Dataset Display

From aysam.guerler@gmail.com Wed Oct 2 14:56:50 2013 From: sam guerler To: galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] Tabular data not displaying in main panel Date: Wed, 02 Oct 2013 14:56:11 -0400 Message-ID: In-Reply-To: <1380739687.27109.25.camel@threonin> MIME-Version: 1.0 Content-Type: multipart/mixed; boundary="===============3546194477224595938==" --===============3546194477224595938== Content-Type: text/plain; charset="utf-8" Content-Transfer-Encoding: quoted-printable Hi Peter, Does the Javascript console of the browser show any error messages? Thanks, Sam On Wed, Oct 2, 2013 at 2:48 PM, Bj=C3=B6rn Gr=C3=BCning < bjoern.gruening(a)pharmazie.uni-freiburg.de> wrote: > Hi Peter, > > we can confirm. Latest Galaxy stable version and its occurring randomly. > I was not able to reproduce it by myself. > > Cheers, > Bjoern > > > Hi all, > > > > Multiple users of our internal Galaxy server have reported with > > multiple browsers that tabular data is not displayed in the main > > central panel. The preview in the history works, but clicking on > > the "eye" icon gives a blank page. > > > > I can confirm this in Firefox 24.0 and Safari 6.0.5, the HTML > > for the central frame looks blank but is actually a script when > > viewed via the frame source. The tabular file data is there in > > the script's first_data_chunk entry - but does not get shown. > > An except is shown below. > > > > Has anyone else noticed this problem? I believe it began > > when I last updated this Galaxy instance, but was not > > noticed immediately. > > > > Thanks, > > > > Peter > > > > ----------------------- > > > > I believe we are running the current stable release, or at least > > the latest commit on the default branch from galaxy-dist > > > > $ hg pull > > warning: bitbucket.org certificate with fingerprint > > 24:9c:45:8b:9c:aa:ba:55:4e:01:6d:58:ff:e4:28:7d:2a:14:ae:3b not > > verified (check hostfingerprints or web.cacerts config setting) > > real URL is https://bitbucket.org/galaxy/galaxy-dist > > pulling from http://bitbucket.org/galaxy/galaxy-dist > > searching for changes > > no changes found > > > > $ hg update > > 0 files updated, 0 files merged, 0 files removed, 0 files unresolved > > > > $ hg branch > > default > > > > [galaxy(a)ppserver galaxy-dist]$ hg log -b default | head > > changeset: 10411:c42567f43aa7 > > user: greg > > date: Mon Aug 19 13:19:56 2013 -0400 > > summary: Filter invalid objects when generating the list of > > repository_dependencies objects that are associated with a tool shed > > repository installed into Galaxy. > > > > changeset: 10410:e9ee9c5d30ae > > user: Dave Bouvier > > date: Mon Aug 19 13:08:45 2013 -0400 > > summary: Remove duplicate method from the install and test's > > functional_tests.py. > > ... > > > > > > ----------------------- > > > > > > > > > > > > Dataset Display > > charset=3Dutf-8" /> > > > > > media=3D"screen" rel=3D"Stylesheet" type=3D"text/css" /> > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > -- > > ___________________________________________________________ > > Please keep all replies on the list by using "reply all" > > in your mail client. To manage your subscriptions to this > > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ > > > > To search Galaxy mailing lists use the unified search at: > > http://galaxyproject.org/search/mailinglists/ > > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > --===============3546194477224595938== Content-Type: text/html Content-Transfer-Encoding: base64 Content-Disposition: attachment; filename="attachment.htm" MIME-Version: 1.0 PGRpdiBkaXI9Imx0ciI+SGkgUGV0ZXIsPGRpdj48YnI+PC9kaXY+PGRpdj5Eb2VzIHRoZSBKYXZh c2NyaXB0IGNvbnNvbGUgb2YgdGhlIGJyb3dzZXIgc2hvdyBhbnkgZXJyb3IgbWVzc2FnZXM/PC9k aXY+PGRpdj48YnI+PC9kaXY+PGRpdj5UaGFua3MsPC9kaXY+PGRpdj5TYW08L2Rpdj48L2Rpdj48 ZGl2IGNsYXNzPSJnbWFpbF9leHRyYSI+PGJyPjxicj48ZGl2IGNsYXNzPSJnbWFpbF9xdW90ZSI+ Ck9uIFdlZCwgT2N0IDIsIDIwMTMgYXQgMjo0OCBQTSwgQmr2cm4gR3L8bmluZyA8c3BhbiBkaXI9 Imx0ciI+Jmx0OzxhIGhyZWY9Im1haWx0bzpiam9lcm4uZ3J1ZW5pbmdAcGhhcm1hemllLnVuaS1m cmVpYnVyZy5kZSIgdGFyZ2V0PSJfYmxhbmsiPmJqb2Vybi5ncnVlbmluZ0BwaGFybWF6aWUudW5p 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