(){return a(this,d)})}})}());(function(){function
c(o,n){this.currModeIndex=0;return
this._init(o,n)}c.prototype.DATA_KEY="mode-button";c.prototype.defaults={switchModesOnClick:true};c.prototype._init=function
j(o,n){n=n||{};this.$element=$(o);this.options=jQuery.extend(true,{},this.defaults,n);if(!n.modes){throw
new Error('ModeButton requires a "modes" array')}var
q=this;this.$element.click(function
p(r){q.callModeFn();if(q.options.switchModesOnClick){q._incModeIndex()}$(this).html(q.options.modes[q.currModeIndex].html)});return
this.reset()};c.prototype._incModeIndex=function
l(){this.currModeIndex+=1;if(this.currModeIndex>=this.options.modes.length){this.currModeIndex=0}return
this};c.prototype._getModeIndex=function f(n){for(var
o=0;o<this.options.modes.length;o+=1){if(this.options.modes[o].mode===n){return
o}}throw new Error("mode not found: "+n)};c.prototype._setModeByIndex=function
m(n){var o=this.options.modes[n];if(!o){throw new Error("mode index not found:
"+n)}this.currModeIndex=n;if(o.html){this.$element.html(o.html)}return
this};c.prototype.currentMode=function d(){return
this.options.modes[this.currModeIndex]};c.prototype.current=function i(){return
this.currentMode().mode};c.prototype.getMode=function g(n){if(!n){return
this.currentMode()}return
this.options.modes[(this._getModeIndex(n))]};c.prototype.hasMode=function b(n){try{return
!!this.getMode(n)}catch(o){}return false};c.prototype.setMode=function a(n){return
this._setModeByIndex(this._getModeIndex(n))};c.prototype.reset=function
h(){this.currModeIndex=0;if(this.options.initialMode){this.currModeIndex=this._getModeIndex(this.options.initialMode)}return
this._setModeByIndex(this.currModeIndex)};c.prototype.callModeFn=function e(n){var
o=this.getMode(n).onclick;if(o&&jQuery.type(o==="function")){return
o.call(this.$element.get(0))}return undefined};jQuery.fn.extend({modeButton:function
k(n){if(!this.size()){return this}if(jQuery.type(n)==="object"){return
this.map(function(){var r=$(this);r.data("mode-button",new c(r,n));return
this})}var p=$(this[0]),o=p.data("mode-button");if(!o){throw new
Error("modeButton needs an options object or string name of a
function")}if(o&&jQuery.type(n)==="string"){var
q=n;if(o&&jQuery.type(o[q])==="function"){return
o[q].apply(o,jQuery.makeArray(arguments).slice(1))}}return o}})}());function
dropDownSelect(b,c){c=c||((!_.isEmpty(b))?(b[0]):(""));var a=$(['<div
class="dropdown-select btn-group">','<button
type="button" class="btn btn-default">','<span
class="dropdown-select-selected">'+c+"</span>","</button>","</div>"].join("\n"));if(b&&b.length>1){a.find("button").addClass("dropdown-toggle").attr("data-toggle","dropdown").append('
<span class="caret"></span>');a.append(['<ul
class="dropdown-menu"
role="menu">',_.map(b,function(e){return['<li><a
href="javascript:void(0)">',e,"</a></li>"].join("")}).join("\n"),"</ul>"].join("\n"))}function
d(g){var
h=$(this),f=h.parents(".dropdown-select"),e=h.text();f.find(".dropdown-select-selected").text(e);f.trigger("change.dropdown-select",e)}a.find("a").click(d);return
a}(function(){function e(k,j){return
this.init(k,j)}e.prototype.DATA_KEY="filter-control";e.prototype.init=function
g(k,j){j=j||{filters:[]};this.$element=$(k).addClass("filter-control
btn-group");this.options=jQuery.extend(true,{},this.defaults,j);this.currFilter=this.options.filters[0];return
this.render()};e.prototype.render=function
d(){this.$element.empty().append([this._renderKeySelect(),this._renderOpSelect(),this._renderValueInput()]);return
this};e.prototype._renderKeySelect=function a(){var j=this;var
k=this.options.filters.map(function(l){return
l.key});this.$keySelect=dropDownSelect(k,this.currFilter.key).addClass("filter-control-key").on("change.dropdown-select",function(m,l){j.currFilter=_.findWhere(j.options.filters,{key:l});j.render()._triggerChange()});return
this.$keySelect};e.prototype._renderOpSelect=function i(){var
j=this,k=this.currFilter.ops;this.$opSelect=dropDownSelect(k,k[0]).addClass("filter-control-op").on("change.dropdown-select",function(m,l){j._triggerChange()});return
this.$opSelect};e.prototype._renderValueInput=function c(){var
j=this;if(this.currFilter.values){this.$valueSelect=dropDownSelect(this.currFilter.values,this.currFilter.values[0]).on("change.dropdown-select",function(l,k){j._triggerChange()})}else{this.$valueSelect=$("<input/>").addClass("form-control").on("change",function(k,l){j._triggerChange()})}this.$valueSelect.addClass("filter-control-value");return
this.$valueSelect};e.prototype.val=function b(){var
k=this.$element.find(".filter-control-key
.dropdown-select-selected").text(),m=this.$element.find(".filter-control-op
.dropdown-select-selected").text(),j=this.$element.find(".filter-control-value"),l=(j.hasClass("dropdown-select"))?(j.find(".dropdown-select-selected").text()):(j.val());return{key:k,op:m,value:l}};e.prototype._triggerChange=function
h(){this.$element.trigger("change.filter-control",this.val())};jQuery.fn.extend({filterControl:function
f(k){var j=jQuery.makeArray(arguments).slice(1);return this.map(function(){var
n=$(this),m=n.data(e.prototype.DATA_KEY);if(jQuery.type(k)==="object"){m=new
e(n,k);n.data(e.prototype.DATA_KEY,m)}if(m&&jQuery.type(k)==="string"){var
l=m[k];if(jQuery.type(l)==="function"){return l.apply(m,j)}}return
this})}})}());(function(){function i(o,n){this.numPages=null;this.currPage=0;return
this.init(o,n)}i.prototype.DATA_KEY="pagination";i.prototype.defaults={startingPage:0,perPage:20,totalDataSize:null,currDataSize:null};i.prototype.init=function
g(n,o){o=o||{};this.$element=n;this.options=jQuery.extend(true,{},this.defaults,o);this.currPage=this.options.startingPage;if(this.options.totalDataSize!==null){this.numPages=Math.ceil(this.options.totalDataSize/this.options.perPage);if(this.currPage>=this.numPages){this.currPage=this.numPages-1}}this.$element.data(i.prototype.DATA_KEY,this);this._render();return
this};function m(n){return $(['<li><a
href="javascript:void(0);">',n,"</a></li>"].join(""))}i.prototype._render=function
e(){if(this.options.totalDataSize===0){return this}if(this.numPages===1){return
this}if(this.numPages>0){this._renderPages();this._scrollToActivePage()}else{this._renderPrevNext()}return
this};i.prototype._renderPrevNext=function b(){var
o=this,p=m("Prev"),n=m("Next"),q=$("<ul/>").addClass("pagination
pagination-prev-next");if(this.currPage===0){p.addClass("disabled")}else{p.click(function(){o.prevPage()})}if((this.numPages&&this.currPage===(this.numPages-1))||(this.options.currDataSize&&this.options.currDataSize<this.options.perPage)){n.addClass("disabled")}else{n.click(function(){o.nextPage()})}this.$element.html(q.append([p,n]));return
this.$element};i.prototype._renderPages=function a(){var
n=this,q=$("<div>").addClass("pagination-scroll-container"),s=$("<ul/>").addClass("pagination
pagination-page-list"),r=function(t){n.goToPage($(this).data("page"))};for(var
o=0;o<this.numPages;o+=1){var
p=m(o+1).attr("data-page",o).click(r);if(o===this.currPage){p.addClass("active")}s.append(p)}return
this.$element.html(q.html(s))};i.prototype._scrollToActivePage=function l(){var
p=this.$element.find(".pagination-scroll-container");if(!p.size()){return
this}var
o=this.$element.find("li.active"),n=p.width()/2;p.scrollLeft(p.scrollLeft()+o.position().left-n);return
this};i.prototype.goToPage=function
j(n){if(n<=0){n=0}if(this.numPages&&n>=this.numPages){n=this.numPages-1}if(n===this.currPage){return
this}this.currPage=n;this.$element.trigger("pagination.page-change",this.currPage);this._render();return
this};i.prototype.prevPage=function c(){return
this.goToPage(this.currPage-1)};i.prototype.nextPage=function h(){return
this.goToPage(this.currPage+1)};i.prototype.page=function f(){return
this.currPage};i.create=function k(n,o){return new
i(n,o)};jQuery.fn.extend({pagination:function d(o){var
n=jQuery.makeArray(arguments).slice(1);if(jQuery.type(o)==="object"){return
this.map(function(){i.create($(this),o);return this})}var
q=$(this[0]),r=q.data(i.prototype.DATA_KEY);if(r){if(jQuery.type(o)==="string"){var
p=r[o];if(jQuery.type(p)==="function"){return p.apply(r,n)}}else{return
r}}return undefined}})}());(function(){var
g={renameColumns:false,columnNames:[],commentChar:"#",hideCommentRows:false,includePrompts:true,topLeftContent:"Columns:"},s="peek-control.change",t="peek-control.rename",l="peek-control",v="control",f="control-prompt",c="selected",n="disabled",u="button",q="renamable-header",p="column-index",a="column-name";function
i(w){if(w.disabled&&jQuery.type(w.disabled)!=="array"){throw new
Error('"disabled" must be defined as an array of indeces:
'+JSON.stringify(w))}if(w.multiselect&&w.selected&&jQuery.type(w.selected)!=="array"){throw
new Error('Mulitselect rows need an array for "selected":
'+JSON.stringify(w))}if(!w.label||!w.id){throw new Error("Peek controls need a
label and id for each control row:
"+JSON.stringify(w))}if(w.disabled&&w.disabled.indexOf(w.selected)!==-1){throw
new Error("Selected column is in the list of disabled columns:
"+JSON.stringify(w))}return w}function o(x,w){return
$("<div/>").addClass(u).text(x.label)}function k(x,w){var
y=$("<td/>").html(o(x,w)).attr("data-"+p,w);if(x.disabled&&x.disabled.indexOf(w)!==-1){y.addClass(n)}return
y}function e(y,z,w){var
x=y.children("."+u);if(y.hasClass(c)){x.html((z.selectedText!==undefined)?(z.selectedText):(z.label))}else{x.html((z.unselectedText!==undefined)?(z.unselectedText):(z.label))}}function
h(z,x){var
y=k(z,x);if(z.selected===x){y.addClass(c)}e(y,z,x);if(!y.hasClass(n)){y.click(function
w(D){var E=$(this);if(!E.hasClass(c)){var
A=E.parent().children("."+c).removeClass(c);A.each(function(){e($(this),z,x)});E.addClass(c);e(E,z,x);var
C={},B=E.parent().attr("id"),F=E.data(p);C[B]=F;E.parents(".peek").trigger(s,C)}})}return
y}function m(z,x){var
y=k(z,x);if(z.selected&&z.selected.indexOf(x)!==-1){y.addClass(c)}e(y,z,x);if(!y.hasClass(n)){y.click(function
w(D){var E=$(this);E.toggleClass(c);e(E,z,x);var
C=E.parent().find("."+c).map(function(G,H){return $(H).data(p)});var
B={},A=E.parent().attr("id"),F=jQuery.makeArray(C);B[A]=F;E.parents(".peek").trigger(s,B)})}return
y}function j(y,z){var w=[];for(var
x=0;x<y;x+=1){w.push(z.multiselect?m(z,x):h(z,x))}return w}function r(y,z,x){var
A=$("<tr/>").attr("id",z.id).addClass(v);if(x){var
w=$("<td/>").addClass(f).text(z.label+":");A.append(w)}A.append(j(y,z));return
A}function b(E){E=jQuery.extend(true,{},g,E);var
D=$(this).addClass(l),A=D.find("table"),z=A.find("th").size(),C=A.find("tr").size(),w=A.find("td[colspan]").map(function(H,F){var
G=$(this);if(G.text()&&G.text().match(new
RegExp("^"+E.commentChar))){return
$(this).css("color","grey").parent().get(0)}return
null});if(E.hideCommentRows){w.hide();C-=w.size()}if(E.includePrompts){var
y=$("<th/>").addClass("top-left").text(E.topLeftContent).attr("rowspan",C);A.find("tr").first().prepend(y)}var
B=A.find("th:not(.top-left)").each(function(G,I){var
H=$(this),J=H.text().replace(/^\d+\.*/,""),F=E.columnNames[G]||J;H.attr("data-"+a,F).text((G+1)+((F)?("."+F):("")))});if(E.renameColumns){B.addClass(q).click(function
x(){var G=$(this),F=G.index()+(E.includePrompts?0:1),I=G.data(a),H=prompt("New column
name:",I);if(H!==null&&H!==I){G.text(F+(H?("."+H):"")).data(a,H).attr("data-",a,H);var
J=jQuery.makeArray(G.parent().children("th:not(.top-left)").map(function(){return
$(this).data(a)}));G.parents(".peek").trigger(t,J)}})}E.controls.forEach(function(G,F){i(G);var
H=r(z,G,E.includePrompts);A.find("tbody").append(H)});return
this}jQuery.fn.extend({peekControl:function d(w){return this.map(function(){return
b.call(this,w)})}})}());
\ No newline at end of file
+var
IconButton=Backbone.Model.extend({defaults:{title:"",icon_class:"",on_click:null,menu_options:null,is_menu_button:true,id:null,href:null,target:null,enabled:true,visible:true,tooltip_config:{}}});var
IconButtonView=Backbone.View.extend({initialize:function(){this.model.attributes.tooltip_config={placement:"bottom"};this.model.bind("change",this.render,this)},render:function(){this.$el.tooltip("hide");var
a=this.template(this.model.toJSON());a.tooltip(this.model.get("tooltip_config"));this.$el.replaceWith(a);this.setElement(a);return
this},events:{click:"click"},click:function(a){if(_.isFunction(this.model.get("on_click"))){this.model.get("on_click")(a);return
false}return true},template:function(b){var a='title="'+b.title+'"
class="icon-button';if(b.is_menu_button){a+=" menu-button"}a+="
"+b.icon_class;if(!b.enabled){a+="_disabled"}a+='"';if(b.id){a+='
id="'+b.id+'"'}a+='
href="'+b.href+'"';if(b.target){a+='
target="'+b.target+'"'}if(!b.visible){a+=' style="display:
none;"'}if(b.enabled){a="<a
"+a+"/>"}else{a="<span "+a+"/>"}return
$(a)}});var IconButtonCollection=Backbone.Collection.extend({model:IconButton});var
IconButtonMenuView=Backbone.View.extend({tagName:"div",initialize:function(){this.render()},render:function(){var
a=this;this.collection.each(function(d){var
b=$("<a/>").attr("href","javascript:void(0)").attr("title",d.attributes.title).addClass("icon-button
menu-button").addClass(d.attributes.icon_class).appendTo(a.$el).click(d.attributes.on_click);if(d.attributes.tooltip_config){b.tooltip(d.attributes.tooltip_config)}var
c=d.get("options");if(c){make_popupmenu(b,c)}});return this}});var
create_icon_buttons_menu=function(b,a){if(!a){a={}}var c=new
IconButtonCollection(_.map(b,function(d){return new IconButton(_.extend(d,a))}));return
new IconButtonMenuView({collection:c})};var Grid=Backbone.Collection.extend({});var
GridView=Backbone.View.extend({});var
PopupMenu=Backbone.View.extend({initialize:function(b,a){this.$button=b;if(!this.$button.size()){this.$button=$("<div/>")}this.options=a||[];var
c=this;this.$button.click(function(d){$(".popmenu-wrapper").remove();c._renderAndShow(d);return
false})},_renderAndShow:function(a){this.render();this.$el.appendTo("body").css(this._getShownPosition(a)).show();this._setUpCloseBehavior()},render:function(){this.$el.addClass("popmenu-wrapper").hide().css({position:"absolute"}).html(this.template(this.$button.attr("id"),this.options));if(this.options.length){var
a=this;this.$el.find("li").each(function(c,b){var
d=a.options[c];if(d.func){$(this).children("a.popupmenu-option").click(function(e){d.func.call(a,e,d)})}})}return
this},template:function(b,a){return['<ul id="',b,'-menu"
class="dropdown-menu">',this._templateOptions(a),"</ul>"].join("")},_templateOptions:function(a){if(!a.length){return"<li>(no
options)</li>"}return _.map(a,function(d){if(d.divider){return'<li
class="divider"></li>'}else{if(d.header){return['<li
class="head"><a
href="javascript:void(0);">',d.html,"</a></li>"].join("")}}var
c=d.href||"javascript:void(0);",e=(d.target)?('
target="'+d.target+'"'):(""),b=(d.checked)?('<span
class="fa
fa-check"></span>'):("");return['<li><a
class="popupmenu-option"
href="',c,'"',e,">",b,d.html,"</a></li>"].join("")}).join("")},_getShownPosition:function(b){var
c=this.$el.width();var
a=b.pageX-c/2;a=Math.min(a,$(document).scrollLeft()+$(window).width()-c-5);a=Math.max(a,$(document).scrollLeft()+5);return{top:b.pageY,left:a}},_setUpCloseBehavior:function(){var
c=this;function
a(e){$(document).off("click.close_popup");if(window.parent!==window){try{$(window.parent.document).off("click.close_popup")}catch(d){}}else{try{$("iframe#galaxy_main").contents().off("click.close_popup")}catch(d){}}c.remove()}$("html").one("click.close_popup",a);if(window.parent!==window){try{$(window.parent.document).find("html").one("click.close_popup",a)}catch(b){}}else{try{$("iframe#galaxy_main").contents().one("click.close_popup",a)}catch(b){}}},addItem:function(b,a){a=(a>=0)?a:this.options.length;this.options.splice(a,0,b);return
this},removeItem:function(a){if(a>=0){this.options.splice(a,1)}return
this},findIndexByHtml:function(b){for(var
a=0;a<this.options.length;a++){if(_.has(this.options[a],"html")&&(this.options[a].html===b)){return
a}}return null},findItemByHtml:function(a){return
this.options[(this.findIndexByHtml(a))]},toString:function(){return"PopupMenu"}});PopupMenu.create=function
_create(b,a){return new PopupMenu(b,a)};PopupMenu.make_popupmenu=function(b,c){var
a=[];_.each(c,function(f,d){var
e={html:d};if(f===null){e.header=true}else{if(jQuery.type(f)==="function"){e.func=f}}a.push(e)});return
new
PopupMenu($(b),a)};PopupMenu.convertLinksToOptions=function(c,a){c=$(c);a=a||"a";var
b=[];c.find(a).each(function(g,e){var
f={},d=$(g);f.html=d.text();if(d.attr("href")){var
j=d.attr("href"),k=d.attr("target"),h=d.attr("confirm");f.func=function(){if((h)&&(!confirm(h))){return}switch(k){case"_parent":window.parent.location=j;break;case"_top":window.top.location=j;break;default:window.location=j}}}b.push(f)});return
b};PopupMenu.fromExistingDom=function(d,c,a){d=$(d);c=$(c);var
b=PopupMenu.convertLinksToOptions(c,a);c.remove();return new
PopupMenu(d,b)};PopupMenu.make_popup_menus=function(c,b,d){c=c||document;b=b||"div[popupmenu]";d=d||function(e,f){return"#"+e.attr("popupmenu")};var
a=[];$(c).find(b).each(function(){var
e=$(this),f=$(c).find(d(e,c));a.push(PopupMenu.fromDom(f,e));f.addClass("popup")});return
a};var
faIconButton=function(a){a=a||{};a.tooltipConfig=a.tooltipConfig||{placement:"bottom"};a.classes=["icon-btn"].concat(a.classes||[]);if(a.disabled){a.classes.push("disabled")}var
b=['<a class="',a.classes.join("
"),'"',((a.title)?('
title="'+a.title+'"'):("")),((!a.disabled&&a.target)?('
target="'+a.target+'"'):("")),'
href="',((!a.disabled&&a.href)?(a.href):("javascript:void(0);")),'">','<span
class="fa
',a.faIcon,'"></span>',"</a>"].join("");var
c=$(b).tooltip(a.tooltipConfig);if(_.isFunction(a.onclick)){c.click(a.onclick)}return
c};function LoadingIndicator(a,c){var b=this;c=jQuery.extend({cover:false},c||{});function
d(){var e=['<div class="loading-indicator">','<div
class="loading-indicator-text">','<span class="fa fa-spinner
fa-spin fa-lg"></span>','<span
class="loading-indicator-message">loading...</span>',"</div>","</div>"].join("\n");var
g=$(e).hide().css(c.css||{position:"fixed"}),f=g.children(".loading-indicator-text");if(c.cover){g.css({"z-index":2,top:a.css("top"),bottom:a.css("bottom"),left:a.css("left"),right:a.css("right"),opacity:0.5,"background-color":"white","text-align":"center"});f=g.children(".loading-indicator-text").css({"margin-top":"20px"})}else{f=g.children(".loading-indicator-text").css({margin:"12px
0px 0px
10px",opacity:"0.85",color:"grey"});f.children(".loading-indicator-message").css({margin:"0px
8px 0px 0px","font-style":"italic"})}return
g}b.show=function(f,e,g){f=f||"loading...";e=e||"fast";a.parent().find(".loading-indicator").remove();b.$indicator=d().insertBefore(a);b.message(f);b.$indicator.fadeIn(e,g);return
b};b.message=function(e){b.$indicator.find("i").text(e)};b.hide=function(e,f){e=e||"fast";if(b.$indicator&&b.$indicator.size()){b.$indicator.fadeOut(e,function(){b.$indicator.remove();if(f){f()}})}else{if(f){f()}}return
b};return b}(function(){var b=window._l||function(d){return d};function a(k,q){var
e=27,n=13,d=$(k),f=true,h={initialVal:"",name:"search",placeholder:"search",classes:"",onclear:function(){},onfirstsearch:null,onsearch:function(r){},minSearchLen:0,escWillClear:true,oninit:function(){}};function
j(r){var
s=$(this).parent().children("input");s.val("");s.trigger("clear:searchInput");q.onclear()}function
p(s,r){$(this).trigger("search:searchInput",r);if(typeof
q.onfirstsearch==="function"&&f){f=false;q.onfirstsearch(r)}else{q.onsearch(r)}}function
g(){return['<input type="text" name="',q.name,'"
placeholder="',q.placeholder,'" ','class="search-query
',q.classes,'" ',"/>"].join("")}function
m(){return
$(g()).focus(function(r){$(this).select()}).keyup(function(s){s.preventDefault();s.stopPropagation();if(!$(this).val()){$(this).blur()}if(s.which===e&&q.escWillClear){j.call(this,s)}else{var
r=$(this).val();if((s.which===n)||(q.minSearchLen&&r.length>=q.minSearchLen)){p.call(this,s,r)}else{if(!r.length){j.call(this,s)}}}}).val(q.initialVal)}function
l(){return $(['<span class="search-clear fa fa-times-circle"
','title="',b("clear search
(esc)"),'"></span>'].join("")).tooltip({placement:"bottom"}).click(function(r){j.call(this,r)})}function
o(){return $(['<span class="search-loading fa fa-spinner fa-spin"
','title="',b("loading..."),'"></span>'].join("")).hide().tooltip({placement:"bottom"})}function
i(){d.find(".search-loading").toggle();d.find(".search-clear").toggle()}if(jQuery.type(q)==="string"){if(q==="toggle-loading"){i()}return
d}if(jQuery.type(q)==="object"){q=jQuery.extend(true,{},h,q)}return
d.addClass("search-input").prepend([m(),l(),o()])}jQuery.fn.extend({searchInput:function
c(d){return this.each(function(){return a(this,d)})}})}());(function(){function
c(o,n){this.currModeIndex=0;return
this._init(o,n)}c.prototype.DATA_KEY="mode-button";c.prototype.defaults={switchModesOnClick:true};c.prototype._init=function
j(o,n){n=n||{};this.$element=$(o);this.options=jQuery.extend(true,{},this.defaults,n);if(!n.modes){throw
new Error('ModeButton requires a "modes" array')}var
q=this;this.$element.click(function
p(r){q.callModeFn();if(q.options.switchModesOnClick){q._incModeIndex()}$(this).html(q.options.modes[q.currModeIndex].html)});return
this.reset()};c.prototype._incModeIndex=function
l(){this.currModeIndex+=1;if(this.currModeIndex>=this.options.modes.length){this.currModeIndex=0}return
this};c.prototype._getModeIndex=function f(n){for(var
o=0;o<this.options.modes.length;o+=1){if(this.options.modes[o].mode===n){return
o}}throw new Error("mode not found: "+n)};c.prototype._setModeByIndex=function
m(n){var o=this.options.modes[n];if(!o){throw new Error("mode index not found:
"+n)}this.currModeIndex=n;if(o.html){this.$element.html(o.html)}return
this};c.prototype.currentMode=function d(){return
this.options.modes[this.currModeIndex]};c.prototype.current=function i(){return
this.currentMode().mode};c.prototype.getMode=function g(n){if(!n){return
this.currentMode()}return
this.options.modes[(this._getModeIndex(n))]};c.prototype.hasMode=function b(n){try{return
!!this.getMode(n)}catch(o){}return false};c.prototype.setMode=function a(n){return
this._setModeByIndex(this._getModeIndex(n))};c.prototype.reset=function
h(){this.currModeIndex=0;if(this.options.initialMode){this.currModeIndex=this._getModeIndex(this.options.initialMode)}return
this._setModeByIndex(this.currModeIndex)};c.prototype.callModeFn=function e(n){var
o=this.getMode(n).onclick;if(o&&jQuery.type(o==="function")){return
o.call(this.$element.get(0))}return undefined};jQuery.fn.extend({modeButton:function
k(n){if(!this.size()){return this}if(jQuery.type(n)==="object"){return
this.map(function(){var r=$(this);r.data("mode-button",new c(r,n));return
this})}var p=$(this[0]),o=p.data("mode-button");if(!o){throw new
Error("modeButton needs an options object or string name of a
function")}if(o&&jQuery.type(n)==="string"){var
q=n;if(o&&jQuery.type(o[q])==="function"){return
o[q].apply(o,jQuery.makeArray(arguments).slice(1))}}return o}})}());function
dropDownSelect(b,c){c=c||((!_.isEmpty(b))?(b[0]):(""));var a=$(['<div
class="dropdown-select btn-group">','<button
type="button" class="btn btn-default">','<span
class="dropdown-select-selected">'+c+"</span>","</button>","</div>"].join("\n"));if(b&&b.length>1){a.find("button").addClass("dropdown-toggle").attr("data-toggle","dropdown").append('
<span class="caret"></span>');a.append(['<ul
class="dropdown-menu"
role="menu">',_.map(b,function(e){return['<li><a
href="javascript:void(0)">',e,"</a></li>"].join("")}).join("\n"),"</ul>"].join("\n"))}function
d(g){var
h=$(this),f=h.parents(".dropdown-select"),e=h.text();f.find(".dropdown-select-selected").text(e);f.trigger("change.dropdown-select",e)}a.find("a").click(d);return
a}(function(){function e(k,j){return
this.init(k,j)}e.prototype.DATA_KEY="filter-control";e.prototype.init=function
g(k,j){j=j||{filters:[]};this.$element=$(k).addClass("filter-control
btn-group");this.options=jQuery.extend(true,{},this.defaults,j);this.currFilter=this.options.filters[0];return
this.render()};e.prototype.render=function
d(){this.$element.empty().append([this._renderKeySelect(),this._renderOpSelect(),this._renderValueInput()]);return
this};e.prototype._renderKeySelect=function a(){var j=this;var
k=this.options.filters.map(function(l){return
l.key});this.$keySelect=dropDownSelect(k,this.currFilter.key).addClass("filter-control-key").on("change.dropdown-select",function(m,l){j.currFilter=_.findWhere(j.options.filters,{key:l});j.render()._triggerChange()});return
this.$keySelect};e.prototype._renderOpSelect=function i(){var
j=this,k=this.currFilter.ops;this.$opSelect=dropDownSelect(k,k[0]).addClass("filter-control-op").on("change.dropdown-select",function(m,l){j._triggerChange()});return
this.$opSelect};e.prototype._renderValueInput=function c(){var
j=this;if(this.currFilter.values){this.$valueSelect=dropDownSelect(this.currFilter.values,this.currFilter.values[0]).on("change.dropdown-select",function(l,k){j._triggerChange()})}else{this.$valueSelect=$("<input/>").addClass("form-control").on("change",function(k,l){j._triggerChange()})}this.$valueSelect.addClass("filter-control-value");return
this.$valueSelect};e.prototype.val=function b(){var
k=this.$element.find(".filter-control-key
.dropdown-select-selected").text(),m=this.$element.find(".filter-control-op
.dropdown-select-selected").text(),j=this.$element.find(".filter-control-value"),l=(j.hasClass("dropdown-select"))?(j.find(".dropdown-select-selected").text()):(j.val());return{key:k,op:m,value:l}};e.prototype._triggerChange=function
h(){this.$element.trigger("change.filter-control",this.val())};jQuery.fn.extend({filterControl:function
f(k){var j=jQuery.makeArray(arguments).slice(1);return this.map(function(){var
n=$(this),m=n.data(e.prototype.DATA_KEY);if(jQuery.type(k)==="object"){m=new
e(n,k);n.data(e.prototype.DATA_KEY,m)}if(m&&jQuery.type(k)==="string"){var
l=m[k];if(jQuery.type(l)==="function"){return l.apply(m,j)}}return
this})}})}());(function(){function i(o,n){this.numPages=null;this.currPage=0;return
this.init(o,n)}i.prototype.DATA_KEY="pagination";i.prototype.defaults={startingPage:0,perPage:20,totalDataSize:null,currDataSize:null};i.prototype.init=function
g(n,o){o=o||{};this.$element=n;this.options=jQuery.extend(true,{},this.defaults,o);this.currPage=this.options.startingPage;if(this.options.totalDataSize!==null){this.numPages=Math.ceil(this.options.totalDataSize/this.options.perPage);if(this.currPage>=this.numPages){this.currPage=this.numPages-1}}this.$element.data(i.prototype.DATA_KEY,this);this._render();return
this};function m(n){return $(['<li><a
href="javascript:void(0);">',n,"</a></li>"].join(""))}i.prototype._render=function
e(){if(this.options.totalDataSize===0){return this}if(this.numPages===1){return
this}if(this.numPages>0){this._renderPages();this._scrollToActivePage()}else{this._renderPrevNext()}return
this};i.prototype._renderPrevNext=function b(){var
o=this,p=m("Prev"),n=m("Next"),q=$("<ul/>").addClass("pagination
pagination-prev-next");if(this.currPage===0){p.addClass("disabled")}else{p.click(function(){o.prevPage()})}if((this.numPages&&this.currPage===(this.numPages-1))||(this.options.currDataSize&&this.options.currDataSize<this.options.perPage)){n.addClass("disabled")}else{n.click(function(){o.nextPage()})}this.$element.html(q.append([p,n]));return
this.$element};i.prototype._renderPages=function a(){var
n=this,q=$("<div>").addClass("pagination-scroll-container"),s=$("<ul/>").addClass("pagination
pagination-page-list"),r=function(t){n.goToPage($(this).data("page"))};for(var
o=0;o<this.numPages;o+=1){var
p=m(o+1).attr("data-page",o).click(r);if(o===this.currPage){p.addClass("active")}s.append(p)}return
this.$element.html(q.html(s))};i.prototype._scrollToActivePage=function l(){var
p=this.$element.find(".pagination-scroll-container");if(!p.size()){return
this}var
o=this.$element.find("li.active"),n=p.width()/2;p.scrollLeft(p.scrollLeft()+o.position().left-n);return
this};i.prototype.goToPage=function
j(n){if(n<=0){n=0}if(this.numPages&&n>=this.numPages){n=this.numPages-1}if(n===this.currPage){return
this}this.currPage=n;this.$element.trigger("pagination.page-change",this.currPage);this._render();return
this};i.prototype.prevPage=function c(){return
this.goToPage(this.currPage-1)};i.prototype.nextPage=function h(){return
this.goToPage(this.currPage+1)};i.prototype.page=function f(){return
this.currPage};i.create=function k(n,o){return new
i(n,o)};jQuery.fn.extend({pagination:function d(o){var
n=jQuery.makeArray(arguments).slice(1);if(jQuery.type(o)==="object"){return
this.map(function(){i.create($(this),o);return this})}var
q=$(this[0]),r=q.data(i.prototype.DATA_KEY);if(r){if(jQuery.type(o)==="string"){var
p=r[o];if(jQuery.type(p)==="function"){return p.apply(r,n)}}else{return
r}}return undefined}})}());(function(){var
g={renameColumns:false,columnNames:[],commentChar:"#",hideCommentRows:false,includePrompts:true,topLeftContent:"Columns:"},s="peek-control.change",t="peek-control.rename",l="peek-control",v="control",f="control-prompt",c="selected",n="disabled",u="button",q="renamable-header",p="column-index",a="column-name";function
i(w){if(w.disabled&&jQuery.type(w.disabled)!=="array"){throw new
Error('"disabled" must be defined as an array of indeces:
'+JSON.stringify(w))}if(w.multiselect&&w.selected&&jQuery.type(w.selected)!=="array"){throw
new Error('Mulitselect rows need an array for "selected":
'+JSON.stringify(w))}if(!w.label||!w.id){throw new Error("Peek controls need a
label and id for each control row:
"+JSON.stringify(w))}if(w.disabled&&w.disabled.indexOf(w.selected)!==-1){throw
new Error("Selected column is in the list of disabled columns:
"+JSON.stringify(w))}return w}function o(x,w){return
$("<div/>").addClass(u).text(x.label)}function k(x,w){var
y=$("<td/>").html(o(x,w)).attr("data-"+p,w);if(x.disabled&&x.disabled.indexOf(w)!==-1){y.addClass(n)}return
y}function e(y,z,w){var
x=y.children("."+u);if(y.hasClass(c)){x.html((z.selectedText!==undefined)?(z.selectedText):(z.label))}else{x.html((z.unselectedText!==undefined)?(z.unselectedText):(z.label))}}function
h(z,x){var
y=k(z,x);if(z.selected===x){y.addClass(c)}e(y,z,x);if(!y.hasClass(n)){y.click(function
w(D){var E=$(this);if(!E.hasClass(c)){var
A=E.parent().children("."+c).removeClass(c);A.each(function(){e($(this),z,x)});E.addClass(c);e(E,z,x);var
C={},B=E.parent().attr("id"),F=E.data(p);C[B]=F;E.parents(".peek").trigger(s,C)}})}return
y}function m(z,x){var
y=k(z,x);if(z.selected&&z.selected.indexOf(x)!==-1){y.addClass(c)}e(y,z,x);if(!y.hasClass(n)){y.click(function
w(D){var E=$(this);E.toggleClass(c);e(E,z,x);var
C=E.parent().find("."+c).map(function(G,H){return $(H).data(p)});var
B={},A=E.parent().attr("id"),F=jQuery.makeArray(C);B[A]=F;E.parents(".peek").trigger(s,B)})}return
y}function j(y,z){var w=[];for(var
x=0;x<y;x+=1){w.push(z.multiselect?m(z,x):h(z,x))}return w}function r(y,z,x){var
A=$("<tr/>").attr("id",z.id).addClass(v);if(x){var
w=$("<td/>").addClass(f).text(z.label+":");A.append(w)}A.append(j(y,z));return
A}function b(E){E=jQuery.extend(true,{},g,E);var
D=$(this).addClass(l),A=D.find("table"),z=A.find("th").size(),C=A.find("tr").size(),w=A.find("td[colspan]").map(function(H,F){var
G=$(this);if(G.text()&&G.text().match(new
RegExp("^"+E.commentChar))){return
$(this).css("color","grey").parent().get(0)}return
null});if(E.hideCommentRows){w.hide();C-=w.size()}if(E.includePrompts){var
y=$("<th/>").addClass("top-left").text(E.topLeftContent).attr("rowspan",C);A.find("tr").first().prepend(y)}var
B=A.find("th:not(.top-left)").each(function(G,I){var
H=$(this),J=H.text().replace(/^\d+\.*/,""),F=E.columnNames[G]||J;H.attr("data-"+a,F).text((G+1)+((F)?("."+F):("")))});if(E.renameColumns){B.addClass(q).click(function
x(){var G=$(this),F=G.index()+(E.includePrompts?0:1),I=G.data(a),H=prompt("New column
name:",I);if(H!==null&&H!==I){G.text(F+(H?("."+H):"")).data(a,H).attr("data-",a,H);var
J=jQuery.makeArray(G.parent().children("th:not(.top-left)").map(function(){return
$(this).data(a)}));G.parents(".peek").trigger(t,J)}})}E.controls.forEach(function(G,F){i(G);var
H=r(z,G,E.includePrompts);A.find("tbody").append(H)});return
this}jQuery.fn.extend({peekControl:function d(w){return this.map(function(){return
b.call(this,w)})}})}());
\ No newline at end of file
diff -r c4e19939b6a300c555a9fdab10b7372d8a8a73a1 -r
11e6f06278126edb16c6333e2eddf6dd1a9772b2 static/scripts/packed/mvc/ui/ui-misc.js
--- a/static/scripts/packed/mvc/ui/ui-misc.js
+++ b/static/scripts/packed/mvc/ui/ui-misc.js
@@ -1,1 +1,1 @@
-define(["utils/utils","mvc/ui/ui-select-default","mvc/ui/ui-checkbox","mvc/ui/ui-radiobutton","mvc/ui/ui-button-menu","mvc/ui/ui-modal"],function(l,b,e,m,p,n){var
d=Backbone.View.extend({optionsDefault:{url:"",cls:""},initialize:function(q){this.options=l.merge(q,this.optionsDefault);this.setElement(this._template(this.options))},_template:function(q){return'<img
class="ui-image '+q.cls+'"
src="'+q.url+'"/>'}});var
k=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(q){this.options=l.merge(q,this.optionsDefault);this.setElement(this._template(this.options))},title:function(q){this.$el.html(q)},_template:function(q){return'<label
class="ui-label
'+q.cls+'">'+q.title+"</label>"},value:function(){return
options.title}});var
c=Backbone.View.extend({optionsDefault:{floating:"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""},initialize:function(q){this.options=l.merge(q,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).tooltip({title:q.tooltip,placement:"bottom"})},_template:function(q){return'<div><span
class="fa '+q.icon+'"
class="ui-icon"/> '+q.title+"</div>"}});var
g=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"btn
btn-default",icon:""},initialize:function(q){this.options=l.merge(q,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",q.onclick);$(this.el).tooltip({title:q.tooltip,placement:"bottom"})},_template:function(q){var
r='<button id="'+q.id+'" type="submit"
style="float: '+q.floating+';" type="button"
class="ui-button '+q.cls+'">';if(q.icon){r+='<i
class="icon fa
'+q.icon+'"></i> '}r+=q.title+"</button>";return
r}});var
h=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"icon-btn",icon:"",tooltip:"",onclick:null},initialize:function(q){this.options=l.merge(q,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",q.onclick);$(this.el).tooltip({title:q.tooltip,placement:"bottom"})},_template:function(q){var
r="";if(q.title){r="width: auto;"}var s='<div
id="'+q.id+'" style="float: '+q.floating+";
"+r+'" class="ui-button-icon
'+q.cls+'">';if(q.title){s+='<div
class="button"><i class="icon fa
'+q.icon+'"/> <span
class="title">'+q.title+"</span></div>"}else{s+='<i
class="icon fa '+q.icon+'"/>'}s+="</div>";return
s}});var
f=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(q){this.options=l.merge(q,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",q.onclick)},_template:function(q){return'<div><a
href="javascript:void(0)" class="ui-anchor
'+q.cls+'">'+q.title+"</a></div>"}});var
o=Backbone.View.extend({optionsDefault:{message:"",status:"info",persistent:false},initialize:function(q){this.options=l.merge(q,this.optionsDefault);this.setElement("<div></div>")},update:function(r){this.options=l.merge(r,this.optionsDefault);if(r.message!=""){this.$el.html(this._template(this.options));this.$el.find(".alert").append(r.message);this.$el.fadeIn();if(!r.persistent){var
q=this;window.setTimeout(function(){if(q.$el.is(":visible")){q.$el.fadeOut()}else{q.$el.hide()}},3000)}}else{this.$el.fadeOut()}},_template:function(q){return'<div
class="ui-message alert alert-'+q.status+'"/>'}});var
a=Backbone.View.extend({optionsDefault:{onclick:null,searchword:""},initialize:function(r){this.options=l.merge(r,this.optionsDefault);this.setElement(this._template(this.options));var
q=this;if(this.options.onclick){this.$el.on("submit",function(t){var
s=q.$el.find("#search");q.options.onclick(s.val())})}},_template:function(q){return'<div
class="ui-search"><form onsubmit="return false;"><input
id="search" class="form-control input-sm" type="text"
name="search" placeholder="Search..."
value="'+q.searchword+'"><button type="submit"
class="btn search-btn"><i class="fa
fa-search"></i></button></form></div>'}});var
j=Backbone.View.extend({optionsDefault:{value:"",type:"text",placeholder:"",disabled:false,visible:true,cls:""},initialize:function(r){this.options=l.merge(r,this.optionsDefault);this.setElement(this._template(this.options));if(this.options.disabled){this.$el.prop("disabled",true)}if(!this.options.visible){this.$el.hide()}var
q=this;this.$el.on("input",function(){if(q.options.onchange){q.options.onchange(q.$el.val())}})},value:function(q){if(q!==undefined){this.$el.val(q)}return
this.$el.val()},_template:function(q){return'<input id="'+q.id+'"
type="'+q.type+'" value="'+q.value+'"
placeholder="'+q.placeholder+'" class="ui-input
'+q.cls+'">'}});var
i=Backbone.View.extend({optionsDefault:{value:"",type:"text",placeholder:"",disabled:false,visible:true,cls:""},initialize:function(r){this.options=l.merge(r,this.optionsDefault);this.setElement(this._template(this.options));if(this.options.disabled){this.$el.prop("disabled",true)}if(!this.options.visible){this.$el.hide()}var
q=this;this.$el.on("input",function(){if(q.options.onchange){q.options.onchange(q.$el.val())}})},value:function(q){if(q!==undefined){this.$el.val(q)}return
this.$el.val()},_template:function(q){return'<textarea
id="'+q.id+'" class="ui-textarea '+q.cls+'"
rows="5"></textarea>'}});return{Anchor:f,Button:g,ButtonIcon:h,ButtonMenu:p,Icon:c,Image:d,Input:j,Label:k,Message:o,Modal:n,RadioButton:m,Checkbox:e,Searchbox:a,Select:b,Textarea:i}});
\ No newline at end of file
+define(["utils/utils","mvc/ui/ui-select-default","mvc/ui/ui-checkbox","mvc/ui/ui-radiobutton","mvc/ui/ui-button-menu","mvc/ui/ui-modal"],function(l,b,e,m,q,n){var
d=Backbone.View.extend({optionsDefault:{url:"",cls:""},initialize:function(r){this.options=l.merge(r,this.optionsDefault);this.setElement(this._template(this.options))},_template:function(r){return'<img
class="ui-image '+r.cls+'"
src="'+r.url+'"/>'}});var
k=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(r){this.options=l.merge(r,this.optionsDefault);this.setElement(this._template(this.options))},title:function(r){this.$el.html(r)},_template:function(r){return'<label
class="ui-label
'+r.cls+'">'+r.title+"</label>"},value:function(){return
options.title}});var
c=Backbone.View.extend({optionsDefault:{floating:"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""},initialize:function(r){this.options=l.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).tooltip({title:r.tooltip,placement:"bottom"})},_template:function(r){return'<div><span
class="fa '+r.icon+'"
class="ui-icon"/> '+r.title+"</div>"}});var
g=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"btn
btn-default",icon:""},initialize:function(r){this.options=l.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",r.onclick);$(this.el).tooltip({title:r.tooltip,placement:"bottom"})},_template:function(r){var
s='<button id="'+r.id+'" type="submit"
style="float: '+r.floating+';" type="button"
class="ui-button '+r.cls+'">';if(r.icon){s+='<i
class="icon fa
'+r.icon+'"></i> '}s+=r.title+"</button>";return
s}});var
h=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"icon-btn",icon:"",tooltip:"",onclick:null},initialize:function(r){this.options=l.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",r.onclick);$(this.el).tooltip({title:r.tooltip,placement:"bottom"})},_template:function(r){var
s="";if(r.title){s="width: auto;"}var t='<div
id="'+r.id+'" style="float: '+r.floating+";
"+s+'" class="ui-button-icon
'+r.cls+'">';if(r.title){t+='<div
class="button"><i class="icon fa
'+r.icon+'"/> <span
class="title">'+r.title+"</span></div>"}else{t+='<i
class="icon fa '+r.icon+'"/>'}t+="</div>";return
t}});var
f=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(r){this.options=l.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",r.onclick)},_template:function(r){return'<div><a
href="javascript:void(0)" class="ui-anchor
'+r.cls+'">'+r.title+"</a></div>"}});var
o=Backbone.View.extend({optionsDefault:{message:"",status:"info",persistent:false},initialize:function(r){this.options=l.merge(r,this.optionsDefault);this.setElement("<div></div>")},update:function(s){this.options=l.merge(s,this.optionsDefault);if(s.message!=""){this.$el.html(this._template(this.options));this.$el.find(".alert").append(s.message);this.$el.fadeIn();if(!s.persistent){var
r=this;window.setTimeout(function(){if(r.$el.is(":visible")){r.$el.fadeOut()}else{r.$el.hide()}},3000)}}else{this.$el.fadeOut()}},_template:function(r){return'<div
class="ui-message alert alert-'+r.status+'"/>'}});var
a=Backbone.View.extend({optionsDefault:{onclick:null,searchword:""},initialize:function(s){this.options=l.merge(s,this.optionsDefault);this.setElement(this._template(this.options));var
r=this;if(this.options.onclick){this.$el.on("submit",function(u){var
t=r.$el.find("#search");r.options.onclick(t.val())})}},_template:function(r){return'<div
class="ui-search"><form onsubmit="return false;"><input
id="search" class="form-control input-sm" type="text"
name="search" placeholder="Search..."
value="'+r.searchword+'"><button type="submit"
class="btn search-btn"><i class="fa
fa-search"></i></button></form></div>'}});var
j=Backbone.View.extend({optionsDefault:{value:"",type:"text",placeholder:"",disabled:false,visible:true,cls:""},initialize:function(s){this.options=l.merge(s,this.optionsDefault);this.setElement(this._template(this.options));if(this.options.disabled){this.$el.prop("disabled",true)}if(!this.options.visible){this.$el.hide()}var
r=this;this.$el.on("input",function(){if(r.options.onchange){r.options.onchange(r.$el.val())}})},value:function(r){if(r!==undefined){this.$el.val(r)}return
this.$el.val()},_template:function(r){return'<input id="'+r.id+'"
type="'+r.type+'" value="'+r.value+'"
placeholder="'+r.placeholder+'" class="ui-input
'+r.cls+'">'}});var
i=Backbone.View.extend({optionsDefault:{value:"",type:"text",placeholder:"",disabled:false,visible:true,cls:""},initialize:function(s){this.options=l.merge(s,this.optionsDefault);this.setElement(this._template(this.options));if(this.options.disabled){this.$el.prop("disabled",true)}if(!this.options.visible){this.$el.hide()}var
r=this;this.$el.on("input",function(){if(r.options.onchange){r.options.onchange(r.$el.val())}})},value:function(r){if(r!==undefined){this.$el.val(r)}return
this.$el.val()},_template:function(r){return'<textarea
id="'+r.id+'" class="ui-textarea '+r.cls+'"
rows="5"></textarea>'}});var
p=Backbone.View.extend({optionsDefault:{value:""},initialize:function(r){this.options=l.merge(r,this.optionsDefault);this.setElement(this._template(this.options))},value:function(r){if(r!==undefined){this.$el.val(r)}return
this.$el.val()},_template:function(r){return'<hidden
id="'+r.id+'"
value="'+r.value+'"/>'}});return{Anchor:f,Button:g,ButtonIcon:h,ButtonMenu:q,Icon:c,Image:d,Input:j,Label:k,Message:o,Modal:n,RadioButton:m,Checkbox:e,Searchbox:a,Select:b,Textarea:i,Hidden:p}});
\ No newline at end of file
diff -r c4e19939b6a300c555a9fdab10b7372d8a8a73a1 -r
11e6f06278126edb16c6333e2eddf6dd1a9772b2 static/scripts/packed/mvc/ui/ui-table.js
--- a/static/scripts/packed/mvc/ui/ui-table.js
+++ b/static/scripts/packed/mvc/ui/ui-table.js
@@ -1,1 +1,1 @@
-define(["utils/utils"],function(a){var
b=Backbone.View.extend({row:null,row_count:0,optionsDefault:{content:"No content
available.",onchange:null,ondblclick:null,onconfirm:null,cls:"ui-table"},events:{click:"_onclick",dblclick:"_ondblclick"},initialize:function(c){this.options=a.merge(c,this.optionsDefault);var
d=$(this._template(this.options));this.$thead=d.find("thead");this.$tbody=d.find("tbody");this.$tmessage=d.find("tmessage");this.setElement(d);this.row=$("<tr></tr>")},addHeader:function(c){var
d=$("<th></th>");d.append(c);this.row.append(d)},appendHeader:function(){this.$thead.append(this.row);this.row=$("<tr></tr>")},add:function(c,d,f){var
e=$("<td></td>");if(d){e.css("width",d)}if(f){e.css("text-align",f)}e.append(c);this.row.append(e)},append:function(c){this._commit(c)},prepend:function(c){this._commit(c,true)},get:function(c){return
this.$el.find("#"+c)},del:function(d){var
c=this.$tbody.find("#"+d);if(c.length>0){c.remove();this.row_count--;this._refresh()}},delAll:function(){this.$tbody.empty();this.row_count=0;this._refresh()},value:function(c){this.before=this.$tbody.find(".current").attr("id");if(c!==undefined){this.$tbody.find("tr").removeClass("current");if(c){this.$tbody.find("#"+c).addClass("current")}}var
d=this.$tbody.find(".current").attr("id");if(d===undefined){return
null}else{if(d!=this.before&&this.options.onchange){this.options.onchange(c)}return
d}},size:function(){return
this.$tbody.find("tr").length},_commit:function(d,c){this.del(d);this.row.attr("id",d);if(c){this.$tbody.prepend(this.row)}else{this.$tbody.append(this.row)}this.row=$("<tr></tr>");this.row_count++;this._refresh()},_onclick:function(f){var
c=this.value();var
d=$(f.target).closest("tr").attr("id");if(d!=""){if(d&&c!=d){if(this.options.onconfirm){this.options.onconfirm(d)}else{this.value(d)}}}},_ondblclick:function(d){var
c=this.value();if(c&&this.options.ondblclick){this.options.ondblclick(c)}},_refresh:function(){if(this.row_count==0){this.$tmessage.show()}else{this.$tmessage.hide()}},_template:function(c){return'<div><table
class="'+c.cls+'"><thead></thead><tbody></tbody></table><tmessage>'+c.content+"</tmessage><div>"}});return{View:b}});
\ No newline at end of file
+define(["utils/utils"],function(a){var
b=Backbone.View.extend({row:null,row_count:0,optionsDefault:{content:"No content
available.",onchange:null,ondblclick:null,onconfirm:null,cls:"ui-table",cls_tr:""},events:{click:"_onclick",dblclick:"_ondblclick"},initialize:function(c){this.options=a.merge(c,this.optionsDefault);var
d=$(this._template(this.options));this.$thead=d.find("thead");this.$tbody=d.find("tbody");this.$tmessage=d.find("tmessage");this.setElement(d);this.row=this._row()},addHeader:function(c){var
d=$("<th></th>");d.append(c);this.row.append(d)},appendHeader:function(){this.$thead.append(this.row);this.row=$("<tr></tr>")},add:function(c,d,f){var
e=$("<td></td>");if(d){e.css("width",d)}if(f){e.css("text-align",f)}e.append(c);this.row.append(e)},append:function(c){this._commit(c)},prepend:function(c){this._commit(c,true)},get:function(c){return
this.$el.find("#"+c)},del:function(d){var
c=this.$tbody.find("#"+d);if(c.length>0){c.remove();this.row_count--;this._refresh()}},delAll:function(){this.$tbody.empty();this.row_count=0;this._refresh()},value:function(c){this.before=this.$tbody.find(".current").attr("id");if(c!==undefined){this.$tbody.find("tr").removeClass("current");if(c){this.$tbody.find("#"+c).addClass("current")}}var
d=this.$tbody.find(".current").attr("id");if(d===undefined){return
null}else{if(d!=this.before&&this.options.onchange){this.options.onchange(c)}return
d}},size:function(){return
this.$tbody.find("tr").length},_commit:function(d,c){this.del(d);this.row.attr("id",d);if(c){this.$tbody.prepend(this.row)}else{this.$tbody.append(this.row)}this.row=this._row();this.row_count++;this._refresh()},_row:function(){return
$('<tr
class="'+this.options.cls_tr+'"></tr>')},_onclick:function(f){var
c=this.value();var
d=$(f.target).closest("tr").attr("id");if(d!=""){if(d&&c!=d){if(this.options.onconfirm){this.options.onconfirm(d)}else{this.value(d)}}}},_ondblclick:function(d){var
c=this.value();if(c&&this.options.ondblclick){this.options.ondblclick(c)}},_refresh:function(){if(this.row_count==0){this.$tmessage.show()}else{this.$tmessage.hide()}},_template:function(c){return'<div><table
class="'+c.cls+'"><thead></thead><tbody></tbody></table><tmessage>'+c.content+"</tmessage><div>"}});return{View:b}});
\ No newline at end of file
diff -r c4e19939b6a300c555a9fdab10b7372d8a8a73a1 -r
11e6f06278126edb16c6333e2eddf6dd1a9772b2 static/scripts/packed/mvc/ui/ui-tabs.js
--- a/static/scripts/packed/mvc/ui/ui-tabs.js
+++ b/static/scripts/packed/mvc/ui/ui-tabs.js
@@ -1,1 +1,1 @@
-define(["utils/utils"],function(a){var
b=Backbone.View.extend({optionsDefault:{title_new:"",operations:null,onnew:null},initialize:function(e){this.visible=false;this.$nav=null;this.$content=null;this.first_tab=null;this.options=a.merge(e,this.optionsDefault);var
c=$(this._template(this.options));this.$nav=c.find(".tab-navigation");this.$content=c.find(".tab-content");this.setElement(c);this.list={};var
d=this;if(this.options.operations){$.each(this.options.operations,function(g,h){h.$el.prop("id",g);d.$nav.find(".operations").append(h.$el)})}if(this.options.onnew){var
f=$(this._template_tab_new(this.options));this.$nav.append(f);f.tooltip({title:"Add a
new
tab",placement:"bottom",container:d.$el});f.on("click",function(g){f.tooltip("hide");d.options.onnew()})}},size:function(){return
_.size(this.list)},add:function(f){var e=this;var h=f.id;var
g=$(this._template_tab(f));var
d=$(this._template_tab_content(f));this.list[h]=f.ondel?true:false;if(this.options.onnew){this.$nav.find("#new-tab").before(g)}else{this.$nav.append(g)}d.append(f.$el);this.$content.append(d);if(_.size(this.list)==1){g.addClass("active");d.addClass("active");this.first_tab=h}if(f.ondel){var
c=g.find("#delete");c.tooltip({title:"Delete this
tab",placement:"bottom",container:e.$el});c.on("click",function(){c.tooltip("destroy");e.$el.find(".tooltip").remove();f.ondel();return
false})}g.on("click",function(i){i.preventDefault();if(f.onclick){f.onclick()}else{e.show(h)}})},del:function(c){this.$el.find("#tab-"+c).remove();this.$el.find("#tab-content-"+c).remove();if(this.first_tab==c){this.first_tab=null}if(this.first_tab!=null){this.show(this.first_tab)}},delRemovable:function(){for(var
c in
this.list){if(this.list[c]){this.del(c)}}},show:function(c){this.$el.fadeIn("fast");this.visible=true;if(c){this.$el.find(".tab-element").removeClass("active");this.$el.find(".tab-pane").removeClass("active");this.$el.find("#tab-"+c).addClass("active");this.$el.find("#tab-content-"+c).addClass("active")}},hide:function(){this.$el.fadeOut("fast");this.visible=false},hideOperation:function(c){this.$nav.find("#"+c).hide()},showOperation:function(c){this.$nav.find("#"+c).show()},setOperation:function(e,d){var
c=this.$nav.find("#"+e);c.off("click");c.on("click",d)},title:function(e,d){var
c=this.$el.find("#tab-title-text-"+e);if(d){c.html(d)}return
c.html()},_template:function(c){return'<div class="ui-tabs tabbable
tabs-left"><ul id="tab-navigation" class="tab-navigation nav
nav-tabs"><div class="operations" style="float: right;
margin-bottom: 4px;"></div></ul><div id="tab-content"
class="tab-content"/></div>'},_template_tab_new:function(c){return'<li
id="new-tab"><a href="javascript:void(0);"><i
class="ui-tabs-add fa
fa-plus-circle"/>'+c.title_new+"</a></li>"},_template_tab:function(d){var
c='<li id="tab-'+d.id+'" class="tab-element"><a
id="tab-title-link-'+d.id+'" title=""
href="#tab-content-'+d.id+'"
data-original-title=""><span
id="tab-title-text-'+d.id+'">'+d.title+"</span>";if(d.ondel){c+='<i
id="delete" class="ui-tabs-delete fa
fa-minus-circle"/>'}c+="</a></li>";return
c},_template_tab_content:function(c){return'<div
id="tab-content-'+c.id+'"
class="tab-pane"/>'}});return{View:b}});
\ No newline at end of file
+define(["utils/utils"],function(a){var
b=Backbone.View.extend({optionsDefault:{title_new:"",operations:null,onnew:null,min:null,max:null},initialize:function(e){this.visible=false;this.$nav=null;this.$content=null;this.first_tab=null;this.options=a.merge(e,this.optionsDefault);var
c=$(this._template(this.options));this.$nav=c.find(".tab-navigation");this.$content=c.find(".tab-content");this.setElement(c);this.list={};var
d=this;if(this.options.operations){$.each(this.options.operations,function(g,h){h.$el.prop("id",g);d.$nav.find(".operations").append(h.$el)})}if(this.options.onnew){var
f=$(this._template_tab_new(this.options));this.$nav.append(f);f.tooltip({title:"Add a
new
tab",placement:"bottom",container:d.$el});f.on("click",function(g){f.tooltip("hide");d.options.onnew()})}},size:function(){return
_.size(this.list)},add:function(f){var e=this;var h=f.id;var
g=$(this._template_tab(f));var
d=$(this._template_tab_content(f));this.list[h]=f.ondel?true:false;if(this.options.onnew){this.$nav.find("#new-tab").before(g)}else{this.$nav.append(g)}d.append(f.$el);this.$content.append(d);if(this.size()==1){g.addClass("active");d.addClass("active");this.first_tab=h}if(this.options.max&&this.size()>=this.options.max){this.$el.find("#new-tab").hide()}if(f.ondel){var
c=g.find("#delete");c.tooltip({title:"Delete this
tab",placement:"bottom",container:e.$el});c.on("click",function(){c.tooltip("destroy");e.$el.find(".tooltip").remove();f.ondel();return
false})}g.on("click",function(i){i.preventDefault();if(f.onclick){f.onclick()}else{e.show(h)}})},del:function(c){this.$el.find("#tab-"+c).remove();this.$el.find("#"+c).remove();if(this.first_tab==c){this.first_tab=null}if(this.first_tab!=null){this.show(this.first_tab)}if(this.list[c]){delete
this.list[c]}if(this.size()<this.options.max){this.$el.find("#new-tab").show()}},delRemovable:function(){for(var
c in
this.list){this.del(c)}},show:function(c){this.$el.fadeIn("fast");this.visible=true;if(c){this.$el.find(".tab-element").removeClass("active");this.$el.find(".tab-pane").removeClass("active");this.$el.find("#tab-"+c).addClass("active");this.$el.find("#"+c).addClass("active")}},hide:function(){this.$el.fadeOut("fast");this.visible=false},hideOperation:function(c){this.$nav.find("#"+c).hide()},showOperation:function(c){this.$nav.find("#"+c).show()},setOperation:function(e,d){var
c=this.$nav.find("#"+e);c.off("click");c.on("click",d)},title:function(e,d){var
c=this.$el.find("#tab-title-text-"+e);if(d){c.html(d)}return
c.html()},retitle:function(d){var c=0;for(var e in this.list){this.title(e,++c+":
"+d)}},_template:function(c){return'<div class="ui-tabs tabbable
tabs-left"><ul id="tab-navigation" class="tab-navigation nav
nav-tabs"><div class="operations" style="float: right;
margin-bottom: 4px;"></div></ul><div id="tab-content"
class="tab-content"/></div>'},_template_tab_new:function(c){return'<li
id="new-tab"><a href="javascript:void(0);"><i
class="ui-tabs-add fa
fa-plus-circle"/>'+c.title_new+"</a></li>"},_template_tab:function(d){var
c='<li id="tab-'+d.id+'" class="tab-element"><a
id="tab-title-link-'+d.id+'" title=""
href="#'+d.id+'" data-original-title=""><span
id="tab-title-text-'+d.id+'"
class="tab-title-text">'+d.title+"</span>";if(d.ondel){c+='<i
id="delete" class="ui-tabs-delete fa
fa-minus-circle"/>'}c+="</a></li>";return
c},_template_tab_content:function(c){return'<div id="'+c.id+'"
class="tab-pane"/>'}});return{View:b}});
\ No newline at end of file
diff -r c4e19939b6a300c555a9fdab10b7372d8a8a73a1 -r
11e6f06278126edb16c6333e2eddf6dd1a9772b2 static/style/blue/base.css
--- a/static/style/blue/base.css
+++ b/static/style/blue/base.css
@@ -1870,6 +1870,8 @@
.collection-creator .flexible-partition .column-header
.remove-extensions-link{display:none}
.collection-creator .paired-columns{height:0;border:1px solid lightgrey;border-width:1px
0 1px 0;margin-bottom:8px}.collection-creator .paired-columns
.column-datasets{width:100%;overflow:auto}
.collection-creator .paired-columns
.unpair-btn{float:right;margin-top:-32px;width:31px;height:32px;border-color:transparent;background:transparent;font-size:120%}.collection-creator
.paired-columns .unpair-btn:hover{border-color:#BFBFBF;background:#DEDEDE}
+.collection-creator .paired-columns
.paired-drop-placeholder{width:60px;height:3px;margin:2px 0px 0px
14px;background:black}.collection-creator .paired-columns
.paired-drop-placeholder:before{float:left;font-size:120%;margin:-9px 0 0
-8px;font-family:FontAwesome;content:'\f0da'}
+.collection-creator .paired-columns
.paired-drop-placeholder:last-child{margin-bottom:8px}
.collection-creator .paired-columns .empty-message{text-align:center}
.collection-creator .footer{padding-bottom:8px}.collection-creator .footer .attributes
.remove-extensions-prompt{line-height:32px}.collection-creator .footer .attributes
.remove-extensions-prompt .remove-extensions{display:inline-block;width:24px;height:24px}
.collection-creator .footer .attributes .collection-name-prompt{margin:5px 4px 0 0}
diff -r c4e19939b6a300c555a9fdab10b7372d8a8a73a1 -r
11e6f06278126edb16c6333e2eddf6dd1a9772b2
static/style/src/less/ui/paired-collection-creator.less
--- a/static/style/src/less/ui/paired-collection-creator.less
+++ b/static/style/src/less/ui/paired-collection-creator.less
@@ -374,6 +374,22 @@
background: #DEDEDE;
}
}
+ .paired-drop-placeholder {
+ width : 60px;
+ height : 3px;
+ margin : 2px 0px 0px 14px;
+ background : black;
+ &:before {
+ float: left;
+ font-size: 120%;
+ margin: -9px 0px 0px -8px;
+ font-family: FontAwesome;
+ content: '\f0da';
+ }
+ &:last-child {
+ margin-bottom: 8px;
+ }
+ }
.empty-message {
text-align: center;
}
diff -r c4e19939b6a300c555a9fdab10b7372d8a8a73a1 -r
11e6f06278126edb16c6333e2eddf6dd1a9772b2 templates/base/base_panels.mako
--- a/templates/base/base_panels.mako
+++ b/templates/base/base_panels.mako
@@ -106,7 +106,6 @@
## Scripts can be loaded later since they progressively add features to
## the panels, but do not change layout
${h.js(
- 'libs/jquery/jquery.event.drag',
'libs/jquery/jquery.event.hover',
'libs/jquery/jquery.form',
'libs/jquery/jquery.rating',
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
--
This is a commit notification from bitbucket.org. You are receiving
this because you have the service enabled, addressing the recipient of
this email.
3085
days inactive
3085
days old
galaxy-commits@lists.galaxyproject.org
0 comments
1 participants
participants (1)
-
commits-noreply＠bitbucket.org