Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 0c20f523fec2d38680b81969937157aee6acf1a6 https://github.com/galaxyproject/galaxy/commit/0c20f523fec2d38680b8196993715... Author: John Bradley <johnbradley2008@gmail.com> Date: 2018-06-30 (Sat, 30 Jun 2018) Changed paths: M lib/galaxy/datatypes/data.py Log Message: ----------- python3 get_file_peek doctest fix Commit: d961f9ca6cff533eaf578dda6b44612340d5e8e5 https://github.com/galaxyproject/galaxy/commit/d961f9ca6cff533eaf578dda6b446... Author: John Bradley <johnbradley2008@gmail.com> Date: 2018-06-30 (Sat, 30 Jun 2018) Changed paths: M lib/galaxy/datatypes/sniff.py Log Message: ----------- python3 FilePrefix line_iterator StringIO issue StringIO no longer has len and pos properties. Using len(getvalue()) and tell() instead. Commit: 2237bd4648e8595f9e52696a82253e56a4872892 https://github.com/galaxyproject/galaxy/commit/2237bd4648e8595f9e52696a82253... Author: John Bradley <johnbradley2008@gmail.com> Date: 2018-06-30 (Sat, 30 Jun 2018) Changed paths: M lib/galaxy/datatypes/sniff.py Log Message: ----------- sniff open/write doctest fixes consume return value from write so docktest doesn't complain Commit: e7d7b72665b64538d4967048cedb5fc2a48794a1 https://github.com/galaxyproject/galaxy/commit/e7d7b72665b64538d4967048cedb5... Author: John Bradley <johnbradley2008@gmail.com> Date: 2018-06-30 (Sat, 30 Jun 2018) Changed paths: M lib/galaxy/tools/parameters/basic.py Log Message: ----------- tools/parameters/basic doctests assert fixes Commit: 14f81bc2152d33909e761b146e263ba402061ced https://github.com/galaxyproject/galaxy/commit/14f81bc2152d33909e761b146e263... Author: John Bradley <johnbradley2008@gmail.com> Date: 2018-06-30 (Sat, 30 Jun 2018) Changed paths: M lib/galaxy/tools/parameters/basic.py Log Message: ----------- additional tools/parameters/basic doctests assert fix Commit: ee4baea86542226d723a3098114459de212c2d62 https://github.com/galaxyproject/galaxy/commit/ee4baea86542226d723a309811445... Author: John Bradley <johnbradley2008@gmail.com> Date: 2018-06-30 (Sat, 30 Jun 2018) Changed paths: M lib/galaxy/tools/util/maf_utilities.py Log Message: ----------- maf_utilities python3 compatible maketrans Commit: b05bd2ab98073d19dea221b8e2e5242de389bdf9 https://github.com/galaxyproject/galaxy/commit/b05bd2ab98073d19dea221b8e2e52... Author: John Bradley <johnbradley2008@gmail.com> Date: 2018-06-30 (Sat, 30 Jun 2018) Changed paths: M lib/galaxy/tools/util/maf_utilities.py Log Message: ----------- change to fix flake8 blank line issue Commit: b47be025c43b1620d2da638ad38de53860155a92 https://github.com/galaxyproject/galaxy/commit/b47be025c43b1620d2da638ad38de... Author: John Bradley <johnbradley2008@gmail.com> Date: 2018-06-30 (Sat, 30 Jun 2018) Changed paths: M lib/galaxy/tools/util/maf_utilities.py Log Message: ----------- create maketrans function in maf_utilities Trying to get flake8 to pass. flake8 didn't like way I assigned str.maketrans. Createing a function now that checks python version. Commit: 23079a0c947f25284e8ff54df77338f9f02379e4 https://github.com/galaxyproject/galaxy/commit/23079a0c947f25284e8ff54df7733... Author: John Bradley <johnbradley2008@gmail.com> Date: 2018-06-30 (Sat, 30 Jun 2018) Changed paths: M lib/galaxy/tools/util/maf_utilities.py Log Message: ----------- add back extra blank line wanted by flake8 Commit: 97f356b1b6cde2cc1772edaf1461a358a9b8a8ac https://github.com/galaxyproject/galaxy/commit/97f356b1b6cde2cc1772edaf1461a... Author: John Bradley <johnbradley2008@gmail.com> Date: 2018-06-30 (Sat, 30 Jun 2018) Changed paths: M lib/galaxy/tools/util/maf_utilities.py Log Message: ----------- simplify maf_utilities maketrans import Commit: 7cc2e6d48c2f43a76abf909d6fdb226560841cfa https://github.com/galaxyproject/galaxy/commit/7cc2e6d48c2f43a76abf909d6fdb2... Author: John Bradley <johnbradley2008@gmail.com> Date: 2018-06-30 (Sat, 30 Jun 2018) Changed paths: M lib/galaxy/tools/util/maf_utilities.py Log Message: ----------- remove unused variable in map_utilities Commit: 329374622c82b2d25b6d49468e1f2f28f75c5d96 https://github.com/galaxyproject/galaxy/commit/329374622c82b2d25b6d49468e1f2... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-07-01 (Sun, 01 Jul 2018) Changed paths: M lib/galaxy/datatypes/sniff.py Log Message: ----------- Use `with` statement in doctests Commit: af26564559f9c558ceb892f32a464a0c54a4046f https://github.com/galaxyproject/galaxy/commit/af26564559f9c558ceb892f32a464... Author: Nicola Soranzo <nicola.soranzo@gmail.com> Date: 2018-07-01 (Sun, 01 Jul 2018) Changed paths: M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/sniff.py M lib/galaxy/tools/parameters/basic.py M lib/galaxy/tools/util/maf_utilities.py Log Message: ----------- Merge pull request #6429 from johnbradley/python3-fixes Python 3 fixes from GCC-BOSC-2018 Compare: https://github.com/galaxyproject/galaxy/compare/c980d348f4d4...af26564559f9 **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.