# HG changeset patch -- Bitbucket.org # Project galaxy-dist # URL http://bitbucket.org/galaxy/galaxy-dist/overview # User Nate Coraor nate@bx.psu.edu # Date 1288984386 14400 # Node ID 6d94416b2ccf9205283ec197154d99522615cbf8 # Parent 1e8d7c6ad88b074b33b2029f3baa15c2eb929e70 Automatically find new .sample files in tool-data/.

--- a/run.sh +++ b/run.sh @@ -5,47 +5,22 @@ cd `dirname $0` python ./scripts/check_python.py [ $? -ne 0 ] && exit 1

-FROM_SAMPLE=" - datatypes_conf.xml - reports_wsgi.ini - tool_conf.xml - tool_data_table_conf.xml - universe_wsgi.ini - tool-data/add_scores.loc - tool-data/alignseq.loc - tool-data/annotation_profiler_options.xml - tool-data/annotation_profiler_valid_builds.txt - tool-data/bfast_indexes.loc - tool-data/binned_scores.loc - tool-data/blastdb.loc - tool-data/blastdb_p.loc - tool-data/bowtie_indices.loc - tool-data/bowtie_indices_color.loc - tool-data/codingSnps.loc - tool-data/encode_datasets.loc - tool-data/funDo.loc - tool-data/lastz_seqs.loc - tool-data/liftOver.loc - tool-data/maf_index.loc - tool-data/maf_pairwise.loc - tool-data/microbial_data.loc - tool-data/phastOdds.loc - tool-data/perm_base_index.loc - tool-data/perm_color_index.loc - tool-data/quality_scores.loc - tool-data/regions.loc - tool-data/sam_fa_indices.loc - tool-data/sift_db.loc - tool-data/srma_index.loc - tool-data/twobit.loc - tool-data/shared/ucsc/builds.txt +SAMPLES=" + datatypes_conf.xml.sample + reports_wsgi.ini.sample + tool_conf.xml.sample + tool_data_table_conf.xml.sample + universe_wsgi.ini.sample + tool-data/shared/ucsc/builds.txt.sample + tool-data/*.sample "

# Create any missing config/location files -for file in $FROM_SAMPLE; do - if [ ! -f "$file" -a -f "$file.sample" ]; then - echo "Initializing $file from `basename $file`.sample" - cp $file.sample $file +for sample in $SAMPLES; do + file=`echo $sample | sed -e 's/.sample$//'` + if [ ! -f "$file" -a -f "$sample" ]; then + echo "Initializing $file from `basename $sample`" + cp $sample $file fi done