1 new changeset in galaxy-central:

http://bitbucket.org/galaxy/galaxy-central/changeset/5716ef8d312d/ changeset: r5541:5716ef8d312d user: jgoecks date: 2011-05-11 21:07:24 summary: Relax diff calculation for Cuffdiff test to account for non-deterministic output. affected #: 1 file (5 bytes)

--- a/tools/ngs_rna/cuffdiff_wrapper.xml Wed May 11 11:36:22 2011 -0400 +++ b/tools/ngs_rna/cuffdiff_wrapper.xml Wed May 11 15:07:24 2011 -0400 @@ -167,12 +167,12 @@ Line diffs are needed because cuffdiff does not produce deterministic output. TODO: can we find datasets that lead to deterministic behavior? --> - <output name="isoforms_exp" file="cuffdiff_out1.txt" lines_diff="56"/> - <output name="genes_exp" file="cuffdiff_out2.txt" lines_diff="30"/> + <output name="isoforms_exp" file="cuffdiff_out1.txt" lines_diff="200"/> + <output name="genes_exp" file="cuffdiff_out2.txt" lines_diff="200"/><output name="tss_groups_exp" file="cuffdiff_out3.txt"/><output name="cds_exp_fpkm_tracking" file="cuffdiff_out4.txt"/> - <output name="isoforms_fpkm_tracking" file="cuffdiff_out5.txt" lines_diff="16"/> - <output name="genes_fpkm_tracking" file="cuffdiff_out6.txt" lines_diff="8"/> + <output name="isoforms_fpkm_tracking" file="cuffdiff_out5.txt" lines_diff="200"/> + <output name="genes_fpkm_tracking" file="cuffdiff_out6.txt" lines_diff="200"/><output name="tss_groups_fpkm_tracking" file="cuffdiff_out7.txt"/><output name="cds_fpkm_tracking" file="cuffdiff_out8.txt"/><output name="splicing_diff" file="cuffdiff_out9.txt"/>

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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