Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: a22af161ade4f2bccf81f9b009947a8b6c7ec579 https://github.com/galaxyproject/galaxy/commit/a22af161ade4f2bccf81f9b009947... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2016-02-20 (Sat, 20 Feb 2016) Changed paths: M lib/galaxy/config.py M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/display_applications/application.py M lib/galaxy/datatypes/sniff.py M lib/galaxy/managers/datasets.py M lib/galaxy/managers/taggable.py M lib/galaxy/managers/tags.py M lib/galaxy/model/__init__.py M lib/galaxy/model/metadata.py M lib/galaxy/tools/__init__.py M lib/galaxy/tools/actions/__init__.py M lib/galaxy/tools/data_manager/manager.py M lib/galaxy/tools/evaluation.py M lib/galaxy/tools/parameters/basic.py M lib/galaxy/tools/parameters/grouping.py M lib/galaxy/tools/parameters/sanitize.py M lib/galaxy/tools/parameters/validation.py M lib/galaxy/tools/test.py M lib/galaxy/util/__init__.py M lib/galaxy/util/sanitize_html.py M lib/galaxy/visualization/data_providers/registry.py M lib/galaxy/visualization/plugins/config_parser.py M lib/galaxy/web/base/controller.py M lib/galaxy/web/base/controllers/admin.py M lib/galaxy/web/form_builder.py M lib/galaxy/web/framework/base.py M lib/galaxy/web/framework/decorators.py M lib/galaxy/web/framework/helpers/__init__.py M lib/galaxy/web/framework/helpers/grids.py M lib/galaxy/web/framework/middleware/translogger.py M lib/galaxy/web/framework/webapp.py M lib/galaxy/webapps/galaxy/api/datasets.py M lib/galaxy/webapps/galaxy/api/jobs.py M lib/galaxy/webapps/galaxy/api/lda_datasets.py M lib/galaxy/webapps/galaxy/api/visualizations.py M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py M lib/galaxy/webapps/galaxy/controllers/data_manager.py M lib/galaxy/webapps/galaxy/controllers/dataset.py M lib/galaxy/webapps/galaxy/controllers/history.py M lib/galaxy/webapps/galaxy/controllers/library_common.py M lib/galaxy/webapps/galaxy/controllers/page.py M lib/galaxy/webapps/galaxy/controllers/requests_admin.py M lib/galaxy/webapps/galaxy/controllers/requests_common.py M lib/galaxy/webapps/galaxy/controllers/tag.py M lib/galaxy/webapps/galaxy/controllers/visualization.py M lib/galaxy/webapps/galaxy/controllers/workflow.py M lib/galaxy/webapps/tool_shed/framework/middleware/hg.py M lib/galaxy_utils/sequence/fasta.py M lib/galaxy_utils/sequence/fastq.py M lib/pulsar/client/manager.py M lib/tool_shed/galaxy_install/install_manager.py M lib/tool_shed/galaxy_install/tool_dependencies/recipe/env_file_builder.py M lib/tool_shed/util/basic_util.py M lib/tool_shed/util/common_util.py M lib/tool_shed/util/tool_util.py Log Message: ----------- For python2/3 compatibility, replace basestring with six's string_types, unicode with six's text_type. Commit: fbc40f69f68f4e5d547019b561429fd958c237f8 https://github.com/galaxyproject/galaxy/commit/fbc40f69f68f4e5d547019b561429... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2016-02-20 (Sat, 20 Feb 2016) Changed paths: M lib/pulsar/client/interface.py Log Message: ----------- use six's text_type Commit: da9cd12ae69d584be222f7979f2b5c4567106a99 https://github.com/galaxyproject/galaxy/commit/da9cd12ae69d584be222f7979f2b5... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2016-02-20 (Sat, 20 Feb 2016) Changed paths: M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/sniff.py M lib/galaxy/managers/taggable.py M lib/galaxy/managers/tags.py M lib/galaxy/model/__init__.py M lib/galaxy/tools/__init__.py M lib/galaxy/util/__init__.py M lib/galaxy/util/sanitize_html.py M lib/galaxy/web/framework/helpers/__init__.py M lib/galaxy/web/framework/helpers/grids.py M lib/galaxy/webapps/galaxy/controllers/library_common.py M lib/galaxy/webapps/galaxy/controllers/page.py M lib/galaxy/webapps/galaxy/controllers/requests_common.py M lib/galaxy/webapps/galaxy/controllers/workflow.py M lib/tool_shed/util/tool_util.py Log Message: ----------- Use unicodify Commit: 0028ac263634ee846b0fb9e0e134f6b771f50e1e https://github.com/galaxyproject/galaxy/commit/0028ac263634ee846b0fb9e0e134f... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2016-02-20 (Sat, 20 Feb 2016) Changed paths: M lib/galaxy/util/__init__.py Log Message: ----------- need binary type Commit: 8ee38f64f33305753aa96fc230d97a8fabda4885 https://github.com/galaxyproject/galaxy/commit/8ee38f64f33305753aa96fc230d97... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2016-02-20 (Sat, 20 Feb 2016) Changed paths: M lib/galaxy/datatypes/data.py M lib/galaxy/model/__init__.py M lib/galaxy/tools/__init__.py M lib/galaxy/util/sanitize_html.py M lib/galaxy/web/form_builder.py Log Message: ----------- Do not test if text_type instance before calling unicodify() Commit: 6653bcb63bb36c450f4a3d0a6722b4a8c04a6ae8 https://github.com/galaxyproject/galaxy/commit/6653bcb63bb36c450f4a3d0a6722b... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2016-02-20 (Sat, 20 Feb 2016) Changed paths: M lib/galaxy/model/__init__.py Log Message: ----------- remove unncessary if statements Commit: 66bce36a4075a0b111fff9832f100bba3566447f https://github.com/galaxyproject/galaxy/commit/66bce36a4075a0b111fff9832f100... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2016-02-20 (Sat, 20 Feb 2016) Changed paths: M lib/galaxy/tools/__init__.py M lib/galaxy/web/framework/helpers/grids.py M lib/galaxy/webapps/galaxy/controllers/requests_common.py Log Message: ----------- Indentation fixes, import json_fix from galaxy.util.json Commit: f706ed7e86244e183482ce18f68e71dcd6fcd5c3 https://github.com/galaxyproject/galaxy/commit/f706ed7e86244e183482ce18f68e7... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2016-02-20 (Sat, 20 Feb 2016) Changed paths: M lib/galaxy/web/framework/helpers/grids.py Log Message: ----------- properly encode column_filter Commit: 92fe009f965700f1a3b4e61d33c67c5348084d2a https://github.com/galaxyproject/galaxy/commit/92fe009f965700f1a3b4e61d33c67... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2016-02-20 (Sat, 20 Feb 2016) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- fix bad rebase Commit: 1b25944a5d83bf8893d4969452db67a0b2e61ba0 https://github.com/galaxyproject/galaxy/commit/1b25944a5d83bf8893d4969452db6... Author: Nicola Soranzo <nsoranzo@tiscali.it> Date: 2016-02-22 (Mon, 22 Feb 2016) Changed paths: M lib/galaxy/config.py M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/display_applications/application.py M lib/galaxy/datatypes/sniff.py M lib/galaxy/managers/datasets.py M lib/galaxy/managers/taggable.py M lib/galaxy/managers/tags.py M lib/galaxy/model/__init__.py M lib/galaxy/model/metadata.py M lib/galaxy/tools/__init__.py M lib/galaxy/tools/actions/__init__.py M lib/galaxy/tools/data_manager/manager.py M lib/galaxy/tools/evaluation.py M lib/galaxy/tools/parameters/basic.py M lib/galaxy/tools/parameters/grouping.py M lib/galaxy/tools/parameters/sanitize.py M lib/galaxy/tools/parameters/validation.py M lib/galaxy/tools/test.py M lib/galaxy/util/__init__.py M lib/galaxy/util/sanitize_html.py M lib/galaxy/visualization/data_providers/registry.py M lib/galaxy/visualization/plugins/config_parser.py M lib/galaxy/web/base/controller.py M lib/galaxy/web/base/controllers/admin.py M lib/galaxy/web/form_builder.py M lib/galaxy/web/framework/base.py M lib/galaxy/web/framework/decorators.py M lib/galaxy/web/framework/helpers/__init__.py M lib/galaxy/web/framework/helpers/grids.py M lib/galaxy/web/framework/middleware/translogger.py M lib/galaxy/web/framework/webapp.py M lib/galaxy/webapps/galaxy/api/datasets.py M lib/galaxy/webapps/galaxy/api/jobs.py M lib/galaxy/webapps/galaxy/api/lda_datasets.py M lib/galaxy/webapps/galaxy/api/visualizations.py M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py M lib/galaxy/webapps/galaxy/controllers/data_manager.py M lib/galaxy/webapps/galaxy/controllers/dataset.py M lib/galaxy/webapps/galaxy/controllers/history.py M lib/galaxy/webapps/galaxy/controllers/library_common.py M lib/galaxy/webapps/galaxy/controllers/page.py M lib/galaxy/webapps/galaxy/controllers/requests_admin.py M lib/galaxy/webapps/galaxy/controllers/requests_common.py M lib/galaxy/webapps/galaxy/controllers/tag.py M lib/galaxy/webapps/galaxy/controllers/visualization.py M lib/galaxy/webapps/galaxy/controllers/workflow.py M lib/galaxy/webapps/tool_shed/framework/middleware/hg.py M lib/galaxy_utils/sequence/fasta.py M lib/galaxy_utils/sequence/fastq.py M lib/pulsar/client/interface.py M lib/pulsar/client/manager.py M lib/tool_shed/galaxy_install/install_manager.py M lib/tool_shed/galaxy_install/tool_dependencies/recipe/env_file_builder.py M lib/tool_shed/util/basic_util.py M lib/tool_shed/util/common_util.py M lib/tool_shed/util/tool_util.py Log Message: ----------- Merge pull request #1731 from mvdbeek/python_2_3_string_handling Python 2/3 string handling Compare: https://github.com/galaxyproject/galaxy/compare/4e73d56bf1dd...1b25944a5d83