On Aug 5, 2013, at 6:23 PM, Rodolfo Aramayo wrote:
Hi,
I have a 80 core/1TB RAM Dell server. In order improve Galaxy performance I modified the universe_wsgi.ini file so as to improve the Scaling and Load Balancing as follows:
# Use a threadpool for the web server instead of creating a thread for each # request. use_threadpool = True
# Number of threads in the web server thread pool. threadpool_workers = 200
################################################################################ [server:web0] use = egg:Paste#http port = 8090 host = 127.0.0.1 use_threadpool = true threadpool_workers = 10
... snip ...
[server:handler18] use = egg:Paste#http port = 8318 host = 127.0.0.1 use_threadpool = true threadpool_workers = 5
# [server:handler19] # use = egg:Paste#http # port = 8319 # host = 127.0.0.1 # use_threadpool = true # threadpool_workers = 5
# [server:handler20] # use = egg:Paste#http # port = 8320 # host = 127.0.0.1 # use_threadpool = true # threadpool_workers = 5
################################################################################ job_manager = manager job_handlers = handler0,handler1,,handler2,handler3,handler4,handler5,handler6,handler7,handler8,handler9,handler10,handler11,handler12,handler13,handler14,handler15,handler16,handler17,handler18
Hi Rodolfo, The job_manager and job_handlers options go under the [server:main] section, it looks like they are probably underneath the last [server:...] section right now. Please note that all of these features should now be configured via the job configuration file (job_conf.xml), and I've just updated the documentation you referred to accordingly. --nate
################################################################################
Now the problem I have is that when I start galaxy I cannot get the last [server:handler18] to load correclt I get the following error:
galaxy.web.framework.base DEBUG 2013-08-05 17:08:24,236 Enabling 'library_contents' API controller, class: LibraryContentsController galaxy.web.framework.base DEBUG 2013-08-05 17:08:24,236 Enabling 'group_users' API controller, class: GroupUsersAPIController galaxy.web.framework.base DEBUG 2013-08-05 17:08:24,236 Enabling 'configuration' API controller, class: ConfigurationController galaxy.web.framework.base DEBUG 2013-08-05 17:08:24,237 Enabling 'requests' API controller, class: RequestsAPIController galaxy.web.framework.base DEBUG 2013-08-05 17:08:24,238 Enabling 'folders' API controller, class: FoldersController galaxy.web.framework.base DEBUG 2013-08-05 17:08:24,238 Enabling 'quotas' API controller, class: QuotaAPIController galaxy.web.framework.base DEBUG 2013-08-05 17:08:24,239 Enabling 'folder_contents' API controller, class: FolderContentsController galaxy.web.framework.base DEBUG 2013-08-05 17:08:24,239 Enabling 'roles' API controller, class: RoleAPIController galaxy.web.framework.base DEBUG 2013-08-05 17:08:24,240 Enabling 'request_types' API controller, class: RequestTypeAPIController galaxy.web.framework.base DEBUG 2013-08-05 17:08:24,240 Enabling 'users' API controller, class: UserAPIController galaxy.web.framework.base DEBUG 2013-08-05 17:08:24,241 Enabling 'samples' API controller, class: SamplesAPIController galaxy.web.framework.base DEBUG 2013-08-05 17:08:24,241 Enabling 'forms' API controller, class: FormDefinitionAPIController galaxy.web.framework.base DEBUG 2013-08-05 17:08:24,241 Enabling 'permissions' API controller, class: PermissionsController galaxy.web.framework.base DEBUG 2013-08-05 17:08:24,242 Enabling 'workflows' API controller, class: WorkflowsAPIController galaxy.webapps.galaxy.buildapp DEBUG 2013-08-05 17:08:24,242 app.config.api_folders: False galaxy.webapps.galaxy.buildapp DEBUG 2013-08-05 17:08:24,450 Enabling 'httpexceptions' middleware galaxy.webapps.galaxy.buildapp DEBUG 2013-08-05 17:08:24,450 Enabling 'recursive' middleware galaxy.webapps.galaxy.buildapp DEBUG 2013-08-05 17:08:24,700 Enabling 'error' middleware galaxy.webapps.galaxy.buildapp DEBUG 2013-08-05 17:08:24,701 Enabling 'trans logger' middleware galaxy.webapps.galaxy.buildapp DEBUG 2013-08-05 17:08:24,701 Enabling 'x-forwarded-host' middleware galaxy.webapps.galaxy.buildapp DEBUG 2013-08-05 17:08:24,701 Enabling 'Request ID' middleware Starting server in PID 3899. Traceback (most recent call last): File "./scripts/paster.py", line 33, in <module> serve.run() File "/usr/local/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 1049, in run invoke(command, command_name, options, args[1:]) File "/usr/local/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 1055, in invoke exit_code = runner.run(args) File "/usr/local/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 220, in run result = self.command() File "/usr/local/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 670, in command serve() File "/usr/local/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 654, in serve server(app) File "/usr/local/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line 292, in server_wrapper **context.local_conf) File "/usr/local/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line 100, in fix_call reraise(*exc_info) File "/usr/local/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line 37, in reraise exec('raise t, e, tb', dict(t=t, e=e, tb=tb)) File "/usr/local/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line 97, in fix_call val = callable(*args, **kw) File "/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py", line 1342, in server_runner serve(wsgi_app, **kwargs) TypeError: serve() got an unexpected keyword argument 'job_manager' Removing PID file handler18.pid
If I use activate [server:handler20] for example, this one would act up as well. It is always the last one and in all cases the port used is totally incorrect and was never assigned
Am I doing something terribly wrong?
I tried to use ports not 'assigned' and tried to add web servers and handlers according to my best understanding of the instructions (http://wiki.galaxyproject.org/Admin/Config/Performance/Web%20Application%20S...)
Please any suggestions would be most welcome
Thanks
--Rodolfo ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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