Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 9f75926e4dfc8c4d644d191ba324a5f8a40e2e7d https://github.com/galaxyproject/galaxy/commit/9f75926e4dfc8c4d644d191ba324a... Author: guerler <aysam.guerler@gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-composite.js M lib/galaxy/webapps/galaxy/controllers/workflow.py M lib/galaxy/workflow/modules.py M static/maps/mvc/tool/tool-form-composite.js.map M static/scripts/mvc/tool/tool-form-composite.js Log Message: ----------- Inject data module values in connected steps on initialization Commit: db4b78baad9d246d34b77f0e032cd35344f75587 https://github.com/galaxyproject/galaxy/commit/db4b78baad9d246d34b77f0e032cd... Author: guerler <aysam.guerler@gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-composite.js M static/maps/mvc/tool/tool-form-composite.js.map M static/scripts/mvc/tool/tool-form-composite.js Log Message: ----------- Use same dom append call for tool and data steps Commit: 7b2d71e86ee9d57db0a4412b908448f03ec333a8 https://github.com/galaxyproject/galaxy/commit/7b2d71e86ee9d57db0a4412b90844... Author: guerler <aysam.guerler@gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M lib/galaxy/tools/parameters/basic.py Log Message: ----------- Add missing get_initial_value for collection parameters, remove unused repeat avoiding mechanism for now Commit: b34757b6b1dd71d189ea1fd2c44c6f938b9344b3 https://github.com/galaxyproject/galaxy/commit/b34757b6b1dd71d189ea1fd2c44c6... Author: guerler <aysam.guerler@gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M lib/galaxy/model/__init__.py M lib/galaxy/tools/parameters/basic.py M lib/galaxy/workflow/modules.py Log Message: ----------- Use hda representative agent if collections are parsed Commit: bccf3d58f5afa0b95187583c099ba67d3cc60552 https://github.com/galaxyproject/galaxy/commit/bccf3d58f5afa0b95187583c099ba... Author: guerler <aysam.guerler@gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M lib/galaxy/model/__init__.py M lib/galaxy/tools/parameters/dynamic_options.py Log Message: ----------- Add hda agent generation to dynamic options Commit: bd194a885db94b0655c5781a25c3e0b292484cd7 https://github.com/galaxyproject/galaxy/commit/bd194a885db94b0655c5781a25c3e... Author: guerler <aysam.guerler@gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M lib/galaxy/model/__init__.py Log Message: ----------- Use one line if to determine atomic versus listed hda agents Commit: 65328ff3b7a9b2342b3acdc822a7620eb247b23d https://github.com/galaxyproject/galaxy/commit/65328ff3b7a9b2342b3acdc822a76... Author: guerler <aysam.guerler@gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M lib/galaxy/model/__init__.py M lib/galaxy/tools/parameters/basic.py M lib/galaxy/tools/parameters/dynamic_options.py M lib/galaxy/workflow/modules.py Log Message: ----------- Rename to_hda_agent to to_hda_representative Commit: 24ecf34c4f49b93d79d7d6b5f5d21aeec89733e0 https://github.com/galaxyproject/galaxy/commit/24ecf34c4f49b93d79d7d6b5f5d21... Author: guerler <aysam.guerler@gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M lib/galaxy/workflow/modules.py Log Message: ----------- Enhance collection to regular data field injection when multiple collections are parsed Commit: 4d6754f4a4e81b8dc3f90a32d72cfd9190077a2d https://github.com/galaxyproject/galaxy/commit/4d6754f4a4e81b8dc3f90a32d72cf... Author: guerler <aysam.guerler@gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M templates/webapps/galaxy/workflow/run.mako Log Message: ----------- Remove get initial value without repeats call from workflow run mako Commit: 15aba09847b03940167c38eb8e3a24214db4f92f https://github.com/galaxyproject/galaxy/commit/15aba09847b03940167c38eb8e3a2... Author: guerler <aysam.guerler@gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M lib/galaxy/tools/parameters/basic.py Log Message: ----------- Align spacing style of get_column_list function Commit: c8de0edc96d37be7ee7b32c11be74f39cb616b23 https://github.com/galaxyproject/galaxy/commit/c8de0edc96d37be7ee7b32c11be74... Author: guerler <aysam.guerler@gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M static/maps/mvc/tool/tool-form-composite.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tool/tool-form-composite.js Log Message: ----------- Instantly display workflow form upgrade messages, avoid fade in Commit: 6bff8ce48b8fc19bec2d0b02aefc617f93a2d2e8 https://github.com/galaxyproject/galaxy/commit/6bff8ce48b8fc19bec2d0b02aefc6... Author: guerler <aysam.guerler@gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-composite.js M client/galaxy/scripts/mvc/ui/ui-misc.js M static/maps/mvc/tool/tool-form-composite.js.map M static/maps/mvc/ui/ui-misc.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tool/tool-form-composite.js M static/scripts/mvc/ui/ui-misc.js Log Message: ----------- Instantly display workflow form upgrade messages, avoid fade in Commit: 52879750a7c297f6fb45c8aeec2c14712d302343 https://github.com/galaxyproject/galaxy/commit/52879750a7c297f6fb45c8aeec2c1... Author: guerler <aysam.guerler@gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M test/unit/tools/test_data_parameters.py Log Message: ----------- Align data tool parameter test cases for initial values Commit: efc850c32e15490df33dee5e164542791bc0b21c https://github.com/galaxyproject/galaxy/commit/efc850c32e15490df33dee5e16454... Author: guerler <aysam.guerler@gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-composite.js M static/scripts/mvc/tool/tool-form-composite.js Log Message: ----------- Fix padding to avoid scroll bar Commit: 24573f7ffb8e5797ae1589a9353f5937d114417c https://github.com/galaxyproject/galaxy/commit/24573f7ffb8e5797ae1589a9353f5... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2016-08-03 (Wed, 03 Aug 2016) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-composite.js M client/galaxy/scripts/mvc/ui/ui-misc.js M lib/galaxy/model/__init__.py M lib/galaxy/tools/parameters/basic.py M lib/galaxy/tools/parameters/dynamic_options.py M lib/galaxy/webapps/galaxy/controllers/workflow.py M lib/galaxy/workflow/modules.py M static/maps/mvc/tool/tool-form-composite.js.map M static/maps/mvc/ui/ui-misc.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tool/tool-form-composite.js M static/scripts/mvc/ui/ui-misc.js M templates/webapps/galaxy/workflow/run.mako M test/unit/tools/test_data_parameters.py Log Message: ----------- Merge branch 'inject_connected_inputs' into dev Compare: https://github.com/galaxyproject/galaxy/compare/66d5560da569...24573f7ffb8e