From p.j.a.cock@googlemail.com Tue Mar 13 12:16:53 2018 From: Peter Cock To: galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] Error during FASTQ preview Date: Tue, 13 Mar 2018 16:16:51 +0000 Message-ID: In-Reply-To: MIME-Version: 1.0 Content-Type: multipart/mixed; boundary="===============2170286278621489929==" --===============2170286278621489929== Content-Type: text/plain; charset="utf-8" Content-Transfer-Encoding: quoted-printable This could be a special character unicode issue, but my guess is something has gone wrong with compression. Can you identify the file on disk (easy via the history "i" for information icon if this option is enabled; by default Galaxy does not tell you the file path)? Then try the Unix command "head" on the file to inspect it manually - is it plain text FASTQ? Peter On Tue, Mar 13, 2018 at 4:02 PM, Previti wrote: > Dear all, > > I've recently had following error occur on our local Galaxy instance. > > Every time I want to preview a fastq file it gives this: > > Content Encoding Error > > The page you are trying to view cannot be shown because it uses an invalid > or unsupported form of compression. > > Please contact the website owners to inform them of this problem. > > Any idea how to solve this...? This is the first time I'm seeing it....I > tried changing the data type multiple times (fastq, fastq.gz, > fastqsanger...etc) but this doesn't get rid of it. > > Best regards, > > Christopher Previti > > > > -- > Dr. Christopher Previti > Genomics and Proteomics Core Facility > High Throughput Sequencing (W190) > Bioinformatician > > German Cancer Research Center (DKFZ) > Foundation under Public Law > Im Neuenheimer Feld 580 > 69120 Heidelberg > Germany > Room: B2.102 (INF580/TP3) > Phone: +49 6221 42-4661 > > christopher.previti(a)dkfz.de > www.dkfz.de > > Management Board: Prof. Dr. Michael Baumann, Prof. Dr. Josef Puchta > VAT-ID No.: DE143293537 > > Vertraulichkeitshinweis: Diese Nachricht ist ausschlie=C3=9Flich f=C3=BCr d= ie Personen > bestimmt, an die sie adressiert ist. > Sie kann vertrauliche und/oder nur f=C3=BCr den/die Empf=C3=A4nger bestimmte > Informationen enthalten. Sollten Sie nicht > der bestimmungsgem=C3=A4=C3=9Fe Empf=C3=A4nger sein, kontaktieren Sie bitte= den Absender > und l=C3=B6schen Sie die Mitteilung. > Jegliche unbefugte Verwendung der Informationen in dieser Nachricht ist > untersagt. > > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/

On Tue, Mar 13, 2018 at 4:02 PM, Previti <christopher.previti(a)dkfz-heidelberg.de> wrote:

Dear all,

I've recently had following error occur on our local Galaxy instance.

Every time I want to preview a fastq file it gives this:

Content Encoding Error

The page you are trying to view cannot be shown because it uses an invalid or unsupported form of compression.

    Please contact the website owners to inform them of this problem.

Any idea how to solve this...? This is the first time I'm seeing it....I tried changing the data type multiple times (fastq, fastq.gz, fastqsanger...etc) but this doesn't get rid of it.

Best regards,

Christopher Previti



--
Dr. Christopher Previti
Genomics and Proteomics Core Facility
High Throughput Sequencing (W190)
Bioinformatician

German Cancer Research Center (DKFZ)
Foundation under Public Law
Im Neuenheimer Feld 580
69120 Heidelberg
Germany
Room: B2.102 (INF580/TP3)
Phone: +49 6221 42-4661

christopher.previti(a)dkfz.de
www.dkfz.de

Management Board: Prof. Dr. Michael Baumann, Prof. Dr. Josef Puchta
VAT-ID No.: DE143293537

Vertraulichkeitshinweis: Diese Nachricht ist ausschlie=C3=9Flich f=C3=BCr die Personen besti= mmt, an die sie adressiert ist.
Sie kann vertrauliche und/oder nur f=C3=BCr den/die Empf=C3=A4nger bestimmte Informationen enthalten. Sollten Sie nicht
der bestimmungsgem=C3=A4=C3=9Fe Empf=C3=A4nger sein, kontaktieren Sie bitte den Absender und l=C3=B6schen Sie die Mitteilung.
Jegliche unbefugte Verwendung der Informationen in dieser Nachricht ist untersagt.



    

  



___________________________________________________________

Please keep all replies on the list by using "reply all"

in your mail client.  To manage your subscriptions to this

and other Galaxy lists, please use the interface at:

  https://lists.galaxyproject.org/



To search Galaxy mailing lists use the unified search at:

  http://galaxyproject.org/search/
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