1 new commit in galaxy-central:

https://bitbucket.org/galaxy/galaxy-central/commits/5f774e034512/ changeset: 5f774e034512 user: greg date: 2013-03-01 15:14:38 summary: Add the method for displaying tool functional test errors for a repository in the tool shed to the repository controller in preparation for the upcoming install and test framework. affected #: 1 file

diff -r 15eafd606d97f9700b5ec9bfc92bb8c50badd365 -r 5f774e034512d06c497febcf042d3dbc44d91cf8 lib/galaxy/webapps/tool_shed/controllers/repository.py --- a/lib/galaxy/webapps/tool_shed/controllers/repository.py +++ b/lib/galaxy/webapps/tool_shed/controllers/repository.py @@ -1137,6 +1137,9 @@ @web.expose @web.require_login( "deprecate repository" ) def deprecate( self, trans, **kwd ): + """Mark a repository in the tool shed as deprecated or not deprecated.""" + # Marking a repository in the tool shed as deprecated has no effect on any downloadable changeset revisions that may be associated with the + # repository. Revisions are not marked as not downlaodable because those that have installed the repository must be allowed to get updates. params = util.Params( kwd ) message = util.restore_text( params.get( 'message', '' ) ) status = params.get( 'status', 'done' ) @@ -1195,6 +1198,43 @@ status='error' ) )

@web.expose + def display_tool_functional_test_errors( self, trans, repository_id, repository_metadata_id, **kwd ): + params = util.Params( kwd ) + message = util.restore_text( params.get( 'message', '' ) ) + status = params.get( 'status', 'done' ) + repository = suc.get_repository_by_id( trans.app, repository_id ) + if repository: + repository_metadata = suc.get_repository_metadata_by_id( trans, repository_metadata_id ) + changeset_revision = repository_metadata.changeset_revision + if repository_metadata: + metadata = repository_metadata.metadata + if metadata: + return trans.fill_template( '/webapps/tool_shed/repository/display_tool_functional_test_errors.mako', + repository=repository, + repository_metadata=repository_metadata, + message=message, + status=status ) + else: + message = 'Missing metadata for revision <b>%s</b> of repository <b>%s</b> owned by <b>%s</b>.' % \ + ( str( changeset_revision ), str( repository.name ), str( repository.user.username ) ) + else: + message = 'Invalid repository_metadata_id <b>%s</b> received for displaying functional test errors for repository <b>%s</b>.' % \ + ( str( repository_metadata_id ), str( repository.name ) ) + else: + message = 'Invalid repository_id received for displaying functional test errors.<b>%s</b>.' % str( repository_id ) + return trans.response.send_redirect( web.url_for( controller='repository', + action='browse_repositories', + message=message, + status='error' ) ) + return trans.response.send_redirect( web.url_for( controller='repository', + action='browse_repository', + operation='view_or_manage_repository', + id=repository_id, + changeset_revision=changeset_revision, + message=message, + status='error' ) ) + + @web.expose def download( self, trans, repository_id, changeset_revision, file_type, **kwd ): # Download an archive of the repository files compressed as zip, gz or bz2. params = util.Params( kwd ) @@ -2995,6 +3035,8 @@ revision_label = suc.get_revision_label( trans, repository, changeset_revision ) repository_metadata = suc.get_repository_metadata_by_changeset_revision( trans, repository_id, changeset_revision ) if repository_metadata: + repository_metadata_id = trans.security.encode_id( repository_metadata.id ) + tool_test_errors = json.from_json_string( repository_metadata.tool_test_errors ) metadata = repository_metadata.metadata if metadata: if 'tools' in metadata: @@ -3026,7 +3068,9 @@ if guid: tool_lineage = self.get_versions_of_tool( trans, repository, repository_metadata, guid ) else: + repository_metadata_id = None metadata = None + tool_test_errors = None is_malicious = suc.changeset_is_malicious( trans, repository_id, repository.tip( trans.app ) ) changeset_revision_select_field = build_changeset_revision_select_field( trans, repository, @@ -3045,10 +3089,12 @@ review_id = None return trans.fill_template( "/webapps/tool_shed/repository/view_tool_metadata.mako", repository=repository, + repository_metadata_id=repository_metadata_id, metadata=metadata, tool=tool, tool_metadata_dict=tool_metadata_dict, tool_lineage=tool_lineage, + tool_test_errors=tool_test_errors, changeset_revision=changeset_revision, revision_label=revision_label, changeset_revision_select_field=changeset_revision_select_field,

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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