Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 497fe0bba1ebffe5b64142106f53ab3adde07056 https://github.com/galaxyproject/galaxy/commit/497fe0bba1ebffe5b64142106f53a... Author: guerler <aysam.guerler@gmail.com> Date: 2017-10-25 (Wed, 25 Oct 2017) Changed paths: R templates/admin/reload_tool.mako Log Message: ----------- Remove admin tool reload mako Commit: fab7b03d352fdfdf5be09d5bc7a9eb895b03da09 https://github.com/galaxyproject/galaxy/commit/fab7b03d352fdfdf5be09d5bc7a9e... Author: guerler <aysam.guerler@gmail.com> Date: 2017-10-25 (Wed, 25 Oct 2017) Changed paths: M client/galaxy/scripts/apps/panels/admin-panel.js M static/scripts/bundled/admin.bundled.js M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Remove reload option from admin panel Commit: 4a5dcd067efa3329141cda76a0ec1f9bbbfc175e https://github.com/galaxyproject/galaxy/commit/4a5dcd067efa3329141cda76a0ec1... Author: guerler <aysam.guerler@gmail.com> Date: 2017-10-25 (Wed, 25 Oct 2017) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-base.js M static/maps/mvc/tool/tool-form-base.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tool/tool-form-base.js Log Message: ----------- Remove reload option from tool form Commit: ea863cd1b525a3d931d87320a7f8990e1f87b361 https://github.com/galaxyproject/galaxy/commit/ea863cd1b525a3d931d87320a7f89... Author: guerler <aysam.guerler@gmail.com> Date: 2017-10-26 (Thu, 26 Oct 2017) Changed paths: M lib/galaxy/webapps/galaxy/controllers/admin.py Log Message: ----------- Remove associated controller endpoint from admin controller Commit: 99021c2036f009098bc1d2dbe18c36d29172abb4 https://github.com/galaxyproject/galaxy/commit/99021c2036f009098bc1d2dbe18c3... Author: guerler <aysam.guerler@gmail.com> Date: 2017-10-30 (Mon, 30 Oct 2017) Changed paths: M .travis.yml M Makefile M client/galaxy/scripts/apps/panels/admin-panel.js M client/galaxy/scripts/mvc/library/library-folderlist-view.js M client/galaxy/scripts/mvc/library/library-folderrow-view.js M client/galaxy/scripts/mvc/library/library-librarylist-view.js M client/galaxy/scripts/mvc/library/library-model.js A client/galaxy/scripts/mvc/library/library-util.js M client/galaxy/scripts/mvc/toolshed/repository-queue-view.js M client/galaxy/scripts/mvc/toolshed/repository-view.js M client/galaxy/scripts/mvc/tours.js M client/galaxy/style/less/base.less M client/galaxy/style/less/ui.less M client/gulpfile.js M client/package.json M client/yarn.lock M config/plugins/tours/core.galaxy_ui.yaml M config/plugins/tours/core.history.yaml M config/plugins/tours/core.scratchbook.yaml M doc/schema_template.md M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/managers/workflows.py M lib/galaxy/tools/xsd/galaxy.xsd M lib/galaxy/tours/__init__.py M lib/galaxy/util/path/ntpath.py M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py M lib/tool_shed/galaxy_install/grids/admin_toolshed_grids.py M run_tests.sh M static/maps/mvc/library/library-folderlist-view.js.map M static/maps/mvc/library/library-folderrow-view.js.map M static/maps/mvc/library/library-librarylist-view.js.map M static/maps/mvc/library/library-model.js.map A static/maps/mvc/library/library-util.js.map M static/maps/mvc/toolshed/repository-queue-view.js.map M static/maps/mvc/toolshed/repository-view.js.map M static/maps/mvc/tours.js.map M static/scripts/bundled/admin.bundled.js M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/library/library-folderlist-view.js M static/scripts/mvc/library/library-folderrow-view.js M static/scripts/mvc/library/library-librarylist-view.js M static/scripts/mvc/library/library-model.js A static/scripts/mvc/library/library-util.js M static/scripts/mvc/toolshed/repository-queue-view.js M static/scripts/mvc/toolshed/repository-view.js M static/scripts/mvc/tours.js M static/style/blue/base.css R templates/admin/tool_shed_repository/initiate_repository_installation.mako A templates/admin/tool_shed_repository/monitor_repository_installation.mako R templates/admin/tool_shed_repository/repository_installation_grid.mako R templates/admin/tool_shed_repository/tool_dependencies_grid.mako M test/api/test_tools.py M test/docker/base/Dockerfile M test/docker/base/ansible_vars.yml M test/docker/base/run_test_wrapper.sh A test/functional/tools/data_source.py M test/functional/tools/samples_tool_conf.xml A test/functional/tools/test_data_source.xml M test/qunit/Gruntfile.js M test/qunit/package.json M test/qunit/test-app.js M test/qunit/test-common.js R test/qunit/test-libs/qunit-1.23.1.css R test/qunit/test-libs/qunit-1.23.1.js R test/qunit/test-libs/sinon-1.17.7.js R test/qunit/test-libs/sinon-qunit-1.0.0.js M test/qunit/tests/form_tests.js M test/qunit/tests/galaxy-app-base.js M test/qunit/tests/graph.js M test/qunit/tests/hda-base.js M test/qunit/tests/history_contents_model_tests.js M test/qunit/tests/job-dag.js M test/qunit/tests/list-of-pairs-collection-creator.js M test/qunit/tests/masthead_tests.js M test/qunit/tests/metrics-logger.js M test/qunit/tests/modal_tests.js M test/qunit/tests/page_tests.js M test/qunit/tests/popover_tests.js M test/qunit/tests/ui_tests.js M test/qunit/tests/upload_dialog_tests.js M test/qunit/tests/utils_test.js M test/qunit/tests/workflow_editor_tests.js M test/shed_functional/base/twilltestcase.py M tox.ini Log Message: ----------- Merge branch 'dev' into remove_reload_buttons Commit: dc451272be3ecbaaad5a83c032bcf9913f7b9bf9 https://github.com/galaxyproject/galaxy/commit/dc451272be3ecbaaad5a83c032bcf... Author: guerler <aysam.guerler@gmail.com> Date: 2017-10-30 (Mon, 30 Oct 2017) Changed paths: M client/galaxy/scripts/apps/panels/admin-panel.js M static/scripts/bundled/admin.bundled.js M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Revise admin panel labels Commit: 760f846fdaf3284667e4b5a33c388f22255687ca https://github.com/galaxyproject/galaxy/commit/760f846fdaf3284667e4b5a33c388... Author: guerler <aysam.guerler@gmail.com> Date: 2017-10-30 (Mon, 30 Oct 2017) Changed paths: M lib/galaxy/webapps/galaxy/controllers/admin.py Log Message: ----------- Remove legacy controller endpoint, partially connected to ui Commit: 497d03104b5858838a6cd60711b6be5f85aa60a0 https://github.com/galaxyproject/galaxy/commit/497d03104b5858838a6cd60711b6b... Author: guerler <aysam.guerler@gmail.com> Date: 2017-10-30 (Mon, 30 Oct 2017) Changed paths: R templates/admin/package_tool.mako Log Message: ----------- Remove associated mako Commit: 319b6b9bfaf1578dca445c1decca061d2cf9dd34 https://github.com/galaxyproject/galaxy/commit/319b6b9bfaf1578dca445c1decca0... Author: guerler <aysam.guerler@gmail.com> Date: 2017-10-30 (Mon, 30 Oct 2017) Changed paths: M client/galaxy/scripts/apps/panels/admin-panel.js M static/scripts/bundled/admin.bundled.js M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Remove link without tool id from admin panel Commit: c61d2ce774c437aeeb0a23d0aa7b33f2349bfb9e https://github.com/galaxyproject/galaxy/commit/c61d2ce774c437aeeb0a23d0aa7b3... Author: guerler <aysam.guerler@gmail.com> Date: 2017-10-30 (Mon, 30 Oct 2017) Changed paths: M client/galaxy/scripts/apps/panels/admin-panel.js M static/scripts/bundled/admin.bundled.js M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Move manage views up in list Commit: 3731a9704996061545360cc339bcc8e55e7dc01a https://github.com/galaxyproject/galaxy/commit/3731a9704996061545360cc339bcc... Author: guerler <aysam.guerler@gmail.com> Date: 2017-10-30 (Mon, 30 Oct 2017) Changed paths: M client/galaxy/scripts/mvc/grid/grid-template.js M static/maps/mvc/grid/grid-template.js.map M static/scripts/bundled/admin.bundled.js M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/grid/grid-template.js Log Message: ----------- Fix error message status in toolshed grid Commit: 8f786c36109709eca46ef8f609e219fce0e8f4af https://github.com/galaxyproject/galaxy/commit/8f786c36109709eca46ef8f609e21... Author: guerler <aysam.guerler@gmail.com> Date: 2017-10-30 (Mon, 30 Oct 2017) Changed paths: M client/galaxy/scripts/apps/panels/admin-panel.js M static/scripts/bundled/admin.bundled.js M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Revise admin labels in server section Commit: a5c365c76fe5d6fb50043c2e88000f1945bdb68b https://github.com/galaxyproject/galaxy/commit/a5c365c76fe5d6fb50043c2e88000... Author: guerler <aysam.guerler@gmail.com> Date: 2017-10-30 (Mon, 30 Oct 2017) Changed paths: M templates/webapps/galaxy/admin/center.mako Log Message: ----------- Adjust labels in admin info view Commit: 62ad2da5f520b908da1664ab590d1c9494880f29 https://github.com/galaxyproject/galaxy/commit/62ad2da5f520b908da1664ab590d1... Author: Martin Cech <marten@bx.psu.edu> Date: 2017-11-01 (Wed, 01 Nov 2017) Changed paths: A .ci/tox_envs/flake8/Pipfile A .ci/tox_envs/flake8/requirements.txt A .ci/tox_envs/flake8_imports/Pipfile A .ci/tox_envs/flake8_imports/requirements.txt A .ci/tox_envs/update.sh M Makefile M client/galaxy/style/less/upload.less M config/local_conda_mapping.yml.sample M doc/source/releases/17.09_announce.rst M lib/galaxy/app.py M lib/galaxy/dependencies/dev-requirements.txt M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/webapps/galaxy/config_watchers.py M scripts/bootstrap_history.py M scripts/common_startup.sh M static/style/blue/base.css M tox.ini Log Message: ----------- Merge branch 'dev' into remove_reload_buttons Commit: 48ff086efce477aa0c05fcf53ab318e92e0207e1 https://github.com/galaxyproject/galaxy/commit/48ff086efce477aa0c05fcf53ab31... Author: Martin Cech <marten@bx.psu.edu> Date: 2017-11-01 (Wed, 01 Nov 2017) Changed paths: M client/galaxy/scripts/mvc/collection/list-collection-creator.js M client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js M lib/galaxy/jobs/__init__.py M lib/galaxy/tools/parameters/grouping.py R lib/galaxy/webapps/galaxy/api/request_types.py R lib/galaxy/webapps/galaxy/api/requests.py R lib/galaxy/webapps/galaxy/api/samples.py M lib/galaxy/webapps/galaxy/buildapp.py M run_tests.sh M static/maps/mvc/collection/list-collection-creator.js.map M static/maps/mvc/collection/list-of-pairs-collection-creator.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/collection/list-collection-creator.js M static/scripts/mvc/collection/list-of-pairs-collection-creator.js M test/docker/base/Dockerfile M test/docker/base/run_test_wrapper.sh A test/docker/base/selenium/LICENSE A test/docker/base/selenium/README A test/docker/base/selenium/entry_point.sh A test/docker/base/selenium/functions.sh A test/docker/base/selenium/generate_config A test/docker/base/selenium/wrap_chrome_binary Log Message: ----------- Merge branch 'dev' into remove_reload_buttons Commit: 3f14454d57631d326e79005d79898e9524d364f6 https://github.com/galaxyproject/galaxy/commit/3f14454d57631d326e79005d79898... Author: Martin Cech <marten@bx.psu.edu> Date: 2017-11-01 (Wed, 01 Nov 2017) Changed paths: M client/galaxy/scripts/apps/panels/admin-panel.js M client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js M static/maps/mvc/collection/list-of-pairs-collection-creator.js.map M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js.map Log Message: ----------- run prettier Commit: 605b2272b26c15cd8c1c5c3f6a98a593d8b00f78 https://github.com/galaxyproject/galaxy/commit/605b2272b26c15cd8c1c5c3f6a98a... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-11-01 (Wed, 01 Nov 2017) Changed paths: M client/galaxy/scripts/apps/panels/admin-panel.js M client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js M client/galaxy/scripts/mvc/grid/grid-template.js M client/galaxy/scripts/mvc/tool/tool-form-base.js M lib/galaxy/webapps/galaxy/controllers/admin.py M static/maps/mvc/collection/list-of-pairs-collection-creator.js.map M static/maps/mvc/grid/grid-template.js.map M static/maps/mvc/tool/tool-form-base.js.map M static/scripts/bundled/admin.bundled.js M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/grid/grid-template.js M static/scripts/mvc/tool/tool-form-base.js R templates/admin/package_tool.mako R templates/admin/reload_tool.mako M templates/webapps/galaxy/admin/center.mako Log Message: ----------- Merge pull request #4866 from guerler/remove_reload_buttons Remove tool reloading buttons and packaging endpoint, revise admin labels Compare: https://github.com/galaxyproject/galaxy/compare/79d91813399a...605b2272b26c