I only see HTTP messages. I haven't seen another error, I now just see the upload job not ever ending. (I'll be away next week so we might have to pick up on this when I'm back, if you don't hear from me) 10.101.10.34 - - [16/Nov/2012:14:36:46 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:36:50 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:36:54 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:36:55 -0400] "GET /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://galaxy/root/tool_menu" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:36:58 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:02 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:06 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:08 -0400] "POST /tool_runner/upload_async_create HTTP/1.1" 200 - "http://galaxy/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:08 -0400] "GET /tool_runner/upload_async_message HTTP/1.1" 200 - "http://galaxy/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:08 -0400] "GET /history HTTP/1.1" 200 - "http://galaxy/tool_runner/upload_async_message" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:08 -0400] "POST /root/user_get_usage HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:12 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:16 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:20 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:24 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:28 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:32 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:37 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:41 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:45 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:49 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:53 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:57 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:01 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:05 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:09 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:13 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:17 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:21 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:25 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:29 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:33 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:37 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:41 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:45 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:49 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:53 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" On Fri, Nov 16, 2012 at 2:27 PM, Nate Coraor <nate@bx.psu.edu> wrote:
On Nov 16, 2012, at 12:42 PM, greg wrote:
On Fri, Nov 16, 2012 at 12:28 PM, Nate Coraor <nate@bx.psu.edu> wrote:
If you follow the log, you should see messages from galaxy.jobs, and specifically, galaxy.jobs.runners.drmaa.
No, I don't see anything like that in the log after I started the upload. Any ideas on how to see what might be going wrong there?
Could you provide the contents of the log from the time you click the execute button on the tool form until it turns red in the UI?
I just noticed this thread was on the user list, so I've moved it over to the dev list.
--nate
-Greg