1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/377dd3efe3be/ changeset: 377dd3efe3be user: dan date: 2012-03-28 00:09:55 summary: Add FreeBayes to tool_conf.xml.main. affected #: 3 files diff -r 0282e24997db8e5b5a41a82b6e1904650af42934 -r 377dd3efe3beb7f8d8ef06306fcadac0aafd6365 tool_conf.xml.main --- a/tool_conf.xml.main +++ b/tool_conf.xml.main @@ -208,6 +208,7 @@ <tool file="phenotype_association/lps.xml" /><tool file="phenotype_association/hilbertvis.xml" /><tool file="phenotype_association/freebayes.xml" /> + <tool file="variant_detection/freebayes.xml" /><tool file="phenotype_association/master2pg.xml" /><tool file="phenotype_association/vcf2pgSnp.xml" /><tool file="phenotype_association/dividePgSnpAlleles.xml" /> @@ -326,6 +327,9 @@ <tool file="indels/indel_sam2interval.xml" /><tool file="indels/indel_analysis.xml" /></section> + <section name="NGS: Variant Detection" id="variant_detection"> + <tool file="variant_detection/freebayes.xml" /> + </section><section name="NGS: Peak Calling" id="peak_calling"><tool file="peak_calling/macs_wrapper.xml" /><tool file="peak_calling/sicer_wrapper.xml" /> diff -r 0282e24997db8e5b5a41a82b6e1904650af42934 -r 377dd3efe3beb7f8d8ef06306fcadac0aafd6365 tool_conf.xml.sample --- a/tool_conf.xml.sample +++ b/tool_conf.xml.sample @@ -477,6 +477,7 @@ <tool file="phenotype_association/lps.xml" /><tool file="phenotype_association/hilbertvis.xml" /><tool file="phenotype_association/freebayes.xml" /> + <tool file="variant_detection/freebayes.xml" /><tool file="phenotype_association/master2pg.xml" /><tool file="phenotype_association/vcf2pgSnp.xml" /><tool file="phenotype_association/dividePgSnpAlleles.xml" /> diff -r 0282e24997db8e5b5a41a82b6e1904650af42934 -r 377dd3efe3beb7f8d8ef06306fcadac0aafd6365 tools/phenotype_association/freebayes.xml --- a/tools/phenotype_association/freebayes.xml +++ b/tools/phenotype_association/freebayes.xml @@ -1,5 +1,5 @@ <?xml version="1.0"?> -<tool id="freebayes_wrapper" name="Call SNPS with Freebayes" version="0.5.0"> +<tool id="freebayes_wrapper" name="Call SNPS with Freebayes" version="0.5.0" hidden="True"><requirements><requirement type="package">freebayes</requirement></requirements> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.