2 new commits in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/3615504d0a43/ Changeset: 3615504d0a43 Branch: next-stable User: jgoecks Date: 2013-08-07 00:06:45 Summary: Update citation for Tophat2. Affected #: 1 file diff -r 9e8c70746ddb12df2c355e09db023dcbea0397b3 -r 3615504d0a43b511c44a4aa6a8fa520260373694 tools/ngs_rna/tophat2_wrapper.xml --- a/tools/ngs_rna/tophat2_wrapper.xml +++ b/tools/ngs_rna/tophat2_wrapper.xml @@ -450,7 +450,8 @@ <help> **Tophat Overview** -TopHat_ is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. Please cite: Trapnell, C., Pachter, L. and Salzberg, S.L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111 (2009). +TopHat_ is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie(2), and then analyzes the mapping results to identify splice junctions between exons. Please cite: Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, and Salzberg SL. TopHat2: accurate alignment +of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol 14:R36, 2013. .. _Tophat: http://tophat.cbcb.umd.edu/ https://bitbucket.org/galaxy/galaxy-central/commits/773941fd26a4/ Changeset: 773941fd26a4 User: jgoecks Date: 2013-08-07 00:07:15 Summary: Automated merge of next-stable branch Affected #: 1 file diff -r 48220b09b62c17422bf81e1b623b90db41b12c72 -r 773941fd26a43c8522c3ff9977cfda5968f65505 tools/ngs_rna/tophat2_wrapper.xml --- a/tools/ngs_rna/tophat2_wrapper.xml +++ b/tools/ngs_rna/tophat2_wrapper.xml @@ -452,7 +452,8 @@ <help> **Tophat Overview** -TopHat_ is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. Please cite: Trapnell, C., Pachter, L. and Salzberg, S.L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111 (2009). +TopHat_ is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie(2), and then analyzes the mapping results to identify splice junctions between exons. Please cite: Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, and Salzberg SL. TopHat2: accurate alignment +of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol 14:R36, 2013. .. _Tophat: http://tophat.cbcb.umd.edu/ Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.