From ngsbioinformatics@gmail.com Fri May 27 12:42:26 2016 From: Ryan G To: galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] tabular file displayed without tabs Date: Fri, 27 May 2016 12:42:19 -0400 Message-ID: In-Reply-To: MIME-Version: 1.0 Content-Type: multipart/mixed; boundary="===============1785166936012943793==" --===============1785166936012943793== Content-Type: text/plain; charset="utf-8" Content-Transfer-Encoding: 8bit The format is listed as tabular when I view details. In fact, in the preview window in the History Pane, it recognizes there are columns and that the data is in fact tabular, but when displaying, this isn't the case. On Tue, May 24, 2016 at 4:20 PM, Carl Eberhard wrote: > Ok - if it's not zebra striped and it's word wrapping, then it's somehow > not displaying as tabular - you're correct. > > If you click on the 'View details' button of that dataset (the 'i' with > the circle around it shown when the dataset is expanded in the right hand > side of the 'Analyze Data' page), what does it list the 'Format' as? > 'tabular'? (This is also listed as 'Format' in the expanded view itself). > > On Mon, May 23, 2016 at 5:33 PM, Ryan G > wrote: > >> Odd because I have another tabular file that is displayed with every >> other line highlighted and there is not word-wrapping on the file. However >> the file that has the type tabular and displayed as text is word-wrapped >> with no lines highlighted. I suspect its not actually recognized as >> tabular or is being overridden where. >> >> >> On Thu, Nov 12, 2015 at 10:23 AM, Carl Eberhard >> wrote: >> >>> Hi, Ryan >>> >>> Galaxy displays tabular data in the browser using a tag. It >>> *sounds like* the behavior you see (columns losing space between one >>> another when narrowing the window and getting more space as you expand the >>> window) would reflect that. >>> >>> Carl >>> >>> On Wed, Oct 28, 2015 at 1:23 PM, Ryan G >>> wrote: >>> >>>> The file is an output from a tool and in the tool's xml, its format is >>>> tabular. >>>> >>>> >>>> >>>> On Tue, Oct 27, 2015 at 3:43 AM, Björn Grüning < >>>> bjoern.gruening(a)gmail.com> wrote: >>>> >>>>> Hi Ryan, >>>>> >>>>> is it recognised as 'tabular'? >>>>> >>>>> Ciao, >>>>> Bjoern >>>>> >>>>> Am 27.10.2015 um 04:42 schrieb Ryan G: >>>>> > Hi - I have a tools that generates a tab-delimited text file as >>>>> output. >>>>> > when I click the eye icon to view the data, all the fields are >>>>> compressed >>>>> > as if there were no tabs. If I expand the history view, the little >>>>> preview >>>>> > window shows the contents as tabbed. I've verified that the spaces >>>>> are >>>>> > indeed '\t' tab characters. Why would Galaxy not display this file >>>>> as a >>>>> > tab-delimited file? >>>>> > >>>>> > >>>>> > >>>>> > ___________________________________________________________ >>>>> > Please keep all replies on the list by using "reply all" >>>>> > in your mail client. To manage your subscriptions to this >>>>> > and other Galaxy lists, please use the interface at: >>>>> > https://lists.galaxyproject.org/ >>>>> > >>>>> > To search Galaxy mailing lists use the unified search at: >>>>> > http://galaxyproject.org/search/mailinglists/ >>>>> > >>>>> >>>> >>>> >>>> ___________________________________________________________ >>>> Please keep all replies on the list by using "reply all" >>>> in your mail client. To manage your subscriptions to this >>>> and other Galaxy lists, please use the interface at: >>>> https://lists.galaxyproject.org/ >>>> >>>> To search Galaxy mailing lists use the unified search at: >>>> http://galaxyproject.org/search/mailinglists/ >>>> >>> >>> >> > --===============1785166936012943793== Content-Type: text/html Content-Transfer-Encoding: base64 Content-Disposition: attachment; filename="attachment.htm" MIME-Version: 1.0 PGRpdiBkaXI9Imx0ciI+VGhlIGZvcm1hdCBpcyBsaXN0ZWQgYXMgdGFidWxhciB3aGVuIEkgdmll dyBkZXRhaWxzLjxkaXY+PGJyPjwvZGl2PjxkaXY+SW4gZmFjdCwgaW4gdGhlIHByZXZpZXcgd2lu ZG93IGluIHRoZSBIaXN0b3J5IFBhbmUsIGl0IHJlY29nbml6ZXMgdGhlcmUgYXJlIGNvbHVtbnMg YW5kIHRoYXQgdGhlIGRhdGEgaXMgaW4gZmFjdCB0YWJ1bGFyLCBidXQgd2hlbiBkaXNwbGF5aW5n LCB0aGlzIGlzbiYjMzk7dCB0aGUgY2FzZS4gwqDCoDwvZGl2PjxkaXY+PGJyPjwvZGl2PjxkaXY+ PGJyPjwvZGl2PjwvZGl2PjxkaXYgY2xhc3M9ImdtYWlsX2V4dHJhIj48YnI+PGRpdiBjbGFzcz0i Z21haWxfcXVvdGUiPk9uIFR1ZSwgTWF5IDI0LCAyMDE2IGF0IDQ6MjAgUE0sIENhcmwgRWJlcmhh 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