Hi Dave,

You are right that on closer inspection I've mixed tool_dependencies.xml
and repository_dependencies.xml *again*. Evidentially my mental model
does not match Greg's here:

(*) I need to define a tool installation recipe for something not in the
Tool Shed --> write an install script called tool_dependencies.xml

(*) I need to depend on a Python package by pointing at another repository
in the Tool Shed --> repository_dependencies.xml

(*) I need to depend on a datatype package by pointing at another repository
in the Tool Shed --> repository_dependencies.xml

(*) I need to depend on a binary package by pointing at another repository
in the Tool Shed --> repository_dependencies.xml ? No. You need
tool_dependencies.xml for this too

But that aside, the test framework error here is completely unhelpful.

Why is there no error message about missing a dependency?
Was there an error from running my tool which was not shown?

Thanks,

Peter

On Wed, Jul 30, 2014 at 6:07 PM, Dave Bouvier <dave@bx.psu.edu> wrote:
> Peter,
>
> I believe part of the problem is that the install and test framework is
> unable to resolve the dependency on blast+ 2.2.29 because it is defined as a
> repository dependency, not a tool dependency. I would recommend replacing
> the repository dependency in the blast_rbh repository with a tool dependency
> definition that references package_blast_plus_2_2_29.
>
> --Dave B.
>
> On 07/30/2014 05:27 AM, Peter Cock wrote:
>>
>> Hi all,
>>
>> I'm not sure when this started (having hardly looked at my Tool Shed
>> test results since GCC2014), but I think this is a fairly recent problem
>> with my BLAST RBH tests failing (which has held me back from posting
>> this to the main Tool Shed).
>>
>> This could be some silly mistake in my tar-ball, but usually missing
>> test files and the like get an explicit error. The tests are passing
>> on my GitHub/TravisCI setup (using Twill and the API backend):
>> e.g. https://travis-ci.org/peterjc/galaxy_blast/builds/30592097
>>
>> Here is the current error (the same for the last few Test Tool Shed
>> runs), https://testtoolshed.g2.bx.psu.edu/view/peterjc/blast_rbh
>>
>> Traceback (most recent call last):
>>    File
>> "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/functional/test_toolbox.py",
>> line 108, in test_tool
>>      self.do_it( td )
>>    File
>> "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/functional/test_toolbox.py",
>> line 35, in do_it
>>      self._verify_outputs( testdef, test_history, shed_tool_id,
>> data_list, galaxy_interactor )
>>    File
>> "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/functional/test_toolbox.py",
>> line 69, in _verify_outputs
>>      galaxy_interactor.verify_output( history, output_data,
>> output_testdef=output_testdef, shed_tool_id=shed_tool_id,
>> maxseconds=maxseconds )
>>    File
>> "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/base/interactor.py",
>> line 53, in verify_output
>>      self.wait_for_history( history_id, maxseconds )
>>    File
>> "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/base/interactor.py",
>> line 107, in wait_for_history
>>      self.twill_test_case.wait_for( lambda: not self.__history_ready(
>> history_id ), maxseconds=maxseconds)
>>    File
>> "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/base/twilltestcase.py",
>> line 2453, in wait_for
>>      result = func()
>>    File
>> "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/base/interactor.py",
>> line 107, in <lambda>
>>      self.twill_test_case.wait_for( lambda: not self.__history_ready(
>> history_id ), maxseconds=maxseconds)
>>    File
>> "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/base/interactor.py",
>> line 257, in __history_ready
>>      return self._state_ready( state, error_msg="History in error state."
>> )
>>    File
>> "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/base/interactor.py",
>> line 316, in _state_ready
>>      raise Exception( error_msg )
>> Exception: History in error state.
>>
>> Is a more detailed log available which might help debug this?
>>
>> Thanks,
>>
>> Peter
>>
>> As an aside, this looks like the Test Tool Shed is still using the
>> Twill backend for the functional tests?
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