From CahaisV@iarc.fr Fri Nov  4 08:50:59 2016
From: Vincent Cahais <CahaisV@iarc.fr>
To: galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] filter options
Date: Fri, 04 Nov 2016 12:50:57 +0000
Message-ID: <18310e24-9555-48cc-d700-8888427411b8@iarc.fr>
In-Reply-To: <5ae8c776-286c-f4f2-9c71-0ca4e452d250@tiscali.it>
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Sure, my combo-box is correctly filled with all options, but unfiltered.

<table comment_char=3D"#" name=3D"dbindel">
         <columns>value, dbkey, name, path</columns>
         <file path=3D"****" />
     </table>
</tables>

Le 04/11/2016 =C3=A0 13:42, Nicola Soranzo a =C3=A9crit :
> Hi Vincent,
> have you defined the dbindel table in config/tool_data_table_conf.xml ?
>
> Cheers,
> Nicola
>
> On 04/11/16 08:09, Vincent Cahais wrote:
>> Dear All,
>>
>> I try to filter options for a param linked to a datatable.
>> I want to keep only options with the same dbkey as my input file. But i
>> cannot make it work.
>>
>> <param name=3D"input" type=3D"data" format=3D"bam" label=3D"Bam file"/>
>> <param name=3D"dbindel" type=3D"select" force_select=3D"true" label=3D"ind=
el
>> database">
>>           <options from_data_table=3D"dbindel" />
>>           <filter type=3D"data_meta" ref=3D"input" key=3D"dbkey" />
>>           <filter type=3D"remove_value" key=3D"dbkey"/>
>> </param>
>>
>> ##dbindels
>> #<unique_build_id>   <dbkey>   <display_name> <file_path>
>> hg38    hg38    Human
>> /data/genome/hg38/dbindel/Mills_and_1000G_gold_standard.indels.hg38.vcf
>> mm10_1  mm10    Mouse [All]
>> /data/genomes/mm10/dbindel/mgp.v5.merged.indels.dbSNP142.normed.vcf.gz
>> mm10_2  mm10    Mouse [129P2_OlaHsd]
>> /data/genome/mm10/dbindel/129P2_OlaHsd.mgp.v5.indels.dbSNP142.normed.vcf.g=
z=20
>>
>>
>> Thank you for help,
>>
>> Vincent
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