1 new commit in galaxy-central:

https://bitbucket.org/galaxy/galaxy-central/commits/f9ae3e1162ff/ changeset: f9ae3e1162ff user: greg date: 2013-02-28 18:15:47 summary: Improve logging and comments in functional test framework for installing and testing tool shed repositories, and do not set test_errors column values unless tests actually failed. affected #: 1 file

diff -r fb3a05f1f28e0b0652065dc3c87155004e65f0b3 -r f9ae3e1162ffd9aba37db4bdb0f849e36ed4ccd9 test/install_and_test_tool_shed_repositories/functional_tests.py --- a/test/install_and_test_tool_shed_repositories/functional_tests.py +++ b/test/install_and_test_tool_shed_repositories/functional_tests.py @@ -363,17 +363,42 @@ log.info( "The embedded Galaxy application is running on %s:%s" % ( galaxy_test_host, galaxy_test_port ) ) log.info( "Repositories will be installed from the tool shed at %s" % galaxy_tool_shed_url ) success = False + repository_status = {} try: - repository_status = {} - # Iterate through a list of repository info dicts. - for repository_dict in get_repositories_to_install( galaxy_tool_shed_url, source='url' ): - metadata_revision_id = repository_dict[ 'id' ] - repository_dict[ 'tool_shed_url' ] = galaxy_tool_shed_url - repository_info = get_repository_info_from_api( galaxy_tool_shed_url, repository_dict ) + # Iterate through a list of repository info dicts + log.info( "Retrieving repositories to install from the URL:\n%s\n" % str( galaxy_tool_shed_url ) ) + repositories_to_install = get_repositories_to_install( galaxy_tool_shed_url, source='url' ) + log.info( "Retrieved %d repositories to install..." % len( repositories_to_install ) ) + for repository_to_install_dict in repositories_to_install: + """ + Each repository_to_install_dict looks something like: + {'repository_id': '175812cd7caaf439', + 'url': '/api/repository_revisions/175812cd7caaf439', + 'malicious': False, + 'downloadable': True, + 'changeset_revision': '2388033730f3', + 'id': '175812cd7caaf439'} + """ + repository_id = repository_to_install_dict.get( 'repository_id', None ) + changeset_revision = repository_to_install_dict.get( 'changeset_revision', None ) + metadata_revision_id = repository_to_install_dict[ 'id' ] + repository_to_install_dict[ 'tool_shed_url' ] = galaxy_tool_shed_url + repository_info = get_repository_info_from_api( galaxy_tool_shed_url, repository_to_install_dict ) # If a repository is deleted or malicious, we don't need to test it. if repository_info[ 'deleted' ] or repository_info[ 'deprecated' ]: + log.info( "Skipping revision %s of repository id %s since it is either deleted or deprecated..." % ( str( changeset_revision ), str( repository_id ) ) ) continue - repository_dict = dict( repository_info.items() + repository_dict.items() ) + log.info( "Installing and testing revision %s of repository id %s..." % ( str( changeset_revision ), str( repository_id ) ) ) + repository_dict = dict( repository_info.items() + repository_to_install_dict.items() ) + """ + Each repository_dict looks something like: + {'repository_id': '175812cd7caaf439', + 'url': '/api/repository_revisions/175812cd7caaf439', + 'malicious': False, + 'downloadable': True, + 'changeset_revision': '2388033730f3', + 'id': '175812cd7caaf439'} + """ # Generate the method that will install this repository into the running Galaxy instance. test_install_repositories.generate_install_method( repository_dict ) os.environ[ 'GALAXY_INSTALL_TEST_HOST' ] = galaxy_test_host @@ -410,8 +435,9 @@ # Run the configured tests. result = run_tests( test_config ) success = result.wasSuccessful() + repository_dict[ 'test_environment' ] = get_test_environment() repository_dict[ 'functional_tests_passed' ] = success - repository_status = dict( environment=get_test_environment(), tests=[] ) + test_errors = [] if success: register_test_success( galaxy_tool_shed_url, metadata_revision_id ) log.debug( 'Repository %s installed and passed functional tests.' % repository_dict[ 'name' ] ) @@ -444,7 +470,10 @@ tmp_output[ appending_to ].append( line ) for output_type in tmp_output: output[ output_type ] = '\n'.join( tmp_output[ output_type ] ) - repository_status[ 'tests' ].append( dict( test=label, output=output ) ) + test_errors.append( dict( test=label, output=output ) ) + if test_errors: + repository_status[ 'test_environment' ] = get_test_environment() + repository_status[ 'test_errors' ] = test_errors register_test_failure( galaxy_tool_shed_url, metadata_revision_id, repository_status ) log.debug( 'Repository %s installed, but did not pass functional tests.' % repository_dict[ 'name' ] ) # Delete the completed tool functional tests from the test_toolbox.__dict__, otherwise nose will find them and try to re-run the

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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