Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 8d6e9d1d775c49148b2ecd0cecc49ad5a59372bd https://github.com/galaxyproject/galaxy/commit/8d6e9d1d775c49148b2ecd0cecc49... Author: y.hoogstrate@erasmusmc.nl <y.hoogstrate@erasmusmc.nl> Date: 2015-10-21 (Wed, 21 Oct 2015) Changed paths: M lib/galaxy/tools/actions/__init__.py M lib/galaxy/tools/parameters/output.py Log Message: ----------- Sets mappable metadata as list (e.g. column_names) from a tool wrapper Commit: fbc4fa16781f91d1f3fdfd92062352c440eeac4b https://github.com/galaxyproject/galaxy/commit/fbc4fa16781f91d1f3fdfd9206235... Author: y.hoogstrate@erasmusmc.nl <y.hoogstrate@erasmusmc.nl> Date: 2015-10-21 (Wed, 21 Oct 2015) Changed paths: M lib/galaxy/tools/parameters/output.py Log Message: ----------- put old line back Commit: 5f9e1e67c239583d35d8a7e06ad515f5323c6cc4 https://github.com/galaxyproject/galaxy/commit/5f9e1e67c239583d35d8a7e06ad51... Author: y.hoogstrate@erasmusmc.nl <y.hoogstrate@erasmusmc.nl> Date: 2015-10-21 (Wed, 21 Oct 2015) Changed paths: M lib/galaxy/tools/actions/__init__.py Log Message: ----------- Fixes flake8 error Commit: 134dd40fadcb8eab1c9e60d729f414166c74befe https://github.com/galaxyproject/galaxy/commit/134dd40fadcb8eab1c9e60d729f41... Author: youri <y.hoogstrate@erasmusmc.nl> Date: 2016-02-08 (Mon, 08 Feb 2016) Changed paths: M lib/galaxy/tools/actions/__init__.py Log Message: ----------- Passing metadata through update Commit: 8ab40d502578597408686f0de7481554cc9d2ef4 https://github.com/galaxyproject/galaxy/commit/8ab40d502578597408686f0de7481... Author: youri <y.hoogstrate@erasmusmc.nl> Date: 2016-02-08 (Mon, 08 Feb 2016) Changed paths: A .ci/check_controller.sh A .ci/check_mako.sh A .ci/first_startup.sh M .ci/flake8_blacklist.txt A .ci/flake8_py3_wrapper.sh M .ci/flake8_wrapper.sh A .ci/py3_sources.txt M .gitignore M .travis.yml M CONTRIBUTING.md M CONTRIBUTORS.md A Makefile M README.rst A client/.docker-build.sh A client/Dockerfile M client/GruntFile.js M client/README.md M client/bower.json A client/galaxy/scripts/apps/analysis.js A client/galaxy/scripts/apps/history-panel.js A client/galaxy/scripts/apps/login.js A client/galaxy/scripts/apps/tool-panel.js R client/galaxy/scripts/base.js R client/galaxy/scripts/galaxy-app-base.js R client/galaxy/scripts/galaxy.autocom_tagging.js R client/galaxy/scripts/galaxy.base.js R client/galaxy/scripts/galaxy.frame.js A client/galaxy/scripts/galaxy.js M client/galaxy/scripts/galaxy.library.js R client/galaxy/scripts/galaxy.masthead.js R client/galaxy/scripts/galaxy.menu.js M client/galaxy/scripts/galaxy.pages.js R client/galaxy/scripts/galaxy.panels.js R client/galaxy/scripts/galaxy.tools.js R client/galaxy/scripts/galaxy.ui.scrollPanel.js A client/galaxy/scripts/layout/masthead.js A client/galaxy/scripts/layout/menu.js A client/galaxy/scripts/layout/modal.js A client/galaxy/scripts/layout/page.js A client/galaxy/scripts/layout/panel.js A client/galaxy/scripts/layout/scratchbook.js R client/galaxy/scripts/libs/IE/IE7.js R client/galaxy/scripts/libs/IE/IE8.js R client/galaxy/scripts/libs/IE/blank.gif R client/galaxy/scripts/libs/IE/excanvas.js R client/galaxy/scripts/libs/IE/ie7-recalc.js A client/galaxy/scripts/libs/backbone.js R client/galaxy/scripts/libs/backbone/backbone.js A client/galaxy/scripts/libs/bootstrap-tour.js M client/galaxy/scripts/libs/d3.js R client/galaxy/scripts/libs/handlebars.runtime.js M client/galaxy/scripts/libs/jquery/jquery.dynatree.js M client/galaxy/scripts/libs/jquery/select2.js A client/galaxy/scripts/mvc/annotation.js R 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tools/filters/wig_to_bigwig.xml M tools/filters/wiggle_to_simple.py M tools/genomespace/genomespace_exporter.py M tools/genomespace/genomespace_importer.xml M tools/maf/interval2maf.py M tools/maf/interval2maf.xml M tools/maf/interval_maf_to_merged_fasta.py M tools/maf/maf_by_block_number.py M tools/maf/maf_filter.py M tools/maf/maf_limit_size.py M tools/maf/maf_limit_to_species.py M tools/maf/maf_reverse_complement.py M tools/maf/maf_split_by_species.py M tools/maf/maf_stats.py M tools/maf/maf_thread_for_species.py M tools/maf/maf_to_bed.py M tools/maf/maf_to_bed_code.py M tools/maf/maf_to_fasta_concat.py M tools/maf/maf_to_fasta_multiple_sets.py M tools/maf/maf_to_interval.py M tools/maf/vcf_to_maf_customtrack.py M tools/next_gen_conversion/fastq_conversions.py M tools/next_gen_conversion/fastq_gen_conv.py M tools/next_gen_conversion/solid2fastq.py M tools/next_gen_conversion/solid_to_fastq.py M tools/ngs_simulation/ngs_simulation.py M tools/stats/aggregate_scores_in_intervals.py M tools/stats/filtering.py M tools/stats/grouping.py M tools/stats/gsummary.py M tox.ini Log Message: ----------- Merge remote-tracking branch 'upstream/dev' into metadata_list_fix Commit: 061828aac6cb663eb48767204c9e6c604c5ef14a https://github.com/galaxyproject/galaxy/commit/061828aac6cb663eb48767204c9e6... Author: youri <y.hoogstrate@erasmusmc.nl> Date: 2016-02-08 (Mon, 08 Feb 2016) Changed paths: M lib/galaxy/tools/actions/__init__.py Log Message: ----------- Passing metadata through update Commit: d370d3b012d9dc7e7976a94939506c6e8e7907a2 https://github.com/galaxyproject/galaxy/commit/d370d3b012d9dc7e7976a94939506... Author: y.hoogstrate@erasmusmc.nl <y.hoogstrate@erasmusmc.nl> Date: 2016-02-09 (Tue, 09 Feb 2016) Changed paths: M lib/galaxy/tools/parser/output_actions.py Log Message: ----------- passing metadata through as list: revert value setting Commit: 5e7dd07db6532f54605c771aab706249511969a0 https://github.com/galaxyproject/galaxy/commit/5e7dd07db6532f54605c771aab706... Author: John Chilton <jmchilton@gmail.com> Date: 2016-02-09 (Tue, 09 Feb 2016) Changed paths: M lib/galaxy/tools/actions/__init__.py Log Message: ----------- Merge pull request #961 from yhoogstrate/metadata_list_fix Sets mappable list-type metadata (e.g. column_names) from a tool wrapper Compare: https://github.com/galaxyproject/galaxy/compare/34376b1d8f25...5e7dd07db653