Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: f5b29b82d29548a05da911b03d1b3e0dce5dc6e7 https://github.com/galaxyproject/galaxy/commit/f5b29b82d29548a05da911b03d1b3... Author: mvdbeek m.vandenbeek@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M client/galaxy/scripts/mvc/tag.js A client/galaxy/scripts/mvc/workflow/workflow-model.js M client/galaxy/scripts/mvc/workflow/workflow.js

Log Message: ----------- WIP - show/add/remove workflow tags

Commit: 5e667a7d54eba623bbf6cb42865507e063bdb4a5 https://github.com/galaxyproject/galaxy/commit/5e667a7d54eba623bbf6cb4286550... Author: mvdbeek m.vandenbeek@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M client/galaxy/scripts/mvc/tag.js M client/galaxy/scripts/mvc/workflow/workflow-model.js M client/galaxy/scripts/mvc/workflow/workflow.js

Log Message: ----------- Allow editing tags in workflow overview page

Commit: b57b2de7dac8c2fb36e4f3a626d6d33c57da6064 https://github.com/galaxyproject/galaxy/commit/b57b2de7dac8c2fb36e4f3a626d6d... Author: mvdbeek m.vandenbeek@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M lib/galaxy/managers/workflows.py M lib/galaxy/webapps/galaxy/api/workflows.py

Log Message: ----------- Allow exporting and importing workflow tags

Commit: e1b5a459dcfd183327d8ea1d3485fb5f509b6d82 https://github.com/galaxyproject/galaxy/commit/e1b5a459dcfd183327d8ea1d3485f... Author: mvdbeek m.vandenbeek@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py

Log Message: ----------- Allow updating workflows from partial information

The workflow overview page gets workflow information from the /api/workflows, which returns a reduced amount of information, most notably the steps are not being returned. This commit skips updating the actual workflow steps if the steps are not included in the workflow payload. We can now update name, tags and whether a workflow should be shown in the tool panel. We also return owner and number of steps in the response to importing workflows.

Commit: e2d1fabf58f813c2d722849ad9bf5d1d46517665 https://github.com/galaxyproject/galaxy/commit/e2d1fabf58f813c2d722849ad9bf5... Author: mvdbeek m.vandenbeek@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-model.js

Log Message: ----------- Remove unncessary boilerplate from workflow model

Commit: 17be825cdf3714d2f335ba20ad2b6f51ad10c622 https://github.com/galaxyproject/galaxy/commit/17be825cdf3714d2f335ba20ad2b6... Author: mvdbeek m.vandenbeek@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js

Log Message: ----------- Allow renaming, downloading, dropping workflow files to import

Commit: 5dfe36deceb6d4e38a82c0130a011956c29c06df https://github.com/galaxyproject/galaxy/commit/5dfe36deceb6d4e38a82c0130a011... Author: mvdbeek m.vandenbeek@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M lib/galaxy/managers/workflows.py

Log Message: ----------- Only access tags if workflow exists

Commit: 060952fa88dd84af04bc1e879e67726596cbc7ff https://github.com/galaxyproject/galaxy/commit/060952fa88dd84af04bc1e879e677... Author: mvdbeek m.vandenbeek@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M lib/galaxy/webapps/galaxy/api/workflows.py

Log Message: ----------- Allow downloading .ga workflows via the UI

Commit: 1a4effa70e9ad8088e19ae334753b7a898d286aa https://github.com/galaxyproject/galaxy/commit/1a4effa70e9ad8088e19ae334753b... Author: mvdbeek m.vandenbeek@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M lib/galaxy/webapps/galaxy/controllers/workflow.py

Log Message: ----------- Remove downloading workflows through controller

Commit: 1015b510f81723b927866546390d179abef796f9 https://github.com/galaxyproject/galaxy/commit/1015b510f81723b927866546390d1... Author: mvdbeek m.vandenbeek@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M lib/galaxy/workflow/modules.py

Log Message: ----------- Properly raise Exception if tool not found

Commit: 70c889435892ebfd1fb88edaab187cb84ba1dccf https://github.com/galaxyproject/galaxy/commit/70c889435892ebfd1fb88edaab187... Author: mvdbeek m.vandenbeek@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-model.js M client/galaxy/scripts/mvc/workflow/workflow.js

Log Message: ----------- Copy workflows without reloading page

Commit: 1dcfe56bb9f1c81567efe68f5ebe4c2f4c6bfb7f https://github.com/galaxyproject/galaxy/commit/1dcfe56bb9f1c81567efe68f5ebe4... Author: mvdbeek m.vandenbeek@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M client/galaxy/scripts/mvc/tag.js M client/galaxy/scripts/mvc/workflow/workflow.js

Log Message: ----------- Merge WorkflowTagsEditor with TagsEditor

Commit: f1f412ff298a3d859da1f4fe8b7640d722827a1f https://github.com/galaxyproject/galaxy/commit/f1f412ff298a3d859da1f4fe8b764... Author: mvdbeek m.vandenbeek@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js

Log Message: ----------- Make tag_editor local variable

Commit: 911c969631a1dcfb7eee2f2499f81d662b617800 https://github.com/galaxyproject/galaxy/commit/911c969631a1dcfb7eee2f2499f81... Author: mvdbeek m.vandenbeek@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js

Log Message: ----------- Fix logic for determining whether username should be mentioned

Commit: e54b1d1c379f56f2b45ef129a9863be77c379ae7 https://github.com/galaxyproject/galaxy/commit/e54b1d1c379f56f2b45ef129a9863... Author: mvdbeek m.vandenbeek@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js

Log Message: ----------- Fix adjusting dropdown menu

Commit: 0aa4e5463d410df448f484c13174b0e8d6ba87f8 https://github.com/galaxyproject/galaxy/commit/0aa4e5463d410df448f484c13174b... Author: mvdbeek m.vandenbeek@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js

Log Message: ----------- Use toastr for informing user about success/failure

Commit: 61ac1d77a4679938c98e43f54bea9e52073ae32e https://github.com/galaxyproject/galaxy/commit/61ac1d77a4679938c98e43f54bea9... Author: mvdbeek m.vandenbeek@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less

Log Message: ----------- Highlight workflow dropzone

Commit: 09f66a6394303a70b279a34c8f63458b059febc5 https://github.com/galaxyproject/galaxy/commit/09f66a6394303a70b279a34c8f634... Author: mvdbeek m.vandenbeek@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js

Log Message: ----------- Remove unused $el_wf_link variable

Commit: 1de485d3f70165ca1860fbc388a30f40d1a21888 https://github.com/galaxyproject/galaxy/commit/1de485d3f70165ca1860fbc388a30... Author: mvdbeek m.vandenbeek@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js

Log Message: ----------- camelCase functions and variables

Commit: bbaf59a05a7ff6bb048f93fe1eb192157301d6db https://github.com/galaxyproject/galaxy/commit/bbaf59a05a7ff6bb048f93fe1eb19... Author: mvdbeek m.vandenbeek@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js

Log Message: ----------- Display errors to user

Commit: 2968e0e588e35da24caecd0cc4223f694332673b https://github.com/galaxyproject/galaxy/commit/2968e0e588e35da24caecd0cc4223... Author: mvdbeek m.vandenbeek@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js

Log Message: ----------- Show toast at the top-right (which is the default setting)

Commit: 268a895d2b787d9c77a5b87d04ec772382615a8b https://github.com/galaxyproject/galaxy/commit/268a895d2b787d9c77a5b87d04ec7... Author: mvdbeek m.vandenbeek@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-model.js

Log Message: ----------- Describe workflow model and collection (thx @martenson)

Commit: aa49c0053a278d40dcc0affaf894b0e60b3d3949 https://github.com/galaxyproject/galaxy/commit/aa49c0053a278d40dcc0affaf894b... Author: mvdbeek m.vandenbeek@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-model.js M client/galaxy/scripts/mvc/workflow/workflow.js

Log Message: ----------- Move fetching out of WorkflowCollection

thx for the hint @martenson.

Commit: 9a331363cb51733b446aa44eca71f3439152d4ab https://github.com/galaxyproject/galaxy/commit/9a331363cb51733b446aa44eca71f... Author: mvdbeek m.vandenbeek@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js

Log Message: ----------- Improve error reporting to user

Commit: ede8c200f944a9cc21d894654fb6ec0027747333 https://github.com/galaxyproject/galaxy/commit/ede8c200f944a9cc21d894654fb6e... Author: mvdbeek m.vandenbeek@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M static/maps/mvc/tag.js.map A static/maps/mvc/workflow/workflow-model.js.map M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/admin.bundled.js M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/tag.js A static/scripts/mvc/workflow/workflow-model.js M static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css

Log Message: ----------- Add static JS

Commit: d0df3886fa7acaa3d5f63360e2af78aab2deaaaa https://github.com/galaxyproject/galaxy/commit/d0df3886fa7acaa3d5f63360e2af7... Author: John Chilton jmchilton@gmail.com Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/framework.py M test/selenium_tests/test_workflow_management.py

Log Message: ----------- More workflow index page Selenium tests.

- Fix rename test for recent change to using alert. - Test basic adding a tag. - Outline of a test for downloading workflows. - Add test for publishing display on index. - Add test for using the search box on the workflow index page.

Commit: 47efd8089c5b1dfc67af7cf3887ce5b8b907e057 https://github.com/galaxyproject/galaxy/commit/47efd8089c5b1dfc67af7cf3887ce... Author: Martin Cech marten@bx.psu.edu Date: 2017-09-01 (Fri, 01 Sep 2017)

Changed paths: M client/galaxy/scripts/mvc/tag.js A client/galaxy/scripts/mvc/workflow/workflow-model.js M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M lib/galaxy/managers/workflows.py M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/controllers/workflow.py M lib/galaxy/workflow/modules.py M static/maps/mvc/tag.js.map A static/maps/mvc/workflow/workflow-model.js.map M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/admin.bundled.js M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/tag.js A static/scripts/mvc/workflow/workflow-model.js M static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/framework.py M test/selenium_tests/test_workflow_management.py

Log Message: ----------- Merge pull request #4476 from mvdbeek/workflow_view_tags

Show tags, import by drag-and-drop and avoid refreshed in workflow page

Compare: https://github.com/galaxyproject/galaxy/compare/558e22a49cbd...47efd8089c5b