Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 291527226755f7cf3210bb2f2d550ee1248184cd https://github.com/galaxyproject/galaxy/commit/291527226755f7cf3210bb2f2d550... Author: John Chilton <jmchilton@gmail.com> Date: 2018-02-25 (Sun, 25 Feb 2018) Changed paths: M lib/galaxy/tools/cwl/__init__.py M lib/galaxy/tools/cwl/parser.py M lib/galaxy/tools/cwl/representation.py M lib/galaxy/tools/cwl/runtime_actions.py M lib/galaxy/tools/cwl/schema.py A lib/galaxy/tools/cwl/util.py M lib/galaxy/tools/deps/mulled/invfile.lua M lib/galaxy/tools/deps/mulled/mulled_build.py M lib/galaxy/tools/deps/mulled/mulled_build_files.py M lib/galaxy/tools/deps/mulled/util.py M lib/galaxy/tools/deps/requirements.py M lib/galaxy/tools/linters/command.py M lib/galaxy/util/__init__.py M lib/galaxy/util/checkers.py M lib/galaxy/util/compression_utils.py M lib/galaxy/util/path/__init__.py Log Message: ----------- Update to latest galaxy-lib. Includes: - Fixes for multi-requirement container building via mulled via https://github.com/galaxyproject/galaxy-lib/pull/84. - Fixes for Conda search problems https://github.com/galaxyproject/galaxy-lib/pull/83. - Updates to CWL library support https://github.com/galaxyproject/galaxy-lib/pull/78. - Make bz2file dependency optional (xref https://github.com/galaxyproject/galaxy-lib/pull/79) - Python 3 fixes for path stuff - runtime fixes caught because galaxy-lib runs tests using Python 3 https://github.com/galaxyproject/galaxy-lib/pull/85/commits/c056e39451ca8b4b... and https://github.com/galaxyproject/galaxy-lib/pull/85/commits/c7cc9caba389770f...) - Python 3 fix for linter (https://github.com/galaxyproject/galaxy-lib/pull/88/commits/17d167662cda2ae4...). Commit: a6c8317d1d5d1eaa633c8a06d2ba9cd02c472716 https://github.com/galaxyproject/galaxy/commit/a6c8317d1d5d1eaa633c8a06d2ba9... Author: John Chilton <jmchilton@gmail.com> Date: 2018-02-25 (Sun, 25 Feb 2018) Changed paths: M lib/galaxy/tools/deps/commands.py Log Message: ----------- Bring in Nicola's Python 3 fixes. https://github.com/galaxyproject/galaxy-lib/commit/fcfb1aed1a08760857d5154a6... https://github.com/galaxyproject/galaxy-lib/commit/704b2400a5cbfdb49d60508c5... Commit: 2af4091e42b621720602734db5e408f28fe64fe4 https://github.com/galaxyproject/galaxy/commit/2af4091e42b621720602734db5e40... Author: Nicola Soranzo <nsoranzo@tiscali.it> Date: 2018-02-26 (Mon, 26 Feb 2018) Changed paths: M lib/galaxy/tools/cwl/__init__.py M lib/galaxy/tools/cwl/parser.py M lib/galaxy/tools/cwl/representation.py M lib/galaxy/tools/cwl/runtime_actions.py M lib/galaxy/tools/cwl/schema.py A lib/galaxy/tools/cwl/util.py M lib/galaxy/tools/deps/commands.py M lib/galaxy/tools/deps/mulled/invfile.lua M lib/galaxy/tools/deps/mulled/mulled_build.py M lib/galaxy/tools/deps/mulled/mulled_build_files.py M lib/galaxy/tools/deps/mulled/util.py M lib/galaxy/tools/deps/requirements.py M lib/galaxy/tools/linters/command.py M lib/galaxy/util/__init__.py M lib/galaxy/util/checkers.py M lib/galaxy/util/compression_utils.py M lib/galaxy/util/path/__init__.py Log Message: ----------- Merge pull request #5602 from jmchilton/galaxy-lib-update-20180223 Update against galaxy-lib Compare: https://github.com/galaxyproject/galaxy/compare/91a0c0342166...2af4091e42b6