1 new commit in galaxy-central:

https://bitbucket.org/galaxy/galaxy-central/changeset/af24105e47a9/ changeset: af24105e47a9 user: dan date: 2011-12-08 22:25:08 summary: UCSC BAM display will now pass the pairEndsByName attribute. Closes #455. affected #: 1 file

diff -r d93edf2dc43612e38a9e7aafac4d50fba60ae647 -r af24105e47a9966566ad92833f0990805da69ac3 display_applications/ucsc/bam.xml --- a/display_applications/ucsc/bam.xml +++ b/display_applications/ucsc/bam.xml @@ -12,6 +12,6 @@ <url>${ucsc_link}db=${qp($bam_file.dbkey)}&amp;hgt.customText=${qp($track.url)}</url><param type="data" name="bam_file" url="galaxy_${DATASET_HASH}.bam" /><param type="data" name="bai_file" url="galaxy_${DATASET_HASH}.bam.bai" metadata="bam_index" /><!-- UCSC expects index file to exist as bam_file_name.bai --> - <param type="template" name="track" viewable="True">track type="bam" name="${bam_file.name.replace( '\', '\\' ).replace( '"', '\"' )}" bigDataUrl="${bam_file.url}" db="${bam_file.dbkey}"</param> + <param type="template" name="track" viewable="True">track type="bam" name="${bam_file.name.replace( '\', '\\' ).replace( '"', '\"' )}" bigDataUrl="${bam_file.url}" db="${bam_file.dbkey}" pairEndsByName="."</param></dynamic_links></display>

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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