Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: d0a011675323ba7e8deba588ae0ae6ed9c23f0fe https://github.com/galaxyproject/galaxy/commit/d0a011675323ba7e8deba588ae0ae... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2015-12-05 (Sat, 05 Dec 2015) Changed paths: M lib/galaxy/tools/toolbox/base.py Log Message: ----------- Enable lookup of tools from other tool sheds. Commit: c040a18b4b164e58a45d1c4f6da65f1eacf18ed5 https://github.com/galaxyproject/galaxy/commit/c040a18b4b164e58a45d1c4f6da65... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2015-12-05 (Sat, 05 Dec 2015) Changed paths: M lib/galaxy/tools/toolbox/base.py Log Message: ----------- Modify get_tool() directly instead of using decorator. Commit: 2d168a2c07798ab736676a1eb865ae6976b48464 https://github.com/galaxyproject/galaxy/commit/2d168a2c07798ab736676a1eb865a... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2015-12-05 (Sat, 05 Dec 2015) Changed paths: M lib/galaxy/tools/toolbox/base.py Log Message: ----------- Remove whitespaces in blank line. Commit: 1be4f85404c75be364cb20b3c460ea3f51c4dae2 https://github.com/galaxyproject/galaxy/commit/1be4f85404c75be364cb20b3c460e... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2015-12-05 (Sat, 05 Dec 2015) Changed paths: M client/galaxy/scripts/mvc/tools/tools-form-base.js M lib/galaxy/managers/workflows.py M lib/galaxy/tools/__init__.py M lib/galaxy/workflow/modules.py M static/maps/mvc/tools/tools-form-base.js.map M static/scripts/mvc/tools/tools-form-base.js Log Message: ----------- Add messages inform users of changes in the tool_id. Commit: 4f1359a0a6d703c8a40b6bb015e89d991d97570e https://github.com/galaxyproject/galaxy/commit/4f1359a0a6d703c8a40b6bb015e89... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2015-12-05 (Sat, 05 Dec 2015) Changed paths: M .gitignore A client/galaxy/scripts/apps/analysis.js A client/galaxy/scripts/apps/history-panel.js A client/galaxy/scripts/apps/login.js A client/galaxy/scripts/apps/tool-panel.js R client/galaxy/scripts/base.js R client/galaxy/scripts/galaxy-app-base.js R client/galaxy/scripts/galaxy.autocom_tagging.js R client/galaxy/scripts/galaxy.base.js R client/galaxy/scripts/galaxy.frame.js A client/galaxy/scripts/galaxy.js M client/galaxy/scripts/galaxy.library.js R client/galaxy/scripts/galaxy.masthead.js R client/galaxy/scripts/galaxy.menu.js M client/galaxy/scripts/galaxy.pages.js R client/galaxy/scripts/galaxy.panels.js R client/galaxy/scripts/galaxy.tools.js R client/galaxy/scripts/galaxy.ui.scrollPanel.js A client/galaxy/scripts/layout/masthead.js A client/galaxy/scripts/layout/menu.js A client/galaxy/scripts/layout/modal.js A client/galaxy/scripts/layout/page.js A 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templates/webapps/galaxy/dataset/tabular_chunked.mako M templates/webapps/galaxy/galaxy.masthead.mako M templates/webapps/galaxy/galaxy.panels.mako M templates/webapps/galaxy/history/display.mako M templates/webapps/galaxy/history/embed.mako M templates/webapps/galaxy/history/view.mako M templates/webapps/galaxy/history/view_multiple.mako M templates/webapps/galaxy/library/common/ldda_edit_info.mako M templates/webapps/galaxy/library/common/move_library_item.mako M templates/webapps/galaxy/library/common/upload.mako M templates/webapps/galaxy/page/editor.mako M templates/webapps/galaxy/requests/common/create_request.mako M templates/webapps/galaxy/requests/common/find_samples.mako R templates/webapps/galaxy/root/index.mako M templates/webapps/galaxy/visualization/display.mako M templates/webapps/galaxy/visualization/display_in_frame.mako M templates/webapps/galaxy/visualization/sweepster.mako M templates/webapps/galaxy/workflow/editor.mako M templates/webapps/galaxy/workflow/run.mako M test/api/helpers.py M test/api/test_jobs.py M test/base/twilltestcase.py M test/casperjs/api-history-permission-tests.js M test/casperjs/spaceghost.js M test/qunit/test-app.js M test/qunit/test-common.js M test/qunit/test-data/bootstrapped.js M test/qunit/tests/galaxy-app-base.js M test/qunit/tests/workflow_editor_tests.js M test/tool_shed/test_data/1440_files/complex_dependency/tool_dependencies.xml Log Message: ----------- Merge branch 'dev' of github.com:galaxyproject/galaxy into cross_toolshed_tool_fetching Commit: 77f034019b93bdd539a495a89318bcb1e51b3993 https://github.com/galaxyproject/galaxy/commit/77f034019b93bdd539a495a89318b... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2015-12-05 (Sat, 05 Dec 2015) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Fix failing api test Commit: 3a023f4cae6b9b6b25c1d389b9ba2ad7223cb24a https://github.com/galaxyproject/galaxy/commit/3a023f4cae6b9b6b25c1d389b9ba2... Author: John Chilton <jmchilton@gmail.com> Date: 2015-12-06 (Sun, 06 Dec 2015) Changed paths: M client/galaxy/scripts/mvc/tool/tools-form-base.js M lib/galaxy/managers/workflows.py M lib/galaxy/tools/__init__.py M lib/galaxy/tools/toolbox/base.py M lib/galaxy/workflow/modules.py M static/maps/mvc/tools/tools-form-base.js.map M static/scripts/mvc/tools/tools-form-base.js Log Message: ----------- Merge pull request #818 from mvdbeek/cross_toolshed_tool_fetching Look up installed tools from different toolshed(s) Compare: https://github.com/galaxyproject/galaxy/compare/4fe36f8d6a15...3a023f4cae6b