From marten@bx.psu.edu Fri Sep 2 13:05:54 2016 From: Martin =?utf-8?q?=C4=8Cech?= To: galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] Testtoolshed status Date: Fri, 02 Sep 2016 17:05:42 +0000 Message-ID: In-Reply-To: <274211f4-a7ea-2712-b642-5a7e7daa7808@bx.psu.edu> MIME-Version: 1.0 Content-Type: multipart/mixed; boundary="===============7006940675021600512==" --===============7006940675021600512== Content-Type: text/plain; charset="utf-8" Content-Transfer-Encoding: 8bit This has been fixed now, thanks Steve for the report and sorry for the trouble. Martin On Fri, Sep 2, 2016 at 10:20 AM Dave Bouvier wrote: > Steve, > > Thank you for reporting this issue, we've determined a potential cause > and are working to correct it. > > - > Dave Bouvier > http://galaxyproject.org > http://usegalaxy.org > > On 09/02/2016 03:29 AM, Steve Cassidy wrote: > > I’m getting a 500 response from the testtoolshed when I try to upload a > > tool via planemo: > > > > ➜ alveo-galaxy-tools git:(master) ✗ planemo shed_update --shed_target > > testtoolshed apitools > > cd '/Users/steve/projects/alveo-galaxy-tools/apitools' && git rev-parse > HEAD > > cd '/Users/steve/projects/alveo-galaxy-tools/apitools' && git diff > --quiet > > Could not update alveoimport > > Unexpected HTTP status code: 500: > > Internal Server Error > > > >

Internal Server Error

> >

The server has either erred or is incapable of performing > > the requested operation. > > > >
> >

> >
> >
WSGI Server
> > > > > > > > Repository metadata updated successfully for repository alveoimport. > > Failed to update a repository. > > > > In addition, I just got a “Tool Shed could not be reached” message via > > the web interface, so i’m wondering if something is up. > > > > Thanks, > > > > Steve > > — > > Department of Computing, Macquarie University > > http://web.science.mq.edu.au/~cassidy > > > > > > > > ___________________________________________________________ > > Please keep all replies on the list by using "reply all" > > in your mail client. To manage your subscriptions to this > > and other Galaxy lists, please use the interface at: > > https://lists.galaxyproject.org/ > > > > To search Galaxy mailing lists use the unified search at: > > http://galaxyproject.org/search/mailinglists/ > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. 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