1 new changeset in galaxy-central:

http://bitbucket.org/galaxy/galaxy-central/changeset/05b089557d0d/ changeset: r5144:05b089557d0d user: dannon date: 2011-02-28 20:32:36 summary: mosaik: Test case uses sim_size instead of diff now, to get around the changing RG tag. affected #: 1 file (18 bytes)

--- a/tools/sr_mapping/mosaik.xml Mon Feb 28 14:04:53 2011 -0500 +++ b/tools/sr_mapping/mosaik.xml Mon Feb 28 14:32:36 2011 -0500 @@ -13,8 +13,7 @@ #end if MosaikBuild -fr #if $genomeSource.refGenomeSource == 'indexed': - ##$genomeSource.indexReference - ${ filter( lambda x: str( x[0] ) == str( $genomeSource.indexReference ), $__app__.tool_data_tables[ 'mosaik_indexes' ].get_fields() )[0][-1] } + ${ filter( lambda x: str( x[0] ) == str( $genomeSource.indexReference ), $__app__.tool_data_tables[ 'mosaik_indexes' ].get_fields() )[0][-1] } #else: $genomeSource.historyReference #end if @@ -95,7 +94,7 @@ <param name="act" value="35"/><param name="bw" value="19"/><param name="mhp" value="100"/> - <output name="output" ftype="sam" file="mosaik_test_out.sam" sort="True"/> + <output name="output" ftype="sam" file="mosaik_test_out.sam" compare="sim_size" delta="0"/></test></tests><help>

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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