Hi Mohammed, that seems to be a old Tool Shed bug that is already fixed. Which Galaxy version are you running. Can you update to a more recent version? Thanks for using Galaxy and deepTools, Bjoern
Hello, I recently discovered the DeepTools program and have been looking forward to using it with Galaxy Cloudman. Today I attempted to load DeepTools from the Galaxy tool shed on my freshly started Galaxy Cloudman 2.0 instance and got the following error:
Internal Server Error Galaxy was unable to sucessfully complete your request URL: http://ec2-54-226-209-68.compute-1.amazonaws.com/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=8aa7aee9b90e1791&changeset_revisions=1ee0b1ecf500 Module galaxy.web.framework.middleware.error:149 in __call__
app_iter = self.application(environ, sr_checker) Module paste.recursive:84 in __call__ return self.application(environ, start_response) Module paste.httpexceptions:633 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.base:132 in __call__ return self.handle_request( environ, start_response ) Module galaxy.web.framework.base:190 in handle_request body = method( trans, **kwargs ) Module galaxy.web.framework:221 in decorator return func( self, trans, *args, **kwargs ) Module galaxy.webapps.galaxy.controllers.admin_toolshed:896 in prepare_for_install common_install_util.get_dependencies_for_repository( trans, tool_shed_url, repo_info_dict,includes_tool_dependencies ) Module tool_shed.util.common_install_util:84 in get_dependencies_for_repository installed_rd, missing_rd = get_installed_and_missing_repository_dependencies_for_new_install(trans, repo_info_tuple ) Module tool_shed.util.common_install_util:190 inget_installed_and_missing_repository_dependencies_for_new_install tool_shed, name, owner, changeset_revision, prior_installation_required =suc.parse_repository_dependency_tuple( rd_tup ) Module tool_shed.util.shed_util_common:1106 in parse_repository_dependency_tuple prior_installation_required = str( prior_installation_required ) UnboundLocalError: local variable 'prior_installation_required' referenced before assignment
I got this error when I tried to install either of the three revisions of the tool. Am I doing something wrong?
Any guidance is appreciated! Thanks in advance!
Cheers, Mo Heydarian
PhD candidate The Johns Hopkins School of Medicine Department of Biological Chemistry 725 Wolfe Street 402 Biophysics Baltimore, MD 21205