Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: bcc38ca365f66914800b82fbed2aaa47e078bc11 https://github.com/galaxyproject/usegalaxy-playbook/commit/bcc38ca365f669148... Author: Dave B <dave@bx.psu.edu> Date: 2018-06-20 (Wed, 20 Jun 2018) Changed paths: M env/main/files/galaxy/var/integrated_tool_panel.xml M env/main/files/galaxy/var/shed_data_manager_conf.xml M env/main/files/galaxy/var/shed_tool_conf.xml M env/main/files/galaxy/var/shed_tool_data_table_conf.xml Log Message: ----------- Tool updates and installations: - length_and_gc_content v0.1.1 - trimmomatic v0.36.5 - deeptools_bam_coverage v3.0.2.0 - salmon v0.9.1 - kallisto_quant v0.43.1.3 - kallisto_pseudo v0.43.1.1 - sailfish v0.10.1.1 - limma_voom v3.34.9.7 - edger v3.20.7.2 - goseq v1.26.0 - deseq2 v2.11.40.2 - featurecounts v1.6.0.6 - tophat2 v2.1.1 - stringtie v1.3.3.2 - ggplot2_heatmap2 v2.2.1+galaxy0 - rseqc_deletion_profile v2.6.4 - rseqc_geneBody_coverage2 v2.6.4.1 - rseqc_RPKM_saturation v2.6.4.1 - rseqc_infer_experiment v2.6.4.1 - rseqc_read_NVC v2.6.4 - rseqc_RNA_fragment_size v2.6.4.1 - rseqc_geneBody_coverage v2.6.4.2 - rseqc_bam_stat v2.6.4 - rseqc_tin v2.6.4.1 - rseqc_read_duplication v2.6.4 - rseqc_junction_saturation v2.6.4.1 - rseqc_read_GC v2.6.4 - rseqc_insertion_profile v2.6.4 - rseqc_bam2wig v2.6.4 - rseqc_FPKM_count v2.6.4.1 - rseqc_read_distribution v2.6.4.1 - rseqc_clipping_profile v2.6.4 - rseqc_read_quality v2.6.4 - rseqc_read_hexamer v2.6.4 - rseqc_mismatch_profile v2.6.4 - rseqc_junction_annotation v2.6.4.1 - rseqc_inner_distance v2.6.4.1 **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.