I've started up an instance using cloudman, and it seemed to be running fine.  When I tried to install a tool from the toolshed I got an error, and in trying to resolve the error I used the admin console to update galaxy.

Now when Galaxy tries to start I get the following error:

galaxy.datatypes.registry DEBUG 2013-06-26 22:20:49,969 Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm'
galaxy.datatypes.registry DEBUG 2013-06-26 22:20:49,969 Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm'
galaxy.datatypes.registry DEBUG 2013-06-26 22:20:49,969 Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm'
galaxy.datatypes.registry DEBUG 2013-06-26 22:20:49,970 Loaded sniffer for datatype 'galaxy.datatypes.images:Eps'
galaxy.datatypes.registry DEBUG 2013-06-26 22:20:49,970 Loaded sniffer for datatype 'galaxy.datatypes.images:Rast'
galaxy.tools.data DEBUG 2013-06-26 22:20:49,988 Loaded tool data table 'all_fasta'
galaxy.tools.data DEBUG 2013-06-26 22:20:49,988 Loaded tool data table 'blastdb'
galaxy.tools.data DEBUG 2013-06-26 22:20:49,989 Loaded tool data table 'bowtie_indexes'
galaxy.tools.data DEBUG 2013-06-26 22:20:49,989 Loaded tool data table 'bowtie_indexes_color'
galaxy.tools.data DEBUG 2013-06-26 22:20:49,990 Loaded tool data table 'bwa_indexes'
galaxy.tools.data DEBUG 2013-06-26 22:20:49,990 Loaded tool data table 'lastz_seqs'
galaxy.tools.data DEBUG 2013-06-26 22:20:49,990 Loaded tool data table 'perm_base_indexes'
galaxy.tools.data DEBUG 2013-06-26 22:20:49,996 Loaded tool data table 'perm_color_indexes'
galaxy.tools.data DEBUG 2013-06-26 22:20:49,996 Loaded tool data table 'sam_fa_indexes'
galaxy.tools.data DEBUG 2013-06-26 22:20:49,997 Loaded tool data table 'picard_indexes'
galaxy.tools.data DEBUG 2013-06-26 22:20:49,997 Loaded tool data table 'srma_indexes'
galaxy.tools.data DEBUG 2013-06-26 22:20:49,997 Loaded tool data table 'tophat_indexes'
galaxy.tools.data DEBUG 2013-06-26 22:20:49,998 Loaded tool data table 'mosaik_indexes'
galaxy.tools.data DEBUG 2013-06-26 22:20:49,998 Loaded tool data table 'sam_indexes'
galaxy.tools.data DEBUG 2013-06-26 22:20:49,998 Loaded tool data table 'twobit'
galaxy.tools.data DEBUG 2013-06-26 22:20:49,999 Loaded tool data table 'lift_over'
Traceback (most recent call last):
  File "/mnt/galaxyTools/galaxy-central/lib/galaxy/webapps/galaxy/buildapp.py", line 35, in app_factory
    app = UniverseApplication( global_conf = global_conf, **kwargs )
  File "/mnt/galaxyTools/galaxy-central/lib/galaxy/app.py", line 95, in __init__
    from_shed_config=False )
  File "/mnt/galaxyTools/galaxy-central/lib/galaxy/tools/data/__init__.py", line 56, in load_from_config_file
    tree = util.parse_xml( config_filename )
  File "/mnt/galaxyTools/galaxy-central/lib/galaxy/util/__init__.py", line 132, in parse_xml
    tree = ElementTree.parse(fname)
  File "/mnt/galaxyTools/galaxy-central/eggs/elementtree-1.2.6_20050316-py2.6.egg/elementtree/ElementTree.py", line 859, in parse
    tree.parse(source, parser)
  File "/mnt/galaxyTools/galaxy-central/eggs/elementtree-1.2.6_20050316-py2.6.egg/elementtree/ElementTree.py", line 576, in parse
    source = open(source, "rb")
IOError: [Errno 2] No such file or directory: './shed_tool_data_table_conf.xml'
Removing PID file paster.pid

How do I resolve the no such file or directory error?

I found an email conversation on this that said to restart galaxy, and I've done this multiple times but the problem is persisting.

Thanks,

-Brad

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