Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: bbd31f70f165c860100bff4d892f8d96d7236e75 https://github.com/galaxyproject/galaxy/commit/bbd31f70f165c860100bff4d892f8... Author: Dave B <dave@bx.psu.edu> Date: 2015-07-14 (Tue, 14 Jul 2015) Changed paths: M lib/tool_shed/galaxy_install/tool_dependencies/recipe/recipe_manager.py M lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py Log Message: ----------- Add regex_replace tool dependency action. Commit: f80c7f88f96fd4a8e0c23599bef43477dd3909f5 https://github.com/galaxyproject/galaxy/commit/f80c7f88f96fd4a8e0c23599bef43... Author: Dave B <dave@bx.psu.edu> Date: 2015-07-14 (Tue, 14 Jul 2015) Changed paths: M lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py Log Message: ----------- Add documentation to the execute_step method. Commit: 938361cee04436c78b0729aed87f2646a34913dd https://github.com/galaxyproject/galaxy/commit/938361cee04436c78b0729aed87f2... Author: Dave B <dave@bx.psu.edu> Date: 2015-07-14 (Tue, 14 Jul 2015) Changed paths: M lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py Log Message: ----------- Improved memory usage for regex_replace action. Commit: a46ddd12211b6a0a33f19204095ac077062975ef https://github.com/galaxyproject/galaxy/commit/a46ddd12211b6a0a33f19204095ac... Author: Dave B <dave@bx.psu.edu> Date: 2015-07-15 (Wed, 15 Jul 2015) Changed paths: M lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py Log Message: ----------- Minor cleanup to regex_replace. - Iterate through the input file in a more pythonic way. - Flush the output file, just in case. Commit: fa82f2ded3d07ec9a60631809ad4596310d22bca https://github.com/galaxyproject/galaxy/commit/fa82f2ded3d07ec9a60631809ad45... Author: Björn Grüning <bjoern@gruenings.eu> Date: 2015-09-10 (Thu, 10 Sep 2015) Changed paths: M lib/tool_shed/galaxy_install/tool_dependencies/recipe/recipe_manager.py M lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py Log Message: ----------- Merge pull request #457 from davebx/td_regex_replace Add regex_replace tool dependency action. Compare: https://github.com/galaxyproject/galaxy/compare/2b43a271ed59...fa82f2ded3d0