Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 38ec399d56f07e40c64f37342b099fab65c746d7 https://github.com/galaxyproject/galaxy/commit/38ec399d56f07e40c64f37342b099... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2017-11-06 (Mon, 06 Nov 2017) Changed paths: M client/galaxy/scripts/mvc/toolshed/repository-view.js Log Message: ----------- Fix revision selection during installation Without this the model would be refetched and would remain at the initial changeset revision. Commit: 7bbd2dbd758cf685978dee4deb50d047b648b9fe https://github.com/galaxyproject/galaxy/commit/7bbd2dbd758cf685978dee4deb50d... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2017-11-06 (Mon, 06 Nov 2017) Changed paths: M client/galaxy/scripts/mvc/toolshed/repository-view.js Log Message: ----------- Order the metadata revisions Commit: 41e2558ed5d228cd4b5b3c45b59d80ff7dcb7f8b https://github.com/galaxyproject/galaxy/commit/41e2558ed5d228cd4b5b3c45b59d8... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2017-11-06 (Mon, 06 Nov 2017) Changed paths: M client/galaxy/scripts/mvc/toolshed/repository-view.js Log Message: ----------- Fix undefined variable error in repository installation queue Commit: fd16b3d3b46dde3d11ab357704755915149cb8d8 https://github.com/galaxyproject/galaxy/commit/fd16b3d3b46dde3d11ab357704755... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2017-11-06 (Mon, 06 Nov 2017) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py Log Message: ----------- Fix key error for non-tool workflow steps (i.e collection input) Commit: 39912e8c5beba8daa82078aa3a9626cedded5277 https://github.com/galaxyproject/galaxy/commit/39912e8c5beba8daa82078aa3a962... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2017-11-06 (Mon, 06 Nov 2017) Changed paths: M static/maps/mvc/toolshed/repository-view.js.map M static/scripts/mvc/toolshed/repository-view.js Log Message: ----------- Add static JS Commit: d95ad427618ae6dae88c58e5eaed29aa7e16393b https://github.com/galaxyproject/galaxy/commit/d95ad427618ae6dae88c58e5eaed2... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2017-11-11 (Sat, 11 Nov 2017) Changed paths: M lib/galaxy/webapps/galaxy/api/toolshed.py Log Message: ----------- Fix KeyError in beta repository installation Repository metadata may not include tool dependencies. Commit: ec81d16585e43335cd54d4d5c3f415e861db6522 https://github.com/galaxyproject/galaxy/commit/ec81d16585e43335cd54d4d5c3f41... 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M test/unit/jobs/test_runner_local.py M test/unit/managers/base.py M test/unit/managers/test_CollectionManager.py M test/unit/managers/test_DatasetManager.py M test/unit/managers/test_HDAManager.py M test/unit/managers/test_HDCAManager.py M test/unit/managers/test_HistoryContentsManager.py M test/unit/managers/test_HistoryManager.py M test/unit/managers/test_UserManager.py M test/unit/shed_unit/test_installed_repository_manager.py M test/unit/shed_unit/test_tool_panel_manager.py M test/unit/test_objectstore.py M test/unit/tools/test_actions.py M test/unit/tools/test_collect_primary_datasets.py M test/unit/tools/test_column_parameters.py M test/unit/tools/test_conda_resolution.py M test/unit/tools/test_data_parameters.py M test/unit/tools/test_dataset_matcher.py M test/unit/tools/test_evaluation.py M test/unit/tools/test_execution.py M test/unit/tools/test_history_imp_exp.py M test/unit/tools/test_parameter_parsing.py M test/unit/tools/test_parsing.py M test/unit/tools/test_select_parameters.py M test/unit/tools/test_tool_deps.py M test/unit/tools/test_tool_loader.py A test/unit/tools/test_tool_validation.py M test/unit/tools/test_toolbox.py M test/unit/tools/test_watcher.py M test/unit/tools_support.py M test/unit/unittest_utils/galaxy_mock.py M test/unit/visualizations/plugins/test_VisualizationPlugin.py M test/unit/visualizations/plugins/test_VisualizationsRegistry.py M test/unit/web/framework/test_webapp.py M test/unit/workflows/test_modules.py M test/unit/workflows/test_run_parameters.py M test/unit/workflows/test_workflow_progress.py M tools/data_source/data_source.py M tools/data_source/microbial_import.xml M tools/data_source/upload.py M tools/filters/gff/gff_filter_by_attribute.py M tools/filters/gff/gff_filter_by_feature_count.py M tools/phenotype_association/senatag.py M tools/stats/gsummary.py M tox.ini Log Message: ----------- Merge remote-tracking branch 'jmchilton/dev' into beta_tool_install_fixes and repack. Commit: 3a9d63c69005602d32212208c69729bc4813ad5e https://github.com/galaxyproject/galaxy/commit/3a9d63c69005602d32212208c6972... Author: John Chilton <jmchilton@gmail.com> Date: 2017-12-07 (Thu, 07 Dec 2017) Changed paths: M client/galaxy/scripts/mvc/toolshed/repository-view.js M lib/galaxy/webapps/galaxy/api/toolshed.py M lib/galaxy/webapps/galaxy/api/workflows.py M static/scripts/bundled/extended.bundled.js M static/scripts/mvc/toolshed/repository-view.js Log Message: ----------- Merge pull request #4944 from mvdbeek/beta_tool_install_fixes Fix revision selection during (beta) repository installation Compare: https://github.com/galaxyproject/galaxy/compare/c0b1337f26b4...3a9d63c69005