Thank you Greg,

That what I tried to do initially but I could not find this tool the tool shed repository.  Here is what I did, as an admin I went to Search and browse shed tool->Galaxy main tool shed

Then I searched for “ngsrich” I could not find it.  Then I looked under static category I still could not find it.  I even went to the search page I looked for the software and still will not show up.  I finally downloaded it manually but had not gone that far.

I am not sure if what I did make sense or not or the right way to do.  Can you please tell me how to find that tool other than what I did above?  Or if what I did is missing something?

I appreciate your help…

From: Greg Von Kuster [mailto:greg@bx.psu.edu]
Sent: Thursday, February 14, 2013 5:29 PM
To: Hakeem Almabrazi
Cc: Galaxy Dev
Subject: Re: [galaxy-dev] Install NGSRich in local galaxy

Hello Hakeem,

Here is a link to the tool shed wiki sections that provide all of the details for installing repositories from the tool shed into your local Galaxy instance.

http://wiki.galaxyproject.org/Tool%20Shed#Installing.2C_maintaining_and_uninstalling_tool_shed_repositories_within_a_Galaxy_instance

We advise that you use the automatic installation process when installing into your Galaxy instance and not the manual installation process.  

Greg Von Kuster

On Feb 14, 2013, at 5:48 PM, Hakeem Almabrazi wrote:

HI,

Does anyone know who to install NGSRich software on a local instance of Galaxy? 

I tried to install it from the shed_tool but it does not show up in the repository, so I manually downloaded it from  

http://toolshed.g2.bx.psu.edu/repository/view_repository?sort=name&operation=view_or_manage_repository&page=1&async=false&show_item_checkboxes=false&f-free-text-search=ngs&id=feaea37bb0f3bdca

But now, I am not sure how to add it into my galaxy env.

Any help will be highly appreciated …

Regards,

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