1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/38fcdb8f0e63/ changeset: 38fcdb8f0e63 user: clements date: 2011-12-19 11:44:31 summary: Updated "Example" images shown at the bottom of many "Operate on Genomic Invervals" tool pages. Old onew were looking dated. New ones look, well, newer, and cover more cases. affected #: 20 files diff -r bb5e05256c2997892f5cac6b1998bbe90896372d -r 38fcdb8f0e63a8430bb80bac4500ad4faa7a4115 static/operation_icons/gops_baseCoverage.gif Binary file static/operation_icons/gops_baseCoverage.gif has changed diff -r bb5e05256c2997892f5cac6b1998bbe90896372d -r 38fcdb8f0e63a8430bb80bac4500ad4faa7a4115 static/operation_icons/gops_clusterFind.gif Binary file static/operation_icons/gops_clusterFind.gif has changed diff -r bb5e05256c2997892f5cac6b1998bbe90896372d -r 38fcdb8f0e63a8430bb80bac4500ad4faa7a4115 static/operation_icons/gops_clusterMerge.gif Binary file static/operation_icons/gops_clusterMerge.gif has changed diff -r bb5e05256c2997892f5cac6b1998bbe90896372d -r 38fcdb8f0e63a8430bb80bac4500ad4faa7a4115 static/operation_icons/gops_complement.gif Binary file static/operation_icons/gops_complement.gif has changed diff -r bb5e05256c2997892f5cac6b1998bbe90896372d -r 38fcdb8f0e63a8430bb80bac4500ad4faa7a4115 static/operation_icons/gops_concatenate.gif Binary file static/operation_icons/gops_concatenate.gif has changed diff -r bb5e05256c2997892f5cac6b1998bbe90896372d -r 38fcdb8f0e63a8430bb80bac4500ad4faa7a4115 static/operation_icons/gops_intersectOverlappingIntervals.gif Binary file static/operation_icons/gops_intersectOverlappingIntervals.gif has changed diff -r bb5e05256c2997892f5cac6b1998bbe90896372d -r 38fcdb8f0e63a8430bb80bac4500ad4faa7a4115 static/operation_icons/gops_intersectOverlappingPieces.gif Binary file static/operation_icons/gops_intersectOverlappingPieces.gif has changed diff -r bb5e05256c2997892f5cac6b1998bbe90896372d -r 38fcdb8f0e63a8430bb80bac4500ad4faa7a4115 static/operation_icons/gops_joinFullOuter.gif Binary file static/operation_icons/gops_joinFullOuter.gif has changed diff -r bb5e05256c2997892f5cac6b1998bbe90896372d -r 38fcdb8f0e63a8430bb80bac4500ad4faa7a4115 static/operation_icons/gops_joinInner.gif Binary file static/operation_icons/gops_joinInner.gif has changed diff -r bb5e05256c2997892f5cac6b1998bbe90896372d -r 38fcdb8f0e63a8430bb80bac4500ad4faa7a4115 static/operation_icons/gops_joinLeftOuter.gif Binary file static/operation_icons/gops_joinLeftOuter.gif has changed diff -r bb5e05256c2997892f5cac6b1998bbe90896372d -r 38fcdb8f0e63a8430bb80bac4500ad4faa7a4115 static/operation_icons/gops_joinRecordsList.gif Binary file static/operation_icons/gops_joinRecordsList.gif has changed diff -r bb5e05256c2997892f5cac6b1998bbe90896372d -r 38fcdb8f0e63a8430bb80bac4500ad4faa7a4115 static/operation_icons/gops_joinRightOuter.gif Binary file static/operation_icons/gops_joinRightOuter.gif has changed diff -r bb5e05256c2997892f5cac6b1998bbe90896372d -r 38fcdb8f0e63a8430bb80bac4500ad4faa7a4115 static/operation_icons/gops_merge.gif Binary file static/operation_icons/gops_merge.gif has changed diff -r bb5e05256c2997892f5cac6b1998bbe90896372d -r 38fcdb8f0e63a8430bb80bac4500ad4faa7a4115 static/operation_icons/gops_subtractOverlappingIntervals.gif Binary file static/operation_icons/gops_subtractOverlappingIntervals.gif has changed diff -r bb5e05256c2997892f5cac6b1998bbe90896372d -r 38fcdb8f0e63a8430bb80bac4500ad4faa7a4115 static/operation_icons/gops_subtractOverlappingPieces.gif Binary file static/operation_icons/gops_subtractOverlappingPieces.gif has changed diff -r bb5e05256c2997892f5cac6b1998bbe90896372d -r 38fcdb8f0e63a8430bb80bac4500ad4faa7a4115 tools/new_operations/basecoverage.xml --- a/tools/new_operations/basecoverage.xml +++ b/tools/new_operations/basecoverage.xml @@ -36,6 +36,10 @@ .. _Screencasts: http://wiki.g2.bx.psu.edu/Learn/Interval%20Operations +**Example** + +.. image:: ./static/operation_icons/gops_baseCoverage.gif + </help> -</tool> \ No newline at end of file +</tool> diff -r bb5e05256c2997892f5cac6b1998bbe90896372d -r 38fcdb8f0e63a8430bb80bac4500ad4faa7a4115 tools/new_operations/cluster.xml --- a/tools/new_operations/cluster.xml +++ b/tools/new_operations/cluster.xml @@ -82,9 +82,15 @@ ----- -**Example** +**Examples** -.. image:: ./static/operation_icons/gops_cluster.gif +Find Clusters: + +.. image:: ./static/operation_icons/gops_clusterFind.gif + +Merge Clusters: + +.. image:: ./static/operation_icons/gops_clusterMerge.gif </help> -</tool> \ No newline at end of file +</tool> diff -r bb5e05256c2997892f5cac6b1998bbe90896372d -r 38fcdb8f0e63a8430bb80bac4500ad4faa7a4115 tools/new_operations/intersect.xml --- a/tools/new_operations/intersect.xml +++ b/tools/new_operations/intersect.xml @@ -129,9 +129,15 @@ ----- -**Example** +**Examples** -.. image:: ./static/operation_icons/gops_intersect.gif +Overlapping Intervals: + +.. image:: ./static/operation_icons/gops_intersectOverlappingIntervals.gif + +Overlapping Pieces of Intervals: + +.. image:: ./static/operation_icons/gops_intersectOverlappingPieces.gif </help> -</tool> \ No newline at end of file +</tool> diff -r bb5e05256c2997892f5cac6b1998bbe90896372d -r 38fcdb8f0e63a8430bb80bac4500ad4faa7a4115 tools/new_operations/join.xml --- a/tools/new_operations/join.xml +++ b/tools/new_operations/join.xml @@ -92,48 +92,26 @@ ----- -**Example** +**Examples** -If **First dataset** is:: +.. image:: ./static/operation_icons/gops_joinRecordsList.gif - chr1 10 100 Query1.1 - chr1 500 1000 Query1.2 - chr1 1100 1250 Query1.3 +Only records that are joined (inner join): -and **Second dataset** is:: +.. image:: ./static/operation_icons/gops_joinInner.gif - chr1 20 80 Query2.1 - chr1 2000 2204 Query2.2 - chr1 2500 3000 Query2.3 +All records of first dataset: +.. image:: ./static/operation_icons/gops_joinLeftOuter.gif -The four return options will generate: +All records of second dataset: +.. image:: ./static/operation_icons/gops_joinRightOuter.gif -- **Return only records that are joined**:: +All records of both datasets: - chr1 10 100 Query1.1 chr1 20 80 Query2.1 +.. image:: ./static/operation_icons/gops_joinFullOuter.gif -- **Return all records of first dataset**:: - - chr1 10 100 Query1.1 chr1 20 80 Query2.1 - chr1 500 1000 Query1.2 . . . . - chr1 1100 1250 Query1.3 . . . . - -- **Return all records of second dataset**:: - - chr1 10 100 Query1.1 chr1 20 80 Query2.1 - . . . . chr1 2000 2204 Query2.2 - . . . . chr1 2500 3000 Query2.3 - -- **Return all records of both datasets**:: - - chr1 10 100 Query1.1 chr1 20 80 Query2.1 - chr1 500 1000 Query1.2 . . . . - chr1 1100 1250 Query1.3 . . . . - . . . . chr1 2000 2204 Query2.2 - . . . . chr1 2500 3000 Query2.3 - </help> -</tool> \ No newline at end of file +</tool> diff -r bb5e05256c2997892f5cac6b1998bbe90896372d -r 38fcdb8f0e63a8430bb80bac4500ad4faa7a4115 tools/new_operations/subtract.xml --- a/tools/new_operations/subtract.xml +++ b/tools/new_operations/subtract.xml @@ -112,7 +112,13 @@ **Example** -.. image:: ./static/operation_icons/gops_subtract.gif +Intervals with no overlap: + +.. image:: ./static/operation_icons/gops_subtractOverlappingIntervals.gif + +Non-overlapping pieces of intervals: + +.. image:: ./static/operation_icons/gops_subtractOverlappingPieces.gif </help> -</tool> \ No newline at end of file +</tool> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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