From hrh@fmi.ch Thu Oct 3 03:02:30 2013 From: Hans-Rudolf Hotz To: galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] Tabular data not displaying in main panel Date: Thu, 03 Oct 2013 09:02:15 +0200 Message-ID: <524D1677.4000508@fmi.ch> In-Reply-To: <1380739687.27109.25.camel@threonin> MIME-Version: 1.0 Content-Type: multipart/mixed; boundary="===============1172132906564044958==" --===============1172132906564044958== Content-Type: text/plain; charset="utf-8" Content-Transfer-Encoding: quoted-printable Hi Peter and Bjoern we had similar problems in August, when we upgraded to=20 'release_2013.06.03'. The problem has disappeared now. At the time I had the suspicion, it only happened to browser sessions=20 which were already open before the upgrade, Hence, closing the browser,=20 and starting again helped. But this was just a guess. Regards, Hans-Rudolf On 10/02/2013 08:48 PM, Bj=C3=B6rn Gr=C3=BCning wrote: > Hi Peter, > > we can confirm. Latest Galaxy stable version and its occurring randomly. > I was not able to reproduce it by myself. > > Cheers, > Bjoern > >> Hi all, >> >> Multiple users of our internal Galaxy server have reported with >> multiple browsers that tabular data is not displayed in the main >> central panel. The preview in the history works, but clicking on >> the "eye" icon gives a blank page. >> >> I can confirm this in Firefox 24.0 and Safari 6.0.5, the HTML >> for the central frame looks blank but is actually a script when >> viewed via the frame source. The tabular file data is there in >> the script's first_data_chunk entry - but does not get shown. >> An except is shown below. >> >> Has anyone else noticed this problem? I believe it began >> when I last updated this Galaxy instance, but was not >> noticed immediately. >> >> Thanks, >> >> Peter >> >> ----------------------- >> >> I believe we are running the current stable release, or at least >> the latest commit on the default branch from galaxy-dist >> >> $ hg pull >> warning: bitbucket.org certificate with fingerprint >> 24:9c:45:8b:9c:aa:ba:55:4e:01:6d:58:ff:e4:28:7d:2a:14:ae:3b not >> verified (check hostfingerprints or web.cacerts config setting) >> real URL is https://bitbucket.org/galaxy/galaxy-dist >> pulling from http://bitbucket.org/galaxy/galaxy-dist >> searching for changes >> no changes found >> >> $ hg update >> 0 files updated, 0 files merged, 0 files removed, 0 files unresolved >> >> $ hg branch >> default >> >> [galaxy(a)ppserver galaxy-dist]$ hg log -b default | head >> changeset: 10411:c42567f43aa7 >> user: greg >> date: Mon Aug 19 13:19:56 2013 -0400 >> summary: Filter invalid objects when generating the list of >> repository_dependencies objects that are associated with a tool shed >> repository installed into Galaxy. >> >> changeset: 10410:e9ee9c5d30ae >> user: Dave Bouvier >> date: Mon Aug 19 13:08:45 2013 -0400 >> summary: Remove duplicate method from the install and test's >> functional_tests.py. >> ... >> >> >> ----------------------- >> >> >> >> >> >> Dataset Display >> >> >> > media=3D"screen" rel=3D"Stylesheet" type=3D"text/css" /> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> -- >> ___________________________________________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> http://lists.bx.psu.edu/ >> >> To search Galaxy mailing lists use the unified search at: >> http://galaxyproject.org/search/mailinglists/ > > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > --===============1172132906564044958==--