From davide.cittaro@ifom-ieo-campus.it Fri Sep 17 04:59:38 2010 From: Davide Cittaro To: galaxy-dev@lists.galaxyproject.org Subject: [galaxy-dev] external display application styles Date: Fri, 17 Sep 2010 10:59:32 +0200 Message-ID: <6744216A-7B12-4917-A396-267F69BC1D8D@ifom-ieo-campus.it> MIME-Version: 1.0 Content-Type: multipart/mixed; boundary="===============5841584516353148635==" --===============5841584516353148635== Content-Type: text/plain; charset="utf-8" Content-Transfer-Encoding: quoted-printable Hi all, I need the users to see the direct link for BAM files so that they can copy/p= aste it in their desktop visualizer (either IGV, IGB, whatever...). I could write the application xml definition and it works properly: $track.url Select "File -> Load from URL..." in IGV, then copy the following link: ${bam_file.url} I just would like now to have this page using galaxy css so that I can write = nicer instruction (with colors and images) for the dummiest end-user. I see t= hat the resulting page source encloses everything between
 tags:


  
    
      "
        HERE IS THE CONTENT OF THE APPLICATION
      "
    
How can I override this behavior? I mean, I can edit the template (which is t= he template?) but that would affect every other display application... Thanks d /* Davide Cittaro Cogentech - Consortium for Genomic Technologies via adamello, 16 20139 Milano Italy tel.: +39(02)574303007 e-mail: davide.cittaro(a)ifom-ieo-campus.it */ --===============5841584516353148635== Content-Type: text/html Content-Transfer-Encoding: base64 Content-Disposition: attachment; filename="attachment.htm" MIME-Version: 1.0 PGh0bWw+PGhlYWQ+PC9oZWFkPjxib2R5IHN0eWxlPSJ3b3JkLXdyYXA6IGJyZWFrLXdvcmQ7IC13 ZWJraXQtbmJzcC1tb2RlOiBzcGFjZTsgLXdlYmtpdC1saW5lLWJyZWFrOiBhZnRlci13aGl0ZS1z cGFjZTsgIj5IaSBhbGwsPGRpdj5JIG5lZWQgdGhlIHVzZXJzIHRvIHNlZSB0aGUgZGlyZWN0IGxp bmsgZm9yIEJBTSBmaWxlcyBzbyB0aGF0IHRoZXkgY2FuIGNvcHkvcGFzdGUgaXQgaW4gdGhlaXIg ZGVza3RvcCB2aXN1YWxpemVyIChlaXRoZXIgSUdWLCBJR0IsIHdoYXRldmVyLi4uKS48L2Rpdj48 ZGl2PkkgY291bGQgd3JpdGUgdGhlIGFwcGxpY2F0aW9uIHhtbCBkZWZpbml0aW9uIGFuZCBpdCB3 b3JrcyBwcm9wZXJseTo8L2Rpdj48ZGl2Pjxicj48L2Rpdj48ZGl2PjxkaXY+Jmx0O2Rpc3BsYXkg aWQ9Imlndl9iYW0iIHZlcnNpb249IjEuMC4wIiBuYW1lPSJ2aWV3IGxpbmsgZm9yIiZndDs8L2Rp dj48ZGl2PiZuYnNwOyZuYnNwOyAmbmJzcDsmbHQ7bGluayBpZD0iaWd2IiBuYW1lPSJJR1YiJmd0 OzwvZGl2PjxkaXY+Jm5ic3A7Jm5ic3A7ICZuYnNwOyAmbmJzcDsgJm5ic3A7Jmx0O3VybCZndDsk dHJhY2sudXJsJmx0Oy91cmwmZ3Q7PC9kaXY+PGRpdj4mbmJzcDsmbmJzcDsgJm5ic3A7ICZuYnNw OyAmbmJzcDsmbHQ7cGFyYW0gdHlwZT0iZGF0YSIgbmFtZT0iYmFtX2ZpbGUiIHVybD0iZ2FsYXh5 XyR7REFUQVNFVF9IQVNIfS5iYW0iIHN0cmlwX2h0dHBzPSJUcnVlIiAvJmd0OzwvZGl2PjxkaXY+ Jm5ic3A7Jm5ic3A7ICZuYnNwOyAmbmJzcDsgJm5ic3A7Jmx0O3BhcmFtIHR5cGU9ImRhdGEiIG5h bWU9ImJhaV9maWxlIiB1cmw9ImdhbGF4eV8ke0RBVEFTRVRfSEFTSH0uYmFtLmJhaSIgbWV0YWRh dGE9ImJhbV9pbmRleCIgc3RyaXBfaHR0cHM9IlRydWUiIC8mZ3Q7Jmx0OyEtLSBVQ1NDIGV4cGVj dHMgaW5kZXggZmlsZSB0byBleGlzdCBhcyBiYW1fZmlsZV9uYW1lLmJhaSAtLSZndDs8L2Rpdj48 ZGl2PiZuYnNwOyZuYnNwOyAmbmJzcDsgJm5ic3A7ICZuYnNwOyZsdDtwYXJhbSB0eXBlPSJ0ZW1w bGF0ZSIgbmFtZT0idHJhY2siIHZpZXdhYmxlPSJUcnVlIiBzdHJpcF9odHRwcz0iVHJ1ZSImZ3Q7 PC9kaXY+PGRpdj5TZWxlY3QgIkZpbGUgLSZndDsgTG9hZCBmcm9tIFVSTC4uLiIgaW4gSUdWLCB0 aGVuIGNvcHkgdGhlIGZvbGxvd2luZyBsaW5rOjwvZGl2PjxkaXY+PGJyPjwvZGl2PjxkaXY+JHti YW1fZmlsZS51cmx9PC9kaXY+PGRpdj4mbHQ7L3BhcmFtJmd0OzwvZGl2PjxkaXY+Jm5ic3A7Jm5i c3A7ICZuYnNwOyZsdDsvbGluayZndDs8L2Rpdj48ZGl2PiZsdDsvZGlzcGxheSZndDs8L2Rpdj48 ZGl2Pjxicj48L2Rpdj48ZGl2PkkganVzdCB3b3VsZCBsaWtlIG5vdyB0byBoYXZlIHRoaXMgcGFn ZSB1c2luZyBnYWxheHkgY3NzIHNvIHRoYXQgSSBjYW4gd3JpdGUgbmljZXIgaW5zdHJ1Y3Rpb24g KHdpdGggY29sb3JzIGFuZCBpbWFnZXMpIGZvciB0aGUgZHVtbWllc3QgZW5kLXVzZXIuIEkgc2Vl IHRoYXQgdGhlIHJlc3VsdGluZyBwYWdlIHNvdXJjZSBlbmNsb3NlcyBldmVyeXRoaW5nIGJldHdl ZW4gJmx0O3ByZS8mZ3Q7IHRhZ3M6PC9kaXY+PGRpdj48YnI+PC9kaXY+PGRpdj4mbHQ7aHRtbCZn dDs8L2Rpdj48ZGl2PiZuYnNwOyZuYnNwOyZsdDtib2R5Jmd0OzwvZGl2PjxkaXY+Jm5ic3A7Jm5i c3A7ICZuYnNwOyZsdDtwcmUgc3R5bGU9IndvcmQtd3JhcDogYnJlYWstd29yZDsgd2hpdGUtc3Bh Y2U6IHByZS13cmFwOyImZ3Q7PC9kaXY+PGRpdj4mbmJzcDsmbmJzcDsgJm5ic3A7ICZuYnNwOyI8 L2Rpdj48ZGl2PiZuYnNwOyZuYnNwOyAmbmJzcDsgJm5ic3A7ICZuYnNwO0hFUkUgSVMgVEhFIENP TlRFTlQgT0YgVEhFIEFQUExJQ0FUSU9OPC9kaXY+PGRpdj4mbmJzcDsmbmJzcDsgJm5ic3A7ICZu YnNwOyI8L2Rpdj48ZGl2PiZuYnNwOyZuYnNwOyAmbmJzcDsmbHQ7L3ByZSZndDs8L2Rpdj48ZGl2 PiZuYnNwOyZuYnNwOyZsdDsvYm9keSZndDs8L2Rpdj48ZGl2PiZsdDsvaHRtbCZndDs8L2Rpdj48 ZGl2Pjxicj48L2Rpdj48ZGl2PkhvdyBjYW4gSSBvdmVycmlkZSB0aGlzIGJlaGF2aW9yPyBJIG1l YW4sIEkgY2FuIGVkaXQgdGhlIHRlbXBsYXRlICh3aGljaCBpcyB0aGUgdGVtcGxhdGU/KSBidXQg dGhhdCB3b3VsZCBhZmZlY3QgZXZlcnkgb3RoZXIgZGlzcGxheSBhcHBsaWNhdGlvbi4uLjwvZGl2 PjxkaXY+PGJyPjwvZGl2PjxkaXY+VGhhbmtzPC9kaXY+PGRpdj48YnI+PC9kaXY+PGRpdj5kPC9k aXY+PGRpdj4KPGRpdiBzdHlsZT0iZm9udC1zaXplOiAxMnB4OyAiPjxkaXYgc3R5bGU9Im1hcmdp bi10b3A6IDBweDsgbWFyZ2luLXJpZ2h0OiAwcHg7IG1hcmdpbi1ib3R0b206IDBweDsgbWFyZ2lu LWxlZnQ6IDBweDsgIj4vKjwvZGl2PjxkaXYgc3R5bGU9Im1hcmdpbi10b3A6IDBweDsgbWFyZ2lu LXJpZ2h0OiAwcHg7IG1hcmdpbi1ib3R0b206IDBweDsgbWFyZ2luLWxlZnQ6IDBweDsgIj5EYXZp ZGUgQ2l0dGFybzwvZGl2PjxkaXYgc3R5bGU9Im1hcmdpbi10b3A6IDBweDsgbWFyZ2luLXJpZ2h0 OiAwcHg7IG1hcmdpbi1ib3R0b206IDBweDsgbWFyZ2luLWxlZnQ6IDBweDsgIj48YnIgY2xhc3M9 IndlYmtpdC1ibG9jay1wbGFjZWhvbGRlciI+PC9kaXY+PGRpdiBzdHlsZT0ibWFyZ2luLXRvcDog MHB4OyBtYXJnaW4tcmlnaHQ6IDBweDsgbWFyZ2luLWJvdHRvbTogMHB4OyBtYXJnaW4tbGVmdDog MHB4OyAiPkNvZ2VudGVjaCAtIENvbnNvcnRpdW0gZm9yIEdlbm9taWMgVGVjaG5vbG9naWVzPC9k aXY+PGRpdiBzdHlsZT0ibWFyZ2luLXRvcDogMHB4OyBtYXJnaW4tcmlnaHQ6IDBweDsgbWFyZ2lu LWJvdHRvbTogMHB4OyBtYXJnaW4tbGVmdDogMHB4OyAiPnZpYSBhZGFtZWxsbywgMTY8L2Rpdj48 ZGl2IHN0eWxlPSJtYXJnaW4tdG9wOiAwcHg7IG1hcmdpbi1yaWdodDogMHB4OyBtYXJnaW4tYm90 dG9tOiAwcHg7IG1hcmdpbi1sZWZ0OiAwcHg7ICI+MjAxMzkgTWlsYW5vPC9kaXY+PGRpdiBzdHls ZT0ibWFyZ2luLXRvcDogMHB4OyBtYXJnaW4tcmlnaHQ6IDBweDsgbWFyZ2luLWJvdHRvbTogMHB4 OyBtYXJnaW4tbGVmdDogMHB4OyAiPkl0YWx5PC9kaXY+PGRpdiBzdHlsZT0ibWFyZ2luLXRvcDog MHB4OyBtYXJnaW4tcmlnaHQ6IDBweDsgbWFyZ2luLWJvdHRvbTogMHB4OyBtYXJnaW4tbGVmdDog MHB4OyBmb250OiBub3JtYWwgbm9ybWFsIG5vcm1hbCAxMnB4L25vcm1hbCBIZWx2ZXRpY2E7IG1p bi1oZWlnaHQ6IDE0cHg7ICI+PGJyPjwvZGl2PjxkaXYgc3R5bGU9Im1hcmdpbi10b3A6IDBweDsg bWFyZ2luLXJpZ2h0OiAwcHg7IG1hcmdpbi1ib3R0b206IDBweDsgbWFyZ2luLWxlZnQ6IDBweDsg Ij50ZWwuOiArMzkoMDIpNTc0MzAzMDA3PC9kaXY+PGRpdiBzdHlsZT0ibWFyZ2luLXRvcDogMHB4 OyBtYXJnaW4tcmlnaHQ6IDBweDsgbWFyZ2luLWJvdHRvbTogMHB4OyBtYXJnaW4tbGVmdDogMHB4 OyAiPmUtbWFpbDombmJzcDs8YSBocmVmPSJtYWlsdG86ZGF2aWRlLmNpdHRhcm9AaWZvbS1pZW8t Y2FtcHVzLml0Ij48Zm9udCBjbGFzcz0iQXBwbGUtc3R5bGUtc3BhbiIgY29sb3I9IiMwMDExRUQi PmRhdmlkZS5jaXR0YXJvQGlmb20taWVvLWNhbXB1cy5pdDwvZm9udD48L2E+PC9kaXY+PGRpdiBz dHlsZT0ibWFyZ2luLXRvcDogMHB4OyBtYXJnaW4tcmlnaHQ6IDBweDsgbWFyZ2luLWJvdHRvbTog MHB4OyBtYXJnaW4tbGVmdDogMHB4OyAiPiovPC9kaXY+PGRpdj48YnI+PC9kaXY+PC9kaXY+PGJy IGNsYXNzPSJBcHBsZS1pbnRlcmNoYW5nZS1uZXdsaW5lIj4KPC9kaXY+Cjxicj48L2Rpdj48L2Jv ZHk+PC9odG1sPg== --===============5841584516353148635==--